Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16530 and HMPREF1058_RS16525 overlap by 1 nucleotides HMPREF1058_RS16525 and HMPREF1058_RS16520 are separated by 2 nucleotides HMPREF1058_RS16520 and HMPREF1058_RS16515 are separated by 45 nucleotides
HMPREF1058_RS16530: HMPREF1058_RS16530 - Rossmann-like and DUF2520 domain-containing protein, at 651,132 to 651,938
_RS16530
HMPREF1058_RS16525: HMPREF1058_RS16525 - hypothetical protein, at 651,938 to 652,264
_RS16525
HMPREF1058_RS16520: HMPREF1058_RS16520 - nitroreductase family protein, at 652,267 to 652,803
_RS16520
HMPREF1058_RS16515: HMPREF1058_RS16515 - GNAT family N-acetyltransferase, at 652,849 to 653,871
_RS16515
Position (kb) 652
653 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 651.400 kb on - strand, within HMPREF1058_RS16530 at 651.407 kb on - strand, within HMPREF1058_RS16530 at 651.567 kb on - strand, within HMPREF1058_RS16530 at 651.606 kb on - strand, within HMPREF1058_RS16530 at 651.646 kb on - strand, within HMPREF1058_RS16530 at 651.660 kb on - strand, within HMPREF1058_RS16530 at 651.672 kb on - strand, within HMPREF1058_RS16530 at 651.748 kb on - strand, within HMPREF1058_RS16530 at 651.753 kb on - strand, within HMPREF1058_RS16530 at 651.755 kb on - strand, within HMPREF1058_RS16530 at 651.755 kb on - strand, within HMPREF1058_RS16530 at 651.775 kb on - strand, within HMPREF1058_RS16530 at 651.853 kb on - strand, within HMPREF1058_RS16530 at 652.026 kb on - strand, within HMPREF1058_RS16525 at 652.056 kb on - strand, within HMPREF1058_RS16525 at 652.056 kb on - strand, within HMPREF1058_RS16525 at 652.120 kb on - strand, within HMPREF1058_RS16525 at 652.236 kb on + strand at 652.237 kb on - strand at 652.237 kb on - strand at 652.241 kb on - strand at 652.363 kb on - strand, within HMPREF1058_RS16520 at 652.405 kb on - strand, within HMPREF1058_RS16520 at 652.405 kb on - strand at 652.571 kb on - strand, within HMPREF1058_RS16520 at 652.579 kb on - strand, within HMPREF1058_RS16520 at 652.678 kb on - strand, within HMPREF1058_RS16520 at 652.724 kb on - strand, within HMPREF1058_RS16520 at 652.807 kb on - strand at 652.807 kb on - strand at 652.807 kb on - strand at 652.807 kb on - strand at 652.840 kb on - strand at 652.846 kb on - strand at 652.886 kb on + strand at 652.965 kb on + strand, within HMPREF1058_RS16515 at 653.031 kb on - strand, within HMPREF1058_RS16515 at 653.155 kb on - strand, within HMPREF1058_RS16515 at 653.281 kb on + strand, within HMPREF1058_RS16515 at 653.307 kb on - strand, within HMPREF1058_RS16515 at 653.511 kb on - strand, within HMPREF1058_RS16515 at 653.587 kb on - strand, within HMPREF1058_RS16515 at 653.587 kb on - strand, within HMPREF1058_RS16515 at 653.614 kb on + strand, within HMPREF1058_RS16515 at 653.634 kb on + strand, within HMPREF1058_RS16515 at 653.647 kb on + strand, within HMPREF1058_RS16515 at 653.688 kb on + strand, within HMPREF1058_RS16515 at 653.689 kb on - strand, within HMPREF1058_RS16515 at 653.696 kb on - strand, within HMPREF1058_RS16515 at 653.696 kb on - strand, within HMPREF1058_RS16515 at 653.775 kb on + strand at 653.776 kb on - strand at 653.776 kb on - strand at 653.776 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3 remove 651,400 - HMPREF1058_RS16530 0.33 -0.6 651,407 - HMPREF1058_RS16530 0.34 +0.1 651,567 - HMPREF1058_RS16530 0.54 -1.1 651,606 - HMPREF1058_RS16530 0.59 -0.1 651,646 - HMPREF1058_RS16530 0.64 +0.9 651,660 - HMPREF1058_RS16530 0.65 -1.7 651,672 - HMPREF1058_RS16530 0.67 -0.2 651,748 - HMPREF1058_RS16530 0.76 -0.2 651,753 - HMPREF1058_RS16530 0.77 -3.4 651,755 - HMPREF1058_RS16530 0.77 -0.3 651,755 - HMPREF1058_RS16530 0.77 +0.2 651,775 - HMPREF1058_RS16530 0.80 +0.4 651,853 - HMPREF1058_RS16530 0.89 +0.1 652,026 - HMPREF1058_RS16525 0.27 +1.4 652,056 - HMPREF1058_RS16525 0.36 -0.6 652,056 - HMPREF1058_RS16525 0.36 +0.5 652,120 - HMPREF1058_RS16525 0.56 +0.7 652,236 + -1.5 652,237 - +0.2 652,237 - +0.6 652,241 - -0.9 652,363 - HMPREF1058_RS16520 0.18 -0.2 652,405 - HMPREF1058_RS16520 0.26 +0.0 652,405 - +1.1 652,571 - HMPREF1058_RS16520 0.57 +0.7 652,579 - HMPREF1058_RS16520 0.58 -0.2 652,678 - HMPREF1058_RS16520 0.77 +1.4 652,724 - HMPREF1058_RS16520 0.85 +0.3 652,807 - +0.1 652,807 - +0.6 652,807 - -0.4 652,807 - -0.3 652,840 - -0.4 652,846 - +0.2 652,886 + -0.9 652,965 + HMPREF1058_RS16515 0.11 +0.4 653,031 - HMPREF1058_RS16515 0.18 +0.7 653,155 - HMPREF1058_RS16515 0.30 +2.1 653,281 + HMPREF1058_RS16515 0.42 +1.8 653,307 - HMPREF1058_RS16515 0.45 -0.7 653,511 - HMPREF1058_RS16515 0.65 +0.4 653,587 - HMPREF1058_RS16515 0.72 +1.2 653,587 - HMPREF1058_RS16515 0.72 +0.6 653,614 + HMPREF1058_RS16515 0.75 +0.7 653,634 + HMPREF1058_RS16515 0.77 +0.1 653,647 + HMPREF1058_RS16515 0.78 +0.3 653,688 + HMPREF1058_RS16515 0.82 +0.6 653,689 - HMPREF1058_RS16515 0.82 +1.9 653,696 - HMPREF1058_RS16515 0.83 +1.1 653,696 - HMPREF1058_RS16515 0.83 -0.6 653,775 + +1.1 653,776 - +0.9 653,776 - +0.5 653,776 - +1.7
Or see this region's nucleotide sequence