Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17380 and HMPREF1058_RS17375 are separated by 198 nucleotides HMPREF1058_RS17375 and HMPREF1058_RS17370 are separated by 277 nucleotides HMPREF1058_RS17370 and HMPREF1058_RS17365 are separated by 67 nucleotides HMPREF1058_RS17365 and HMPREF1058_RS17360 are separated by 527 nucleotides
HMPREF1058_RS17380: HMPREF1058_RS17380 - DUF3987 domain-containing protein, at 456,609 to 458,987
_RS17380
HMPREF1058_RS17375: HMPREF1058_RS17375 - hypothetical protein, at 459,186 to 459,383
_RS17375
HMPREF1058_RS17370: HMPREF1058_RS17370 - UpxY family transcription antiterminator, at 459,661 to 460,161
_RS17370
HMPREF1058_RS17365: HMPREF1058_RS17365 - nucleotidyltransferase domain-containing protein, at 460,229 to 460,519
_RS17365
HMPREF1058_RS17360: HMPREF1058_RS17360 - hypothetical protein, at 461,047 to 462,564
_RS17360
Position (kb) 459
460
461 Strain fitness (log2 ratio) -2
-1
0
1 at 458.959 kb on + strand at 458.959 kb on + strand at 459.047 kb on + strand at 459.466 kb on - strand at 459.682 kb on + strand at 459.683 kb on - strand at 459.756 kb on - strand, within HMPREF1058_RS17370 at 459.836 kb on + strand, within HMPREF1058_RS17370 at 459.837 kb on - strand, within HMPREF1058_RS17370 at 459.887 kb on - strand, within HMPREF1058_RS17370 at 460.095 kb on - strand, within HMPREF1058_RS17370 at 460.160 kb on - strand at 460.160 kb on - strand at 460.270 kb on - strand, within HMPREF1058_RS17365 at 460.303 kb on - strand, within HMPREF1058_RS17365 at 460.303 kb on - strand at 460.390 kb on - strand, within HMPREF1058_RS17365 at 460.483 kb on - strand, within HMPREF1058_RS17365 at 460.542 kb on + strand at 460.542 kb on + strand at 460.633 kb on + strand at 460.640 kb on + strand at 460.670 kb on + strand at 460.670 kb on + strand at 460.671 kb on - strand at 460.742 kb on - strand at 460.748 kb on + strand at 460.748 kb on + strand at 460.749 kb on - strand at 460.752 kb on - strand at 460.814 kb on + strand at 460.814 kb on + strand at 460.814 kb on + strand at 460.831 kb on + strand at 460.831 kb on + strand at 460.904 kb on - strand at 460.941 kb on - strand at 460.994 kb on + strand at 460.994 kb on + strand at 460.999 kb on - strand at 461.002 kb on - strand at 461.102 kb on + strand at 461.102 kb on + strand at 461.107 kb on - strand at 461.116 kb on - strand at 461.127 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3 remove 458,959 + -0.8 458,959 + -0.4 459,047 + -0.3 459,466 - -0.3 459,682 + -0.3 459,683 - -1.3 459,756 - HMPREF1058_RS17370 0.19 +0.7 459,836 + HMPREF1058_RS17370 0.35 +0.0 459,837 - HMPREF1058_RS17370 0.35 +0.9 459,887 - HMPREF1058_RS17370 0.45 +1.5 460,095 - HMPREF1058_RS17370 0.87 +1.0 460,160 - -1.9 460,160 - -0.7 460,270 - HMPREF1058_RS17365 0.14 +0.4 460,303 - HMPREF1058_RS17365 0.25 +0.1 460,303 - -0.9 460,390 - HMPREF1058_RS17365 0.55 -0.2 460,483 - HMPREF1058_RS17365 0.87 +0.4 460,542 + +0.2 460,542 + +0.3 460,633 + -0.4 460,640 + -0.3 460,670 + +0.2 460,670 + +0.4 460,671 - +0.8 460,742 - +0.9 460,748 + -1.4 460,748 + +0.6 460,749 - -1.0 460,752 - +1.6 460,814 + -0.6 460,814 + -0.4 460,814 + +0.1 460,831 + -0.9 460,831 + -0.3 460,904 - -0.1 460,941 - -1.4 460,994 + -1.1 460,994 + -1.0 460,999 - +1.7 461,002 - +0.1 461,102 + +0.4 461,102 + -1.4 461,107 - -0.4 461,116 - +1.0 461,127 - +0.5
Or see this region's nucleotide sequence