Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17880 and HMPREF1058_RS17875 are separated by 93 nucleotides HMPREF1058_RS17875 and HMPREF1058_RS17870 are separated by 208 nucleotides HMPREF1058_RS17870 and HMPREF1058_RS17865 overlap by 35 nucleotides HMPREF1058_RS17865 and HMPREF1058_RS17860 are separated by 85 nucleotides
HMPREF1058_RS17880: HMPREF1058_RS17880 - diacylglycerol kinase family protein, at 310,293 to 310,646
_RS17880
HMPREF1058_RS17875: HMPREF1058_RS17875 - DUF1573 domain-containing protein, at 310,740 to 311,153
_RS17875
HMPREF1058_RS17870: HMPREF1058_RS17870 - metallophosphoesterase, at 311,362 to 312,168
_RS17870
HMPREF1058_RS17865: HMPREF1058_RS17865 - hypothetical protein, at 312,134 to 312,895
_RS17865
HMPREF1058_RS17860: HMPREF1058_RS17860 - oligopeptide transporter, OPT family, at 312,981 to 314,972
_RS17860
Position (kb) 311
312
313 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 310.432 kb on + strand, within HMPREF1058_RS17880 at 310.478 kb on - strand, within HMPREF1058_RS17880 at 310.547 kb on + strand, within HMPREF1058_RS17880 at 310.709 kb on + strand at 310.738 kb on + strand at 310.738 kb on + strand at 310.738 kb on + strand at 310.765 kb on + strand at 310.766 kb on - strand at 310.777 kb on + strand at 310.851 kb on - strand, within HMPREF1058_RS17875 at 310.851 kb on - strand, within HMPREF1058_RS17875 at 311.026 kb on - strand, within HMPREF1058_RS17875 at 311.026 kb on - strand, within HMPREF1058_RS17875 at 311.028 kb on - strand, within HMPREF1058_RS17875 at 311.114 kb on - strand at 311.167 kb on + strand at 311.167 kb on + strand at 311.181 kb on + strand at 311.211 kb on - strand at 311.211 kb on - strand at 311.224 kb on - strand at 311.262 kb on + strand at 311.448 kb on + strand, within HMPREF1058_RS17870 at 311.448 kb on + strand, within HMPREF1058_RS17870 at 311.449 kb on - strand, within HMPREF1058_RS17870 at 311.449 kb on - strand, within HMPREF1058_RS17870 at 311.449 kb on - strand, within HMPREF1058_RS17870 at 311.449 kb on - strand, within HMPREF1058_RS17870 at 311.449 kb on - strand, within HMPREF1058_RS17870 at 311.558 kb on - strand, within HMPREF1058_RS17870 at 311.579 kb on + strand, within HMPREF1058_RS17870 at 311.679 kb on - strand, within HMPREF1058_RS17870 at 311.679 kb on - strand, within HMPREF1058_RS17870 at 311.701 kb on + strand, within HMPREF1058_RS17870 at 311.705 kb on + strand at 311.705 kb on + strand, within HMPREF1058_RS17870 at 311.706 kb on - strand, within HMPREF1058_RS17870 at 311.706 kb on - strand, within HMPREF1058_RS17870 at 311.836 kb on + strand, within HMPREF1058_RS17870 at 312.023 kb on - strand, within HMPREF1058_RS17870 at 312.057 kb on - strand, within HMPREF1058_RS17870 at 312.096 kb on - strand at 312.109 kb on + strand at 312.113 kb on + strand at 312.113 kb on + strand at 312.114 kb on - strand at 312.114 kb on - strand at 312.186 kb on + strand at 312.187 kb on - strand at 312.208 kb on + strand at 312.264 kb on + strand, within HMPREF1058_RS17865 at 312.264 kb on + strand, within HMPREF1058_RS17865 at 312.264 kb on + strand, within HMPREF1058_RS17865 at 312.264 kb on + strand, within HMPREF1058_RS17865 at 312.265 kb on - strand, within HMPREF1058_RS17865 at 312.304 kb on + strand, within HMPREF1058_RS17865 at 312.335 kb on - strand, within HMPREF1058_RS17865 at 312.339 kb on - strand, within HMPREF1058_RS17865 at 312.339 kb on - strand, within HMPREF1058_RS17865 at 312.402 kb on + strand, within HMPREF1058_RS17865 at 312.407 kb on + strand, within HMPREF1058_RS17865 at 312.551 kb on + strand at 312.554 kb on - strand, within HMPREF1058_RS17865 at 312.565 kb on + strand, within HMPREF1058_RS17865 at 312.565 kb on + strand, within HMPREF1058_RS17865 at 312.709 kb on + strand, within HMPREF1058_RS17865 at 312.836 kb on + strand at 312.836 kb on + strand at 312.865 kb on - strand at 312.889 kb on - strand at 312.943 kb on + strand at 312.944 kb on - strand at 313.093 kb on + strand at 313.099 kb on + strand at 313.100 kb on - strand at 313.155 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3 remove 310,432 + HMPREF1058_RS17880 0.39 +0.3 310,478 - HMPREF1058_RS17880 0.52 -0.1 310,547 + HMPREF1058_RS17880 0.72 +0.2 310,709 + -0.1 310,738 + +1.7 310,738 + +0.9 310,738 + -0.6 310,765 + -0.9 310,766 - -1.5 310,777 + -0.3 310,851 - HMPREF1058_RS17875 0.27 -0.1 310,851 - HMPREF1058_RS17875 0.27 -1.5 311,026 - HMPREF1058_RS17875 0.69 +0.1 311,026 - HMPREF1058_RS17875 0.69 -0.5 311,028 - HMPREF1058_RS17875 0.70 -0.4 311,114 - +1.9 311,167 + +0.0 311,167 + -0.4 311,181 + -0.7 311,211 - +0.2 311,211 - +0.4 311,224 - +0.3 311,262 + -1.1 311,448 + HMPREF1058_RS17870 0.11 +0.6 311,448 + HMPREF1058_RS17870 0.11 -0.7 311,449 - HMPREF1058_RS17870 0.11 -0.1 311,449 - HMPREF1058_RS17870 0.11 +0.8 311,449 - HMPREF1058_RS17870 0.11 -1.7 311,449 - HMPREF1058_RS17870 0.11 +1.0 311,449 - HMPREF1058_RS17870 0.11 +0.4 311,558 - HMPREF1058_RS17870 0.24 +1.1 311,579 + HMPREF1058_RS17870 0.27 +0.4 311,679 - HMPREF1058_RS17870 0.39 +0.6 311,679 - HMPREF1058_RS17870 0.39 +0.3 311,701 + HMPREF1058_RS17870 0.42 -0.3 311,705 + +1.5 311,705 + HMPREF1058_RS17870 0.43 +0.3 311,706 - HMPREF1058_RS17870 0.43 +0.0 311,706 - HMPREF1058_RS17870 0.43 +0.7 311,836 + HMPREF1058_RS17870 0.59 +0.6 312,023 - HMPREF1058_RS17870 0.82 +0.7 312,057 - HMPREF1058_RS17870 0.86 +1.0 312,096 - -1.3 312,109 + +0.7 312,113 + +1.0 312,113 + -0.8 312,114 - +0.0 312,114 - +0.9 312,186 + +0.8 312,187 - -0.1 312,208 + -0.7 312,264 + HMPREF1058_RS17865 0.17 -0.3 312,264 + HMPREF1058_RS17865 0.17 -1.7 312,264 + HMPREF1058_RS17865 0.17 +0.7 312,264 + HMPREF1058_RS17865 0.17 +0.1 312,265 - HMPREF1058_RS17865 0.17 -0.6 312,304 + HMPREF1058_RS17865 0.22 -0.0 312,335 - HMPREF1058_RS17865 0.26 -3.9 312,339 - HMPREF1058_RS17865 0.27 -0.5 312,339 - HMPREF1058_RS17865 0.27 +1.7 312,402 + HMPREF1058_RS17865 0.35 +0.0 312,407 + HMPREF1058_RS17865 0.36 -1.1 312,551 + +0.9 312,554 - HMPREF1058_RS17865 0.55 +0.7 312,565 + HMPREF1058_RS17865 0.57 +0.0 312,565 + HMPREF1058_RS17865 0.57 +0.1 312,709 + HMPREF1058_RS17865 0.75 +0.8 312,836 + +0.1 312,836 + +1.6 312,865 - -0.1 312,889 - -0.5 312,943 + +0.1 312,944 - +1.7 313,093 + +0.7 313,099 + -1.1 313,100 - -1.5 313,155 + +0.4
Or see this region's nucleotide sequence