Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16835 and HMPREF1058_RS16830 are separated by 34 nucleotides HMPREF1058_RS16830 and HMPREF1058_RS16825 overlap by 1 nucleotides HMPREF1058_RS16825 and HMPREF1058_RS16820 are separated by 10 nucleotides
HMPREF1058_RS16835: HMPREF1058_RS16835 - ketol-acid reductoisomerase, at 584,108 to 585,151
_RS16835
HMPREF1058_RS16830: HMPREF1058_RS16830 - acyl-ACP thioesterase, at 585,186 to 585,929
_RS16830
HMPREF1058_RS16825: HMPREF1058_RS16825 - acetolactate synthase small subunit, at 585,929 to 586,483
_RS16825
HMPREF1058_RS16820: HMPREF1058_RS16820 - biosynthetic-type acetolactate synthase large subunit, at 586,494 to 588,191
_RS16820
Position (kb) 585
586 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 584.215 kb on + strand, within HMPREF1058_RS16835 at 584.221 kb on + strand, within HMPREF1058_RS16835 at 584.270 kb on + strand, within HMPREF1058_RS16835 at 584.282 kb on + strand, within HMPREF1058_RS16835 at 584.344 kb on + strand, within HMPREF1058_RS16835 at 584.344 kb on + strand, within HMPREF1058_RS16835 at 584.345 kb on - strand, within HMPREF1058_RS16835 at 584.353 kb on + strand, within HMPREF1058_RS16835 at 584.358 kb on + strand, within HMPREF1058_RS16835 at 584.359 kb on - strand, within HMPREF1058_RS16835 at 584.359 kb on - strand, within HMPREF1058_RS16835 at 584.359 kb on - strand, within HMPREF1058_RS16835 at 584.408 kb on + strand, within HMPREF1058_RS16835 at 584.465 kb on + strand, within HMPREF1058_RS16835 at 584.465 kb on + strand, within HMPREF1058_RS16835 at 584.602 kb on + strand, within HMPREF1058_RS16835 at 584.605 kb on + strand, within HMPREF1058_RS16835 at 584.641 kb on + strand, within HMPREF1058_RS16835 at 584.748 kb on - strand, within HMPREF1058_RS16835 at 584.755 kb on + strand, within HMPREF1058_RS16835 at 584.845 kb on + strand, within HMPREF1058_RS16835 at 584.845 kb on + strand, within HMPREF1058_RS16835 at 584.845 kb on + strand, within HMPREF1058_RS16835 at 584.984 kb on + strand, within HMPREF1058_RS16835 at 584.985 kb on - strand, within HMPREF1058_RS16835 at 585.187 kb on + strand at 585.196 kb on - strand at 585.244 kb on - strand at 585.246 kb on - strand at 585.250 kb on + strand at 585.250 kb on + strand at 585.291 kb on - strand, within HMPREF1058_RS16830 at 585.298 kb on + strand, within HMPREF1058_RS16830 at 585.299 kb on - strand, within HMPREF1058_RS16830 at 585.302 kb on - strand, within HMPREF1058_RS16830 at 585.313 kb on - strand, within HMPREF1058_RS16830 at 585.316 kb on + strand, within HMPREF1058_RS16830 at 585.362 kb on + strand, within HMPREF1058_RS16830 at 585.387 kb on + strand, within HMPREF1058_RS16830 at 585.387 kb on + strand, within HMPREF1058_RS16830 at 585.388 kb on - strand, within HMPREF1058_RS16830 at 585.388 kb on - strand, within HMPREF1058_RS16830 at 585.389 kb on + strand, within HMPREF1058_RS16830 at 585.390 kb on - strand, within HMPREF1058_RS16830 at 585.392 kb on - strand, within HMPREF1058_RS16830 at 585.396 kb on - strand, within HMPREF1058_RS16830 at 585.396 kb on - strand, within HMPREF1058_RS16830 at 585.399 kb on - strand, within HMPREF1058_RS16830 at 585.399 kb on - strand, within HMPREF1058_RS16830 at 585.480 kb on - strand, within HMPREF1058_RS16830 at 585.496 kb on - strand, within HMPREF1058_RS16830 at 585.497 kb on + strand, within HMPREF1058_RS16830 at 585.516 kb on + strand, within HMPREF1058_RS16830 at 585.520 kb on + strand, within HMPREF1058_RS16830 at 585.521 kb on - strand, within HMPREF1058_RS16830 at 585.521 kb on - strand, within HMPREF1058_RS16830 at 585.521 kb on - strand, within HMPREF1058_RS16830 at 585.531 kb on - strand, within HMPREF1058_RS16830 at 585.533 kb on + strand, within HMPREF1058_RS16830 at 585.657 kb on - strand, within HMPREF1058_RS16830 at 585.707 kb on - strand, within HMPREF1058_RS16830 at 585.719 kb on + strand, within HMPREF1058_RS16830 at 585.720 kb on - strand, within HMPREF1058_RS16830 at 585.732 kb on + strand, within HMPREF1058_RS16830 at 585.758 kb on + strand, within HMPREF1058_RS16830 at 585.759 kb on - strand, within HMPREF1058_RS16830 at 585.780 kb on - strand, within HMPREF1058_RS16830 at 585.901 kb on + strand at 586.003 kb on + strand, within HMPREF1058_RS16825 at 586.004 kb on - strand, within HMPREF1058_RS16825 at 586.079 kb on - strand, within HMPREF1058_RS16825 at 586.133 kb on + strand, within HMPREF1058_RS16825 at 586.148 kb on - strand, within HMPREF1058_RS16825 at 586.210 kb on - strand, within HMPREF1058_RS16825 at 586.230 kb on + strand, within HMPREF1058_RS16825 at 586.252 kb on - strand, within HMPREF1058_RS16825 at 586.252 kb on - strand, within HMPREF1058_RS16825 at 586.331 kb on - strand, within HMPREF1058_RS16825 at 586.333 kb on + strand, within HMPREF1058_RS16825 at 586.334 kb on - strand, within HMPREF1058_RS16825 at 586.334 kb on - strand, within HMPREF1058_RS16825 at 586.334 kb on - strand, within HMPREF1058_RS16825 at 586.337 kb on - strand, within HMPREF1058_RS16825 at 586.339 kb on - strand, within HMPREF1058_RS16825 at 586.442 kb on - strand at 586.466 kb on - strand at 586.466 kb on - strand at 586.467 kb on + strand at 586.469 kb on + strand at 586.469 kb on + strand at 586.470 kb on - strand at 586.483 kb on + strand at 586.491 kb on - strand at 586.495 kb on + strand at 586.687 kb on + strand, within HMPREF1058_RS16820 at 586.736 kb on + strand, within HMPREF1058_RS16820 at 586.864 kb on - strand, within HMPREF1058_RS16820 at 586.869 kb on + strand, within HMPREF1058_RS16820 at 586.895 kb on + strand, within HMPREF1058_RS16820 at 586.905 kb on - strand, within HMPREF1058_RS16820
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3 remove 584,215 + HMPREF1058_RS16835 0.10 -2.2 584,221 + HMPREF1058_RS16835 0.11 -1.6 584,270 + HMPREF1058_RS16835 0.16 -2.3 584,282 + HMPREF1058_RS16835 0.17 -2.7 584,344 + HMPREF1058_RS16835 0.23 -1.6 584,344 + HMPREF1058_RS16835 0.23 -1.9 584,345 - HMPREF1058_RS16835 0.23 -0.9 584,353 + HMPREF1058_RS16835 0.23 -2.1 584,358 + HMPREF1058_RS16835 0.24 -1.7 584,359 - HMPREF1058_RS16835 0.24 -1.6 584,359 - HMPREF1058_RS16835 0.24 -1.8 584,359 - HMPREF1058_RS16835 0.24 -1.6 584,408 + HMPREF1058_RS16835 0.29 -1.5 584,465 + HMPREF1058_RS16835 0.34 -1.8 584,465 + HMPREF1058_RS16835 0.34 -0.7 584,602 + HMPREF1058_RS16835 0.47 -1.7 584,605 + HMPREF1058_RS16835 0.48 -3.5 584,641 + HMPREF1058_RS16835 0.51 -1.6 584,748 - HMPREF1058_RS16835 0.61 -0.9 584,755 + HMPREF1058_RS16835 0.62 -1.9 584,845 + HMPREF1058_RS16835 0.71 -2.2 584,845 + HMPREF1058_RS16835 0.71 -2.9 584,845 + HMPREF1058_RS16835 0.71 +1.1 584,984 + HMPREF1058_RS16835 0.84 -1.5 584,985 - HMPREF1058_RS16835 0.84 -0.7 585,187 + -2.9 585,196 - +1.9 585,244 - +0.6 585,246 - +0.1 585,250 + +0.4 585,250 + -1.4 585,291 - HMPREF1058_RS16830 0.14 +0.7 585,298 + HMPREF1058_RS16830 0.15 -0.9 585,299 - HMPREF1058_RS16830 0.15 +1.5 585,302 - HMPREF1058_RS16830 0.16 +1.9 585,313 - HMPREF1058_RS16830 0.17 +2.2 585,316 + HMPREF1058_RS16830 0.17 -1.7 585,362 + HMPREF1058_RS16830 0.24 -0.6 585,387 + HMPREF1058_RS16830 0.27 +0.4 585,387 + HMPREF1058_RS16830 0.27 +0.7 585,388 - HMPREF1058_RS16830 0.27 +1.8 585,388 - HMPREF1058_RS16830 0.27 +1.5 585,389 + HMPREF1058_RS16830 0.27 -1.1 585,390 - HMPREF1058_RS16830 0.27 +0.8 585,392 - HMPREF1058_RS16830 0.28 +1.6 585,396 - HMPREF1058_RS16830 0.28 +0.8 585,396 - HMPREF1058_RS16830 0.28 +1.5 585,399 - HMPREF1058_RS16830 0.29 +0.6 585,399 - HMPREF1058_RS16830 0.29 +1.0 585,480 - HMPREF1058_RS16830 0.40 +0.3 585,496 - HMPREF1058_RS16830 0.42 +2.3 585,497 + HMPREF1058_RS16830 0.42 -0.7 585,516 + HMPREF1058_RS16830 0.44 -1.1 585,520 + HMPREF1058_RS16830 0.45 -0.0 585,521 - HMPREF1058_RS16830 0.45 +1.3 585,521 - HMPREF1058_RS16830 0.45 +1.8 585,521 - HMPREF1058_RS16830 0.45 +1.1 585,531 - HMPREF1058_RS16830 0.46 +0.2 585,533 + HMPREF1058_RS16830 0.47 -3.2 585,657 - HMPREF1058_RS16830 0.63 +2.0 585,707 - HMPREF1058_RS16830 0.70 +0.9 585,719 + HMPREF1058_RS16830 0.72 -3.0 585,720 - HMPREF1058_RS16830 0.72 +1.3 585,732 + HMPREF1058_RS16830 0.73 -2.3 585,758 + HMPREF1058_RS16830 0.77 -3.0 585,759 - HMPREF1058_RS16830 0.77 +0.7 585,780 - HMPREF1058_RS16830 0.80 +1.2 585,901 + -1.5 586,003 + HMPREF1058_RS16825 0.13 -0.0 586,004 - HMPREF1058_RS16825 0.14 +1.7 586,079 - HMPREF1058_RS16825 0.27 +0.1 586,133 + HMPREF1058_RS16825 0.37 +0.3 586,148 - HMPREF1058_RS16825 0.39 -0.3 586,210 - HMPREF1058_RS16825 0.51 +1.1 586,230 + HMPREF1058_RS16825 0.54 -0.4 586,252 - HMPREF1058_RS16825 0.58 +0.4 586,252 - HMPREF1058_RS16825 0.58 -0.4 586,331 - HMPREF1058_RS16825 0.72 +0.1 586,333 + HMPREF1058_RS16825 0.73 +0.4 586,334 - HMPREF1058_RS16825 0.73 +0.1 586,334 - HMPREF1058_RS16825 0.73 -0.7 586,334 - HMPREF1058_RS16825 0.73 -0.1 586,337 - HMPREF1058_RS16825 0.74 +1.8 586,339 - HMPREF1058_RS16825 0.74 -0.3 586,442 - -1.5 586,466 - -1.8 586,466 - -0.4 586,467 + -0.0 586,469 + -1.4 586,469 + -0.7 586,470 - +0.0 586,483 + -0.4 586,491 - +1.1 586,495 + -0.2 586,687 + HMPREF1058_RS16820 0.11 -0.5 586,736 + HMPREF1058_RS16820 0.14 -1.7 586,864 - HMPREF1058_RS16820 0.22 +1.1 586,869 + HMPREF1058_RS16820 0.22 +0.0 586,895 + HMPREF1058_RS16820 0.24 +0.1 586,905 - HMPREF1058_RS16820 0.24 -1.9
Or see this region's nucleotide sequence