Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17655 and HMPREF1058_RS17650 overlap by 11 nucleotides HMPREF1058_RS17650 and HMPREF1058_RS17645 are separated by 29 nucleotides HMPREF1058_RS17645 and HMPREF1058_RS0119330 are separated by 148 nucleotides HMPREF1058_RS0119330 and HMPREF1058_RS17640 are separated by 169 nucleotides
HMPREF1058_RS17655: HMPREF1058_RS17655 - AbgT family transporter, at 374,355 to 375,071
_RS17655
HMPREF1058_RS17650: HMPREF1058_RS17650 - response regulator transcription factor, at 375,061 to 375,789
_RS17650
HMPREF1058_RS17645: HMPREF1058_RS17645 - DUF5113 domain-containing protein, at 375,819 to 380,216
_RS17645
HMPREF1058_RS0119330: HMPREF1058_RS0119330 - histone H1, at 380,365 to 380,538
_RS0119330
HMPREF1058_RS17640: HMPREF1058_RS17640 - L-lactate permease, at 380,708 to 382,207
_RS17640
Position (kb) 375
376
377
378
379
380
381 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 374.984 kb on + strand, within HMPREF1058_RS17655 at 375.055 kb on + strand at 375.084 kb on + strand at 375.290 kb on + strand, within HMPREF1058_RS17650 at 375.291 kb on - strand, within HMPREF1058_RS17650 at 375.300 kb on + strand, within HMPREF1058_RS17650 at 375.425 kb on - strand, within HMPREF1058_RS17650 at 375.466 kb on - strand, within HMPREF1058_RS17650 at 375.466 kb on - strand, within HMPREF1058_RS17650 at 375.514 kb on + strand, within HMPREF1058_RS17650 at 375.736 kb on + strand at 375.757 kb on + strand at 375.792 kb on + strand at 376.149 kb on - strand at 376.242 kb on + strand at 376.302 kb on - strand, within HMPREF1058_RS17645 at 376.348 kb on - strand, within HMPREF1058_RS17645 at 376.355 kb on + strand, within HMPREF1058_RS17645 at 376.361 kb on - strand, within HMPREF1058_RS17645 at 376.573 kb on - strand, within HMPREF1058_RS17645 at 376.612 kb on + strand, within HMPREF1058_RS17645 at 376.612 kb on + strand, within HMPREF1058_RS17645 at 376.612 kb on + strand, within HMPREF1058_RS17645 at 376.615 kb on - strand, within HMPREF1058_RS17645 at 376.937 kb on + strand, within HMPREF1058_RS17645 at 376.938 kb on - strand, within HMPREF1058_RS17645 at 377.074 kb on + strand, within HMPREF1058_RS17645 at 377.132 kb on + strand, within HMPREF1058_RS17645 at 377.164 kb on + strand, within HMPREF1058_RS17645 at 377.200 kb on + strand, within HMPREF1058_RS17645 at 377.334 kb on + strand, within HMPREF1058_RS17645 at 377.334 kb on + strand, within HMPREF1058_RS17645 at 377.392 kb on + strand, within HMPREF1058_RS17645 at 377.401 kb on + strand, within HMPREF1058_RS17645 at 377.402 kb on - strand, within HMPREF1058_RS17645 at 377.419 kb on + strand, within HMPREF1058_RS17645 at 377.455 kb on + strand at 377.472 kb on - strand, within HMPREF1058_RS17645 at 377.489 kb on - strand, within HMPREF1058_RS17645 at 377.489 kb on - strand, within HMPREF1058_RS17645 at 377.489 kb on - strand, within HMPREF1058_RS17645 at 377.494 kb on + strand, within HMPREF1058_RS17645 at 377.495 kb on - strand, within HMPREF1058_RS17645 at 377.739 kb on - strand, within HMPREF1058_RS17645 at 377.739 kb on - strand, within HMPREF1058_RS17645 at 377.739 kb on - strand, within HMPREF1058_RS17645 at 377.741 kb on - strand, within HMPREF1058_RS17645 at 377.976 kb on - strand, within HMPREF1058_RS17645 at 378.003 kb on - strand, within HMPREF1058_RS17645 at 378.144 kb on + strand, within HMPREF1058_RS17645 at 378.145 kb on - strand, within HMPREF1058_RS17645 at 378.200 kb on + strand, within HMPREF1058_RS17645 at 378.201 kb on - strand, within HMPREF1058_RS17645 at 378.202 kb on + strand, within HMPREF1058_RS17645 at 378.202 kb on + strand, within HMPREF1058_RS17645 at 378.203 kb on - strand, within HMPREF1058_RS17645 at 378.233 kb on + strand, within HMPREF1058_RS17645 at 378.242 kb on - strand, within HMPREF1058_RS17645 at 378.274 kb on + strand, within HMPREF1058_RS17645 at 378.321 kb on - strand, within HMPREF1058_RS17645 at 378.409 kb on + strand, within HMPREF1058_RS17645 at 378.410 kb on - strand, within HMPREF1058_RS17645 at 378.410 kb on - strand, within HMPREF1058_RS17645 at 378.494 kb on + strand, within HMPREF1058_RS17645 at 378.774 kb on + strand, within HMPREF1058_RS17645 at 378.774 kb on + strand, within HMPREF1058_RS17645 at 378.806 kb on - strand, within HMPREF1058_RS17645 at 378.834 kb on - strand, within HMPREF1058_RS17645 at 378.849 kb on + strand, within HMPREF1058_RS17645 at 378.930 kb on - strand, within HMPREF1058_RS17645 at 378.932 kb on - strand, within HMPREF1058_RS17645 at 379.031 kb on - strand, within HMPREF1058_RS17645 at 379.036 kb on - strand, within HMPREF1058_RS17645 at 379.084 kb on - strand, within HMPREF1058_RS17645 at 379.167 kb on - strand, within HMPREF1058_RS17645 at 379.167 kb on - strand, within HMPREF1058_RS17645 at 379.222 kb on + strand, within HMPREF1058_RS17645 at 379.222 kb on + strand, within HMPREF1058_RS17645 at 379.222 kb on + strand, within HMPREF1058_RS17645 at 379.280 kb on - strand, within HMPREF1058_RS17645 at 379.573 kb on + strand, within HMPREF1058_RS17645 at 379.573 kb on + strand, within HMPREF1058_RS17645 at 379.596 kb on - strand, within HMPREF1058_RS17645 at 379.596 kb on - strand, within HMPREF1058_RS17645 at 379.597 kb on + strand, within HMPREF1058_RS17645 at 379.603 kb on + strand, within HMPREF1058_RS17645 at 379.607 kb on - strand, within HMPREF1058_RS17645 at 379.696 kb on + strand, within HMPREF1058_RS17645 at 379.699 kb on + strand, within HMPREF1058_RS17645 at 379.702 kb on + strand, within HMPREF1058_RS17645 at 379.703 kb on - strand, within HMPREF1058_RS17645 at 379.738 kb on + strand, within HMPREF1058_RS17645 at 379.742 kb on + strand, within HMPREF1058_RS17645 at 379.743 kb on - strand, within HMPREF1058_RS17645 at 379.772 kb on + strand, within HMPREF1058_RS17645 at 379.821 kb on - strand at 379.831 kb on + strand at 379.832 kb on - strand at 379.874 kb on + strand at 379.921 kb on + strand at 379.924 kb on - strand at 379.924 kb on - strand at 380.054 kb on + strand at 380.123 kb on - strand at 380.123 kb on - strand at 380.123 kb on - strand at 380.125 kb on - strand at 380.125 kb on - strand at 380.126 kb on + strand at 380.126 kb on + strand at 380.126 kb on + strand at 380.127 kb on - strand at 380.169 kb on + strand at 380.170 kb on - strand at 380.170 kb on - strand at 380.171 kb on + strand at 380.171 kb on + strand at 380.179 kb on - strand at 380.191 kb on - strand at 380.207 kb on + strand at 380.217 kb on - strand at 380.217 kb on - strand at 380.253 kb on + strand at 380.268 kb on - strand at 380.309 kb on + strand at 380.371 kb on - strand at 380.527 kb on + strand at 380.592 kb on + strand at 380.593 kb on - strand at 380.602 kb on - strand at 380.675 kb on - strand at 380.706 kb on + strand at 380.748 kb on + strand at 380.748 kb on + strand at 380.749 kb on - strand at 380.831 kb on - strand at 380.873 kb on - strand, within HMPREF1058_RS17640 at 380.924 kb on - strand, within HMPREF1058_RS17640 at 380.930 kb on + strand, within HMPREF1058_RS17640 at 380.975 kb on - strand, within HMPREF1058_RS17640 at 380.993 kb on + strand, within HMPREF1058_RS17640 at 381.052 kb on + strand, within HMPREF1058_RS17640 at 381.152 kb on + strand, within HMPREF1058_RS17640 at 381.153 kb on - strand, within HMPREF1058_RS17640
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3 remove 374,984 + HMPREF1058_RS17655 0.88 -1.7 375,055 + +1.1 375,084 + +0.9 375,290 + HMPREF1058_RS17650 0.31 +0.7 375,291 - HMPREF1058_RS17650 0.32 +0.4 375,300 + HMPREF1058_RS17650 0.33 +0.6 375,425 - HMPREF1058_RS17650 0.50 +1.0 375,466 - HMPREF1058_RS17650 0.56 +0.4 375,466 - HMPREF1058_RS17650 0.56 -1.2 375,514 + HMPREF1058_RS17650 0.62 -0.4 375,736 + +0.3 375,757 + +0.6 375,792 + +0.4 376,149 - -0.4 376,242 + +2.1 376,302 - HMPREF1058_RS17645 0.11 -1.0 376,348 - HMPREF1058_RS17645 0.12 +1.1 376,355 + HMPREF1058_RS17645 0.12 +1.6 376,361 - HMPREF1058_RS17645 0.12 -0.5 376,573 - HMPREF1058_RS17645 0.17 +0.2 376,612 + HMPREF1058_RS17645 0.18 +1.3 376,612 + HMPREF1058_RS17645 0.18 +0.6 376,612 + HMPREF1058_RS17645 0.18 +0.7 376,615 - HMPREF1058_RS17645 0.18 -0.7 376,937 + HMPREF1058_RS17645 0.25 +1.3 376,938 - HMPREF1058_RS17645 0.25 +0.6 377,074 + HMPREF1058_RS17645 0.29 +1.5 377,132 + HMPREF1058_RS17645 0.30 +1.0 377,164 + HMPREF1058_RS17645 0.31 -0.6 377,200 + HMPREF1058_RS17645 0.31 +0.9 377,334 + HMPREF1058_RS17645 0.34 -0.2 377,334 + HMPREF1058_RS17645 0.34 +1.4 377,392 + HMPREF1058_RS17645 0.36 +1.4 377,401 + HMPREF1058_RS17645 0.36 +1.3 377,402 - HMPREF1058_RS17645 0.36 +2.3 377,419 + HMPREF1058_RS17645 0.36 +1.7 377,455 + +1.5 377,472 - HMPREF1058_RS17645 0.38 +0.2 377,489 - HMPREF1058_RS17645 0.38 +0.3 377,489 - HMPREF1058_RS17645 0.38 +0.2 377,489 - HMPREF1058_RS17645 0.38 -0.9 377,494 + HMPREF1058_RS17645 0.38 -0.7 377,495 - HMPREF1058_RS17645 0.38 +1.1 377,739 - HMPREF1058_RS17645 0.44 +0.4 377,739 - HMPREF1058_RS17645 0.44 +0.1 377,739 - HMPREF1058_RS17645 0.44 +0.4 377,741 - HMPREF1058_RS17645 0.44 -3.6 377,976 - HMPREF1058_RS17645 0.49 +0.1 378,003 - HMPREF1058_RS17645 0.50 +0.4 378,144 + HMPREF1058_RS17645 0.53 +1.2 378,145 - HMPREF1058_RS17645 0.53 -0.9 378,200 + HMPREF1058_RS17645 0.54 -1.4 378,201 - HMPREF1058_RS17645 0.54 +0.2 378,202 + HMPREF1058_RS17645 0.54 -0.6 378,202 + HMPREF1058_RS17645 0.54 +0.9 378,203 - HMPREF1058_RS17645 0.54 +0.7 378,233 + HMPREF1058_RS17645 0.55 -0.0 378,242 - HMPREF1058_RS17645 0.55 +0.0 378,274 + HMPREF1058_RS17645 0.56 +0.9 378,321 - HMPREF1058_RS17645 0.57 -0.5 378,409 + HMPREF1058_RS17645 0.59 +0.4 378,410 - HMPREF1058_RS17645 0.59 +0.4 378,410 - HMPREF1058_RS17645 0.59 +0.6 378,494 + HMPREF1058_RS17645 0.61 -1.0 378,774 + HMPREF1058_RS17645 0.67 +1.7 378,774 + HMPREF1058_RS17645 0.67 -0.5 378,806 - HMPREF1058_RS17645 0.68 +0.4 378,834 - HMPREF1058_RS17645 0.69 -1.2 378,849 + HMPREF1058_RS17645 0.69 +0.7 378,930 - HMPREF1058_RS17645 0.71 +0.3 378,932 - HMPREF1058_RS17645 0.71 +0.4 379,031 - HMPREF1058_RS17645 0.73 -0.0 379,036 - HMPREF1058_RS17645 0.73 +0.7 379,084 - HMPREF1058_RS17645 0.74 +1.1 379,167 - HMPREF1058_RS17645 0.76 -0.3 379,167 - HMPREF1058_RS17645 0.76 +0.7 379,222 + HMPREF1058_RS17645 0.77 +0.5 379,222 + HMPREF1058_RS17645 0.77 +1.0 379,222 + HMPREF1058_RS17645 0.77 -0.3 379,280 - HMPREF1058_RS17645 0.79 +0.9 379,573 + HMPREF1058_RS17645 0.85 +0.9 379,573 + HMPREF1058_RS17645 0.85 -0.2 379,596 - HMPREF1058_RS17645 0.86 +0.9 379,596 - HMPREF1058_RS17645 0.86 -2.2 379,597 + HMPREF1058_RS17645 0.86 +0.4 379,603 + HMPREF1058_RS17645 0.86 +0.6 379,607 - HMPREF1058_RS17645 0.86 +0.0 379,696 + HMPREF1058_RS17645 0.88 +0.7 379,699 + HMPREF1058_RS17645 0.88 +0.7 379,702 + HMPREF1058_RS17645 0.88 +1.3 379,703 - HMPREF1058_RS17645 0.88 +0.1 379,738 + HMPREF1058_RS17645 0.89 +1.0 379,742 + HMPREF1058_RS17645 0.89 +1.0 379,743 - HMPREF1058_RS17645 0.89 +0.2 379,772 + HMPREF1058_RS17645 0.90 +0.3 379,821 - +0.7 379,831 + +1.3 379,832 - +1.1 379,874 + +0.8 379,921 + +1.1 379,924 - +0.1 379,924 - -0.6 380,054 + +0.6 380,123 - +0.9 380,123 - +0.9 380,123 - +1.0 380,125 - -2.1 380,125 - +1.4 380,126 + +0.6 380,126 + +1.0 380,126 + +0.7 380,127 - +0.8 380,169 + +0.8 380,170 - +1.1 380,170 - +0.3 380,171 + +0.7 380,171 + +0.7 380,179 - +0.5 380,191 - -0.7 380,207 + +0.1 380,217 - +0.3 380,217 - -0.3 380,253 + +0.9 380,268 - -1.1 380,309 + +0.1 380,371 - +0.2 380,527 + -2.6 380,592 + -0.2 380,593 - +0.4 380,602 - -0.1 380,675 - +0.8 380,706 + +0.1 380,748 + +0.4 380,748 + -0.9 380,749 - -0.3 380,831 - -0.2 380,873 - HMPREF1058_RS17640 0.11 +1.0 380,924 - HMPREF1058_RS17640 0.14 +0.3 380,930 + HMPREF1058_RS17640 0.15 -0.0 380,975 - HMPREF1058_RS17640 0.18 +0.4 380,993 + HMPREF1058_RS17640 0.19 +0.0 381,052 + HMPREF1058_RS17640 0.23 -1.6 381,152 + HMPREF1058_RS17640 0.30 -0.4 381,153 - HMPREF1058_RS17640 0.30 -0.2
Or see this region's nucleotide sequence