Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS17105

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS17110 and HMPREF1058_RS17105 are separated by 222 nucleotidesHMPREF1058_RS17105 and HMPREF1058_RS17100 are separated by 154 nucleotides HMPREF1058_RS17110: HMPREF1058_RS17110 - pirin family protein, at 519,269 to 519,973 _RS17110 HMPREF1058_RS17105: HMPREF1058_RS17105 - hypothetical protein, at 520,196 to 520,489 _RS17105 HMPREF1058_RS17100: HMPREF1058_RS17100 - exodeoxyribonuclease III, at 520,644 to 521,402 _RS17100 Position (kb) 520 521Strain fitness (log2 ratio) -3 -2 -1 0 1at 519.222 kb on - strandat 519.222 kb on - strandat 519.230 kb on - strandat 519.231 kb on + strandat 519.264 kb on - strandat 519.264 kb on - strandat 519.311 kb on - strandat 519.357 kb on - strand, within HMPREF1058_RS17110at 519.359 kb on + strand, within HMPREF1058_RS17110at 519.359 kb on + strand, within HMPREF1058_RS17110at 519.374 kb on - strand, within HMPREF1058_RS17110at 519.374 kb on - strand, within HMPREF1058_RS17110at 519.454 kb on + strand, within HMPREF1058_RS17110at 519.462 kb on + strand, within HMPREF1058_RS17110at 519.463 kb on - strand, within HMPREF1058_RS17110at 519.463 kb on - strand, within HMPREF1058_RS17110at 519.502 kb on + strand, within HMPREF1058_RS17110at 519.546 kb on + strand, within HMPREF1058_RS17110at 519.547 kb on - strand, within HMPREF1058_RS17110at 519.547 kb on - strand, within HMPREF1058_RS17110at 519.565 kb on + strand, within HMPREF1058_RS17110at 519.565 kb on + strandat 519.570 kb on - strand, within HMPREF1058_RS17110at 519.570 kb on - strand, within HMPREF1058_RS17110at 519.581 kb on + strand, within HMPREF1058_RS17110at 519.639 kb on + strand, within HMPREF1058_RS17110at 519.640 kb on - strand, within HMPREF1058_RS17110at 519.664 kb on + strand, within HMPREF1058_RS17110at 519.664 kb on + strand, within HMPREF1058_RS17110at 519.665 kb on - strand, within HMPREF1058_RS17110at 519.668 kb on + strand, within HMPREF1058_RS17110at 519.670 kb on + strand, within HMPREF1058_RS17110at 519.670 kb on + strand, within HMPREF1058_RS17110at 519.768 kb on + strand, within HMPREF1058_RS17110at 519.772 kb on + strand, within HMPREF1058_RS17110at 519.791 kb on - strand, within HMPREF1058_RS17110at 519.796 kb on - strand, within HMPREF1058_RS17110at 519.796 kb on - strand, within HMPREF1058_RS17110at 519.798 kb on + strand, within HMPREF1058_RS17110at 519.798 kb on + strand, within HMPREF1058_RS17110at 519.799 kb on - strand, within HMPREF1058_RS17110at 519.800 kb on + strand, within HMPREF1058_RS17110at 519.800 kb on + strand, within HMPREF1058_RS17110at 519.805 kb on + strand, within HMPREF1058_RS17110at 519.862 kb on - strand, within HMPREF1058_RS17110at 519.862 kb on - strand, within HMPREF1058_RS17110at 519.899 kb on - strand, within HMPREF1058_RS17110at 519.964 kb on - strandat 519.967 kb on + strandat 519.968 kb on - strandat 519.968 kb on - strandat 519.971 kb on + strandat 519.972 kb on - strandat 519.972 kb on - strandat 519.972 kb on - strandat 519.979 kb on - strandat 519.979 kb on - strandat 520.024 kb on + strandat 520.032 kb on + strandat 520.032 kb on + strandat 520.141 kb on + strandat 520.142 kb on - strandat 520.142 kb on - strandat 520.161 kb on - strandat 520.162 kb on + strandat 520.163 kb on - strandat 520.164 kb on + strandat 520.164 kb on + strandat 520.165 kb on - strandat 520.165 kb on - strandat 520.165 kb on - strandat 520.165 kb on - strandat 520.165 kb on - strandat 520.182 kb on - strandat 520.197 kb on + strandat 520.199 kb on + strandat 520.231 kb on + strand, within HMPREF1058_RS17105at 520.277 kb on + strand, within HMPREF1058_RS17105at 520.277 kb on + strand, within HMPREF1058_RS17105at 520.278 kb on - strand, within HMPREF1058_RS17105at 520.278 kb on - strand, within HMPREF1058_RS17105at 520.283 kb on - strand, within HMPREF1058_RS17105at 520.350 kb on + strand, within HMPREF1058_RS17105at 520.417 kb on + strand, within HMPREF1058_RS17105at 520.458 kb on + strand, within HMPREF1058_RS17105at 520.462 kb on + strandat 520.465 kb on - strandat 520.468 kb on + strandat 520.469 kb on - strandat 520.474 kb on + strandat 520.492 kb on + strandat 520.510 kb on + strandat 520.517 kb on - strandat 520.589 kb on + strandat 520.596 kb on - strandat 520.599 kb on + strandat 520.600 kb on - strandat 520.645 kb on + strandat 520.665 kb on + strandat 520.699 kb on + strandat 520.700 kb on - strandat 520.703 kb on + strandat 520.703 kb on + strandat 520.704 kb on - strandat 520.787 kb on + strand, within HMPREF1058_RS17100at 520.810 kb on + strand, within HMPREF1058_RS17100at 520.811 kb on - strand, within HMPREF1058_RS17100at 520.886 kb on + strand, within HMPREF1058_RS17100at 520.944 kb on + strand, within HMPREF1058_RS17100at 520.944 kb on + strand, within HMPREF1058_RS17100at 521.084 kb on + strand, within HMPREF1058_RS17100at 521.087 kb on - strand, within HMPREF1058_RS17100at 521.167 kb on + strand, within HMPREF1058_RS17100at 521.234 kb on - strand, within HMPREF1058_RS17100at 521.323 kb on - strand, within HMPREF1058_RS17100at 521.377 kb on - strandat 521.412 kb on - strandat 521.414 kb on + strandat 521.447 kb on + strandat 521.462 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
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519,222 - -0.3
519,222 - -0.5
519,230 - +0.1
519,231 + -0.9
519,264 - +0.4
519,264 - -2.7
519,311 - +0.0
519,357 - HMPREF1058_RS17110 0.12 +0.2
519,359 + HMPREF1058_RS17110 0.13 -0.0
519,359 + HMPREF1058_RS17110 0.13 -1.8
519,374 - HMPREF1058_RS17110 0.15 -3.1
519,374 - HMPREF1058_RS17110 0.15 -0.3
519,454 + HMPREF1058_RS17110 0.26 +0.0
519,462 + HMPREF1058_RS17110 0.27 +0.2
519,463 - HMPREF1058_RS17110 0.28 +0.3
519,463 - HMPREF1058_RS17110 0.28 -0.6
519,502 + HMPREF1058_RS17110 0.33 +0.9
519,546 + HMPREF1058_RS17110 0.39 -0.3
519,547 - HMPREF1058_RS17110 0.39 -2.1
519,547 - HMPREF1058_RS17110 0.39 +0.4
519,565 + HMPREF1058_RS17110 0.42 +0.2
519,565 + +0.1
519,570 - HMPREF1058_RS17110 0.43 -1.5
519,570 - HMPREF1058_RS17110 0.43 -1.1
519,581 + HMPREF1058_RS17110 0.44 -1.6
519,639 + HMPREF1058_RS17110 0.52 +0.9
519,640 - HMPREF1058_RS17110 0.53 +0.1
519,664 + HMPREF1058_RS17110 0.56 -1.0
519,664 + HMPREF1058_RS17110 0.56 +0.5
519,665 - HMPREF1058_RS17110 0.56 +0.1
519,668 + HMPREF1058_RS17110 0.57 -2.8
519,670 + HMPREF1058_RS17110 0.57 +0.8
519,670 + HMPREF1058_RS17110 0.57 +0.1
519,768 + HMPREF1058_RS17110 0.71 -0.3
519,772 + HMPREF1058_RS17110 0.71 +0.2
519,791 - HMPREF1058_RS17110 0.74 +0.5
519,796 - HMPREF1058_RS17110 0.75 +0.4
519,796 - HMPREF1058_RS17110 0.75 +0.1
519,798 + HMPREF1058_RS17110 0.75 +0.2
519,798 + HMPREF1058_RS17110 0.75 +0.5
519,799 - HMPREF1058_RS17110 0.75 +0.2
519,800 + HMPREF1058_RS17110 0.75 -0.1
519,800 + HMPREF1058_RS17110 0.75 +1.7
519,805 + HMPREF1058_RS17110 0.76 +0.7
519,862 - HMPREF1058_RS17110 0.84 -0.8
519,862 - HMPREF1058_RS17110 0.84 -1.8
519,899 - HMPREF1058_RS17110 0.89 -0.3
519,964 - +0.7
519,967 + +0.3
519,968 - -0.9
519,968 - -1.5
519,971 + +0.0
519,972 - +0.1
519,972 - +0.1
519,972 - +0.8
519,979 - +0.1
519,979 - +0.3
520,024 + -0.4
520,032 + +0.3
520,032 + +0.3
520,141 + +0.6
520,142 - +0.4
520,142 - +0.1
520,161 - +0.6
520,162 + +0.4
520,163 - +0.5
520,164 + +0.3
520,164 + -2.3
520,165 - -0.2
520,165 - -1.1
520,165 - -0.5
520,165 - +0.8
520,165 - -0.3
520,182 - +1.4
520,197 + +0.4
520,199 + -0.7
520,231 + HMPREF1058_RS17105 0.12 +0.3
520,277 + HMPREF1058_RS17105 0.28 +0.8
520,277 + HMPREF1058_RS17105 0.28 +0.6
520,278 - HMPREF1058_RS17105 0.28 +0.0
520,278 - HMPREF1058_RS17105 0.28 +0.4
520,283 - HMPREF1058_RS17105 0.30 +0.3
520,350 + HMPREF1058_RS17105 0.52 +0.9
520,417 + HMPREF1058_RS17105 0.75 -0.1
520,458 + HMPREF1058_RS17105 0.89 -0.4
520,462 + +0.3
520,465 - +0.5
520,468 + +1.0
520,469 - -2.0
520,474 + -0.0
520,492 + +0.1
520,510 + +0.6
520,517 - +0.7
520,589 + +0.1
520,596 - -0.2
520,599 + +1.1
520,600 - -0.9
520,645 + +1.3
520,665 + +1.1
520,699 + +0.4
520,700 - +0.6
520,703 + +0.3
520,703 + -0.2
520,704 - -1.0
520,787 + HMPREF1058_RS17100 0.19 -0.2
520,810 + HMPREF1058_RS17100 0.22 -2.3
520,811 - HMPREF1058_RS17100 0.22 +0.4
520,886 + HMPREF1058_RS17100 0.32 -1.6
520,944 + HMPREF1058_RS17100 0.40 -2.4
520,944 + HMPREF1058_RS17100 0.40 +0.5
521,084 + HMPREF1058_RS17100 0.58 +0.2
521,087 - HMPREF1058_RS17100 0.58 +1.0
521,167 + HMPREF1058_RS17100 0.69 +0.7
521,234 - HMPREF1058_RS17100 0.78 -0.6
521,323 - HMPREF1058_RS17100 0.89 -0.8
521,377 - -0.7
521,412 - +0.1
521,414 + +0.6
521,447 + -2.9
521,462 - -0.7

Or see this region's nucleotide sequence