Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16410 and HMPREF1058_RS16405 are separated by 178 nucleotides HMPREF1058_RS16405 and HMPREF1058_RS16400 are separated by 92 nucleotides HMPREF1058_RS16400 and HMPREF1058_RS16395 are separated by 214 nucleotides
HMPREF1058_RS16410: HMPREF1058_RS16410 - L-serine ammonia-lyase, at 678,062 to 679,270
_RS16410
HMPREF1058_RS16405: HMPREF1058_RS16405 - PepSY-like domain-containing protein, at 679,449 to 679,889
_RS16405
HMPREF1058_RS16400: HMPREF1058_RS16400 - DUF4738 domain-containing protein, at 679,982 to 680,551
_RS16400
HMPREF1058_RS16395: HMPREF1058_RS16395 - TrkA family potassium uptake protein, at 680,766 to 681,452
_RS16395
Position (kb) 679
680 Strain fitness (log2 ratio) -2
-1
0
1
2 at 678.495 kb on - strand, within HMPREF1058_RS16410 at 678.552 kb on + strand, within HMPREF1058_RS16410 at 678.552 kb on + strand, within HMPREF1058_RS16410 at 678.644 kb on + strand, within HMPREF1058_RS16410 at 678.645 kb on - strand, within HMPREF1058_RS16410 at 678.650 kb on - strand, within HMPREF1058_RS16410 at 678.697 kb on - strand, within HMPREF1058_RS16410 at 678.798 kb on - strand, within HMPREF1058_RS16410 at 678.874 kb on + strand, within HMPREF1058_RS16410 at 678.874 kb on + strand, within HMPREF1058_RS16410 at 678.875 kb on - strand, within HMPREF1058_RS16410 at 678.875 kb on - strand, within HMPREF1058_RS16410 at 678.879 kb on + strand, within HMPREF1058_RS16410 at 678.880 kb on - strand, within HMPREF1058_RS16410 at 678.930 kb on + strand, within HMPREF1058_RS16410 at 679.002 kb on - strand, within HMPREF1058_RS16410 at 679.079 kb on - strand, within HMPREF1058_RS16410 at 679.079 kb on - strand, within HMPREF1058_RS16410 at 679.094 kb on + strand, within HMPREF1058_RS16410 at 679.215 kb on + strand at 679.216 kb on - strand at 679.217 kb on + strand at 679.217 kb on + strand at 679.220 kb on - strand at 679.309 kb on - strand at 679.309 kb on - strand at 679.337 kb on + strand at 679.338 kb on - strand at 679.356 kb on - strand at 679.395 kb on + strand at 679.407 kb on - strand at 679.421 kb on + strand at 679.422 kb on - strand at 679.492 kb on - strand at 679.535 kb on + strand, within HMPREF1058_RS16405 at 679.556 kb on + strand, within HMPREF1058_RS16405 at 679.556 kb on + strand, within HMPREF1058_RS16405 at 679.557 kb on - strand, within HMPREF1058_RS16405 at 679.567 kb on + strand, within HMPREF1058_RS16405 at 679.580 kb on + strand, within HMPREF1058_RS16405 at 679.582 kb on + strand, within HMPREF1058_RS16405 at 679.592 kb on + strand, within HMPREF1058_RS16405 at 679.638 kb on + strand, within HMPREF1058_RS16405 at 679.639 kb on - strand, within HMPREF1058_RS16405 at 679.740 kb on - strand, within HMPREF1058_RS16405 at 679.863 kb on - strand at 679.899 kb on + strand at 679.983 kb on + strand at 680.063 kb on - strand, within HMPREF1058_RS16400 at 680.085 kb on + strand, within HMPREF1058_RS16400 at 680.085 kb on + strand, within HMPREF1058_RS16400 at 680.086 kb on - strand, within HMPREF1058_RS16400 at 680.123 kb on + strand, within HMPREF1058_RS16400 at 680.180 kb on - strand, within HMPREF1058_RS16400 at 680.204 kb on + strand, within HMPREF1058_RS16400 at 680.351 kb on + strand, within HMPREF1058_RS16400 at 680.362 kb on + strand, within HMPREF1058_RS16400 at 680.386 kb on + strand, within HMPREF1058_RS16400 at 680.399 kb on - strand, within HMPREF1058_RS16400 at 680.414 kb on - strand, within HMPREF1058_RS16400 at 680.510 kb on + strand at 680.511 kb on - strand at 680.511 kb on - strand at 680.539 kb on - strand at 680.540 kb on + strand at 680.579 kb on + strand at 680.679 kb on - strand at 680.679 kb on - strand at 680.690 kb on + strand at 680.700 kb on + strand at 680.767 kb on + strand at 680.888 kb on + strand, within HMPREF1058_RS16395 at 680.889 kb on - strand, within HMPREF1058_RS16395
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3 remove 678,495 - HMPREF1058_RS16410 0.36 +0.4 678,552 + HMPREF1058_RS16410 0.41 -0.9 678,552 + HMPREF1058_RS16410 0.41 +0.1 678,644 + HMPREF1058_RS16410 0.48 -2.3 678,645 - HMPREF1058_RS16410 0.48 +2.1 678,650 - HMPREF1058_RS16410 0.49 +0.5 678,697 - HMPREF1058_RS16410 0.53 +1.1 678,798 - HMPREF1058_RS16410 0.61 -1.7 678,874 + HMPREF1058_RS16410 0.67 -0.4 678,874 + HMPREF1058_RS16410 0.67 -0.3 678,875 - HMPREF1058_RS16410 0.67 +0.2 678,875 - HMPREF1058_RS16410 0.67 -0.4 678,879 + HMPREF1058_RS16410 0.68 +0.8 678,880 - HMPREF1058_RS16410 0.68 +0.3 678,930 + HMPREF1058_RS16410 0.72 -0.8 679,002 - HMPREF1058_RS16410 0.78 +0.4 679,079 - HMPREF1058_RS16410 0.84 +0.5 679,079 - HMPREF1058_RS16410 0.84 +0.3 679,094 + HMPREF1058_RS16410 0.85 -0.2 679,215 + -1.1 679,216 - -0.1 679,217 + +0.1 679,217 + -0.9 679,220 - -1.9 679,309 - +0.1 679,309 - +0.5 679,337 + +0.4 679,338 - +0.4 679,356 - -0.2 679,395 + +0.4 679,407 - -1.2 679,421 + -1.1 679,422 - +0.3 679,492 - +1.3 679,535 + HMPREF1058_RS16405 0.20 +0.0 679,556 + HMPREF1058_RS16405 0.24 +1.2 679,556 + HMPREF1058_RS16405 0.24 +1.0 679,557 - HMPREF1058_RS16405 0.24 +0.6 679,567 + HMPREF1058_RS16405 0.27 +1.8 679,580 + HMPREF1058_RS16405 0.30 -0.5 679,582 + HMPREF1058_RS16405 0.30 -0.4 679,592 + HMPREF1058_RS16405 0.32 +0.1 679,638 + HMPREF1058_RS16405 0.43 -0.2 679,639 - HMPREF1058_RS16405 0.43 +0.6 679,740 - HMPREF1058_RS16405 0.66 +0.5 679,863 - -0.6 679,899 + +0.2 679,983 + +0.1 680,063 - HMPREF1058_RS16400 0.14 -1.2 680,085 + HMPREF1058_RS16400 0.18 -0.3 680,085 + HMPREF1058_RS16400 0.18 -0.1 680,086 - HMPREF1058_RS16400 0.18 -0.8 680,123 + HMPREF1058_RS16400 0.25 -2.1 680,180 - HMPREF1058_RS16400 0.35 -0.0 680,204 + HMPREF1058_RS16400 0.39 -0.6 680,351 + HMPREF1058_RS16400 0.65 -0.7 680,362 + HMPREF1058_RS16400 0.67 -0.9 680,386 + HMPREF1058_RS16400 0.71 +0.1 680,399 - HMPREF1058_RS16400 0.73 +1.0 680,414 - HMPREF1058_RS16400 0.76 -1.0 680,510 + -0.7 680,511 - -0.5 680,511 - -1.2 680,539 - +0.3 680,540 + -0.9 680,579 + -1.6 680,679 - -0.5 680,679 - -0.3 680,690 + -0.1 680,700 + -0.7 680,767 + -1.4 680,888 + HMPREF1058_RS16395 0.18 -0.2 680,889 - HMPREF1058_RS16395 0.18 +0.0
Or see this region's nucleotide sequence