Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS17285

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1058_RS17295 and HMPREF1058_RS17290 are separated by 11 nucleotidesHMPREF1058_RS17290 and HMPREF1058_RS17285 are separated by 28 nucleotidesHMPREF1058_RS17285 and HMPREF1058_RS17280 are separated by 82 nucleotides HMPREF1058_RS17295: HMPREF1058_RS17295 - acyltransferase family protein, at 475,040 to 475,999 _RS17295 HMPREF1058_RS17290: HMPREF1058_RS17290 - glycosyltransferase family 2 protein, at 476,011 to 476,916 _RS17290 HMPREF1058_RS17285: HMPREF1058_RS17285 - glycosyltransferase, at 476,945 to 477,763 _RS17285 HMPREF1058_RS17280: HMPREF1058_RS17280 - GDP-mannose 4,6-dehydratase, at 477,846 to 478,925 _RS17280 Position (kb) 476 477 478Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 475.984 kb on + strandat 475.985 kb on - strandat 475.985 kb on - strandat 475.985 kb on - strandat 475.988 kb on + strandat 476.040 kb on + strandat 476.041 kb on - strandat 476.044 kb on + strandat 476.044 kb on + strandat 476.044 kb on + strandat 476.045 kb on - strandat 476.061 kb on + strandat 476.061 kb on + strandat 476.061 kb on + strandat 476.062 kb on - strandat 476.063 kb on + strandat 476.064 kb on - strandat 476.105 kb on + strand, within HMPREF1058_RS17290at 476.345 kb on - strand, within HMPREF1058_RS17290at 476.636 kb on + strand, within HMPREF1058_RS17290at 476.637 kb on - strand, within HMPREF1058_RS17290at 476.637 kb on - strand, within HMPREF1058_RS17290at 476.694 kb on + strand, within HMPREF1058_RS17290at 476.695 kb on - strand, within HMPREF1058_RS17290at 476.697 kb on - strand, within HMPREF1058_RS17290at 476.725 kb on - strand, within HMPREF1058_RS17290at 476.738 kb on + strand, within HMPREF1058_RS17290at 476.739 kb on - strand, within HMPREF1058_RS17290at 476.739 kb on - strand, within HMPREF1058_RS17290at 476.739 kb on - strand, within HMPREF1058_RS17290at 476.739 kb on - strand, within HMPREF1058_RS17290at 476.739 kb on - strand, within HMPREF1058_RS17290at 476.739 kb on - strand, within HMPREF1058_RS17290at 476.743 kb on + strand, within HMPREF1058_RS17290at 476.784 kb on + strand, within HMPREF1058_RS17290at 476.785 kb on - strand, within HMPREF1058_RS17290at 476.902 kb on + strandat 476.911 kb on - strandat 476.922 kb on + strandat 476.922 kb on + strandat 476.923 kb on - strandat 476.929 kb on + strandat 477.004 kb on - strandat 477.036 kb on + strand, within HMPREF1058_RS17285at 477.036 kb on + strand, within HMPREF1058_RS17285at 477.036 kb on + strand, within HMPREF1058_RS17285at 477.112 kb on + strand, within HMPREF1058_RS17285at 477.112 kb on + strand, within HMPREF1058_RS17285at 477.139 kb on + strand, within HMPREF1058_RS17285at 477.143 kb on + strand, within HMPREF1058_RS17285at 477.143 kb on + strand, within HMPREF1058_RS17285at 477.144 kb on - strand, within HMPREF1058_RS17285at 477.144 kb on - strand, within HMPREF1058_RS17285at 477.165 kb on + strand, within HMPREF1058_RS17285at 477.165 kb on + strand, within HMPREF1058_RS17285at 477.280 kb on - strand, within HMPREF1058_RS17285at 477.281 kb on + strand, within HMPREF1058_RS17285at 477.281 kb on + strand, within HMPREF1058_RS17285at 477.281 kb on + strand, within HMPREF1058_RS17285at 477.301 kb on - strand, within HMPREF1058_RS17285at 477.301 kb on - strand, within HMPREF1058_RS17285at 477.355 kb on + strand, within HMPREF1058_RS17285at 477.403 kb on + strand, within HMPREF1058_RS17285at 477.404 kb on - strand, within HMPREF1058_RS17285at 477.512 kb on + strand, within HMPREF1058_RS17285at 477.515 kb on + strand, within HMPREF1058_RS17285at 477.609 kb on - strand, within HMPREF1058_RS17285at 477.624 kb on + strand, within HMPREF1058_RS17285at 477.625 kb on - strand, within HMPREF1058_RS17285at 477.732 kb on + strandat 477.792 kb on + strandat 477.793 kb on - strandat 477.814 kb on + strandat 477.934 kb on + strandat 477.934 kb on + strandat 477.935 kb on - strandat 477.965 kb on + strand, within HMPREF1058_RS17280at 477.965 kb on + strand, within HMPREF1058_RS17280at 477.965 kb on + strand, within HMPREF1058_RS17280at 477.977 kb on + strand, within HMPREF1058_RS17280at 477.980 kb on - strand, within HMPREF1058_RS17280at 478.064 kb on + strand, within HMPREF1058_RS17280at 478.080 kb on - strand, within HMPREF1058_RS17280at 478.080 kb on - strand, within HMPREF1058_RS17280at 478.080 kb on - strand, within HMPREF1058_RS17280at 478.080 kb on - strand, within HMPREF1058_RS17280at 478.084 kb on + strand, within HMPREF1058_RS17280at 478.094 kb on - strandat 478.135 kb on + strand, within HMPREF1058_RS17280at 478.135 kb on + strand, within HMPREF1058_RS17280at 478.136 kb on - strand, within HMPREF1058_RS17280at 478.214 kb on + strand, within HMPREF1058_RS17280at 478.214 kb on + strand, within HMPREF1058_RS17280at 478.214 kb on + strand, within HMPREF1058_RS17280at 478.214 kb on + strand, within HMPREF1058_RS17280at 478.214 kb on + strand, within HMPREF1058_RS17280at 478.217 kb on - strand, within HMPREF1058_RS17280at 478.348 kb on - strand, within HMPREF1058_RS17280at 478.502 kb on + strand, within HMPREF1058_RS17280at 478.502 kb on + strand, within HMPREF1058_RS17280at 478.509 kb on + strand, within HMPREF1058_RS17280at 478.558 kb on - strand, within HMPREF1058_RS17280at 478.568 kb on + strand, within HMPREF1058_RS17280at 478.568 kb on + strand, within HMPREF1058_RS17280at 478.568 kb on + strand, within HMPREF1058_RS17280at 478.568 kb on + strand, within HMPREF1058_RS17280at 478.569 kb on - strand, within HMPREF1058_RS17280at 478.610 kb on + strand, within HMPREF1058_RS17280at 478.716 kb on - strand, within HMPREF1058_RS17280at 478.728 kb on - strand, within HMPREF1058_RS17280at 478.761 kb on + strand, within HMPREF1058_RS17280at 478.762 kb on - strand, within HMPREF1058_RS17280

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
remove
475,984 + +1.2
475,985 - -0.9
475,985 - +0.2
475,985 - +0.6
475,988 + -2.6
476,040 + +0.3
476,041 - +1.1
476,044 + +0.6
476,044 + -0.3
476,044 + -1.6
476,045 - +0.5
476,061 + -2.2
476,061 + +0.0
476,061 + +0.3
476,062 - -0.2
476,063 + +0.8
476,064 - +0.6
476,105 + HMPREF1058_RS17290 0.10 +1.4
476,345 - HMPREF1058_RS17290 0.37 -0.6
476,636 + HMPREF1058_RS17290 0.69 +0.1
476,637 - HMPREF1058_RS17290 0.69 +2.5
476,637 - HMPREF1058_RS17290 0.69 +0.2
476,694 + HMPREF1058_RS17290 0.75 -1.1
476,695 - HMPREF1058_RS17290 0.75 -0.1
476,697 - HMPREF1058_RS17290 0.76 +0.0
476,725 - HMPREF1058_RS17290 0.79 -0.4
476,738 + HMPREF1058_RS17290 0.80 +0.1
476,739 - HMPREF1058_RS17290 0.80 +0.1
476,739 - HMPREF1058_RS17290 0.80 -0.7
476,739 - HMPREF1058_RS17290 0.80 -1.9
476,739 - HMPREF1058_RS17290 0.80 -1.9
476,739 - HMPREF1058_RS17290 0.80 +0.7
476,739 - HMPREF1058_RS17290 0.80 -0.7
476,743 + HMPREF1058_RS17290 0.81 +0.9
476,784 + HMPREF1058_RS17290 0.85 -1.6
476,785 - HMPREF1058_RS17290 0.85 +0.0
476,902 + +0.6
476,911 - +0.1
476,922 + -1.4
476,922 + +0.1
476,923 - +0.9
476,929 + +0.4
477,004 - -1.6
477,036 + HMPREF1058_RS17285 0.11 +0.3
477,036 + HMPREF1058_RS17285 0.11 +0.9
477,036 + HMPREF1058_RS17285 0.11 +0.7
477,112 + HMPREF1058_RS17285 0.20 +0.0
477,112 + HMPREF1058_RS17285 0.20 +1.0
477,139 + HMPREF1058_RS17285 0.24 +0.7
477,143 + HMPREF1058_RS17285 0.24 +2.1
477,143 + HMPREF1058_RS17285 0.24 +0.6
477,144 - HMPREF1058_RS17285 0.24 +0.4
477,144 - HMPREF1058_RS17285 0.24 +0.1
477,165 + HMPREF1058_RS17285 0.27 +0.5
477,165 + HMPREF1058_RS17285 0.27 +0.6
477,280 - HMPREF1058_RS17285 0.41 -1.8
477,281 + HMPREF1058_RS17285 0.41 +0.4
477,281 + HMPREF1058_RS17285 0.41 +0.7
477,281 + HMPREF1058_RS17285 0.41 +0.7
477,301 - HMPREF1058_RS17285 0.43 -0.6
477,301 - HMPREF1058_RS17285 0.43 +0.0
477,355 + HMPREF1058_RS17285 0.50 -0.2
477,403 + HMPREF1058_RS17285 0.56 +0.6
477,404 - HMPREF1058_RS17285 0.56 -0.1
477,512 + HMPREF1058_RS17285 0.69 +0.6
477,515 + HMPREF1058_RS17285 0.70 +0.8
477,609 - HMPREF1058_RS17285 0.81 -0.0
477,624 + HMPREF1058_RS17285 0.83 +1.1
477,625 - HMPREF1058_RS17285 0.83 -3.0
477,732 + +1.3
477,792 + -1.0
477,793 - -0.9
477,814 + +0.2
477,934 + +0.7
477,934 + +1.1
477,935 - -0.4
477,965 + HMPREF1058_RS17280 0.11 -0.7
477,965 + HMPREF1058_RS17280 0.11 -0.3
477,965 + HMPREF1058_RS17280 0.11 +0.2
477,977 + HMPREF1058_RS17280 0.12 -0.5
477,980 - HMPREF1058_RS17280 0.12 +0.1
478,064 + HMPREF1058_RS17280 0.20 -0.2
478,080 - HMPREF1058_RS17280 0.22 +0.4
478,080 - HMPREF1058_RS17280 0.22 +0.1
478,080 - HMPREF1058_RS17280 0.22 +0.3
478,080 - HMPREF1058_RS17280 0.22 -2.7
478,084 + HMPREF1058_RS17280 0.22 +0.0
478,094 - -0.4
478,135 + HMPREF1058_RS17280 0.27 +0.1
478,135 + HMPREF1058_RS17280 0.27 +0.7
478,136 - HMPREF1058_RS17280 0.27 -0.8
478,214 + HMPREF1058_RS17280 0.34 +0.5
478,214 + HMPREF1058_RS17280 0.34 -0.3
478,214 + HMPREF1058_RS17280 0.34 +0.6
478,214 + HMPREF1058_RS17280 0.34 -0.4
478,214 + HMPREF1058_RS17280 0.34 -0.6
478,217 - HMPREF1058_RS17280 0.34 +0.9
478,348 - HMPREF1058_RS17280 0.46 +0.0
478,502 + HMPREF1058_RS17280 0.61 +0.5
478,502 + HMPREF1058_RS17280 0.61 +0.6
478,509 + HMPREF1058_RS17280 0.61 -0.2
478,558 - HMPREF1058_RS17280 0.66 +0.1
478,568 + HMPREF1058_RS17280 0.67 -0.2
478,568 + HMPREF1058_RS17280 0.67 +0.9
478,568 + HMPREF1058_RS17280 0.67 +0.9
478,568 + HMPREF1058_RS17280 0.67 +0.8
478,569 - HMPREF1058_RS17280 0.67 -0.0
478,610 + HMPREF1058_RS17280 0.71 -0.3
478,716 - HMPREF1058_RS17280 0.81 +0.9
478,728 - HMPREF1058_RS17280 0.82 +0.1
478,761 + HMPREF1058_RS17280 0.85 +0.3
478,762 - HMPREF1058_RS17280 0.85 -1.9

Or see this region's nucleotide sequence