Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS15570

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS15575 and HMPREF1058_RS15570 are separated by 72 nucleotidesHMPREF1058_RS15570 and HMPREF1058_RS15565 are separated by 43 nucleotides HMPREF1058_RS15575: HMPREF1058_RS15575 - DUF4421 domain-containing protein, at 883,652 to 884,779 _RS15575 HMPREF1058_RS15570: HMPREF1058_RS15570 - hypothetical protein, at 884,852 to 886,423 _RS15570 HMPREF1058_RS15565: HMPREF1058_RS15565 - hypothetical protein, at 886,467 to 887,867 _RS15565 Position (kb) 884 885 886 887Strain fitness (log2 ratio) -1 0 1 2 3at 883.858 kb on + strand, within HMPREF1058_RS15575at 883.917 kb on - strand, within HMPREF1058_RS15575at 884.132 kb on + strand, within HMPREF1058_RS15575at 884.160 kb on + strand, within HMPREF1058_RS15575at 884.349 kb on - strand, within HMPREF1058_RS15575at 884.365 kb on - strand, within HMPREF1058_RS15575at 884.365 kb on - strand, within HMPREF1058_RS15575at 884.627 kb on + strand, within HMPREF1058_RS15575at 884.642 kb on + strand, within HMPREF1058_RS15575at 884.649 kb on + strand, within HMPREF1058_RS15575at 884.650 kb on - strand, within HMPREF1058_RS15575at 884.672 kb on - strandat 884.675 kb on + strandat 884.676 kb on - strandat 884.710 kb on + strandat 884.711 kb on - strandat 884.730 kb on + strandat 884.730 kb on + strandat 884.731 kb on - strandat 884.731 kb on - strandat 884.784 kb on + strandat 884.816 kb on - strandat 884.826 kb on - strandat 884.830 kb on - strandat 884.830 kb on - strandat 884.830 kb on - strandat 884.831 kb on + strandat 884.835 kb on - strandat 884.906 kb on - strandat 884.921 kb on + strandat 884.924 kb on - strandat 884.952 kb on + strandat 884.952 kb on + strandat 884.953 kb on - strandat 884.953 kb on - strandat 884.953 kb on - strandat 884.956 kb on + strandat 884.956 kb on + strandat 884.961 kb on + strandat 884.962 kb on - strandat 884.962 kb on - strandat 884.965 kb on + strandat 884.966 kb on - strandat 884.987 kb on + strandat 884.988 kb on - strandat 885.016 kb on + strand, within HMPREF1058_RS15570at 885.017 kb on - strand, within HMPREF1058_RS15570at 885.017 kb on - strand, within HMPREF1058_RS15570at 885.023 kb on - strand, within HMPREF1058_RS15570at 885.023 kb on - strand, within HMPREF1058_RS15570at 885.028 kb on + strand, within HMPREF1058_RS15570at 885.037 kb on + strand, within HMPREF1058_RS15570at 885.041 kb on - strand, within HMPREF1058_RS15570at 885.062 kb on - strand, within HMPREF1058_RS15570at 885.063 kb on + strand, within HMPREF1058_RS15570at 885.064 kb on - strand, within HMPREF1058_RS15570at 885.065 kb on + strand, within HMPREF1058_RS15570at 885.081 kb on + strand, within HMPREF1058_RS15570at 885.082 kb on - strand, within HMPREF1058_RS15570at 885.115 kb on + strand, within HMPREF1058_RS15570at 885.115 kb on + strand, within HMPREF1058_RS15570at 885.115 kb on + strand, within HMPREF1058_RS15570at 885.193 kb on - strand, within HMPREF1058_RS15570at 885.206 kb on - strand, within HMPREF1058_RS15570at 885.284 kb on + strand, within HMPREF1058_RS15570at 885.308 kb on - strand, within HMPREF1058_RS15570at 885.308 kb on - strand, within HMPREF1058_RS15570at 885.340 kb on + strand, within HMPREF1058_RS15570at 885.341 kb on - strand, within HMPREF1058_RS15570at 885.343 kb on + strand, within HMPREF1058_RS15570at 885.343 kb on + strand, within HMPREF1058_RS15570at 885.357 kb on + strand, within HMPREF1058_RS15570at 885.358 kb on - strand, within HMPREF1058_RS15570at 885.372 kb on + strand, within HMPREF1058_RS15570at 885.411 kb on + strand, within HMPREF1058_RS15570at 885.412 kb on - strand, within HMPREF1058_RS15570at 885.429 kb on - strand, within HMPREF1058_RS15570at 885.457 kb on - strand, within HMPREF1058_RS15570at 885.474 kb on + strand, within HMPREF1058_RS15570at 885.475 kb on - strand, within HMPREF1058_RS15570at 885.526 kb on + strand, within HMPREF1058_RS15570at 885.527 kb on - strand, within HMPREF1058_RS15570at 885.533 kb on + strand, within HMPREF1058_RS15570at 885.534 kb on - strand, within HMPREF1058_RS15570at 885.560 kb on - strand, within HMPREF1058_RS15570at 885.583 kb on - strand, within HMPREF1058_RS15570at 885.595 kb on + strand, within HMPREF1058_RS15570at 885.595 kb on + strand, within HMPREF1058_RS15570at 885.595 kb on + strand, within HMPREF1058_RS15570at 885.596 kb on - strand, within HMPREF1058_RS15570at 885.642 kb on + strand, within HMPREF1058_RS15570at 885.649 kb on + strand, within HMPREF1058_RS15570at 885.660 kb on + strand, within HMPREF1058_RS15570at 885.673 kb on - strand, within HMPREF1058_RS15570at 885.673 kb on - strand, within HMPREF1058_RS15570at 885.673 kb on - strand, within HMPREF1058_RS15570at 885.673 kb on - strand, within HMPREF1058_RS15570at 885.696 kb on + strand, within HMPREF1058_RS15570at 885.697 kb on - strand, within HMPREF1058_RS15570at 885.704 kb on - strand, within HMPREF1058_RS15570at 885.704 kb on - strand, within HMPREF1058_RS15570at 885.745 kb on + strand, within HMPREF1058_RS15570at 885.773 kb on - strand, within HMPREF1058_RS15570at 885.917 kb on + strand, within HMPREF1058_RS15570at 885.918 kb on - strand, within HMPREF1058_RS15570at 885.918 kb on - strand, within HMPREF1058_RS15570at 885.918 kb on - strand, within HMPREF1058_RS15570at 886.039 kb on + strand, within HMPREF1058_RS15570at 886.079 kb on - strand, within HMPREF1058_RS15570at 886.079 kb on - strand, within HMPREF1058_RS15570at 886.093 kb on + strand, within HMPREF1058_RS15570at 886.093 kb on + strand, within HMPREF1058_RS15570at 886.100 kb on - strand, within HMPREF1058_RS15570at 886.101 kb on - strand, within HMPREF1058_RS15570at 886.189 kb on + strand, within HMPREF1058_RS15570at 886.263 kb on - strand, within HMPREF1058_RS15570at 886.263 kb on - strand, within HMPREF1058_RS15570at 886.263 kb on - strand, within HMPREF1058_RS15570at 886.263 kb on - strand, within HMPREF1058_RS15570at 886.265 kb on - strand, within HMPREF1058_RS15570at 886.265 kb on - strand, within HMPREF1058_RS15570at 886.409 kb on + strandat 886.410 kb on - strandat 886.410 kb on - strandat 886.456 kb on + strandat 886.457 kb on - strandat 886.468 kb on + strandat 886.630 kb on + strand, within HMPREF1058_RS15565at 886.759 kb on + strand, within HMPREF1058_RS15565at 886.760 kb on - strand, within HMPREF1058_RS15565at 886.792 kb on + strand, within HMPREF1058_RS15565at 886.952 kb on + strand, within HMPREF1058_RS15565at 886.952 kb on + strand, within HMPREF1058_RS15565at 886.953 kb on - strand, within HMPREF1058_RS15565at 886.953 kb on - strand, within HMPREF1058_RS15565at 886.994 kb on - strand, within HMPREF1058_RS15565at 886.994 kb on - strand, within HMPREF1058_RS15565at 886.994 kb on - strand, within HMPREF1058_RS15565at 887.017 kb on + strand, within HMPREF1058_RS15565at 887.018 kb on - strand, within HMPREF1058_RS15565at 887.030 kb on - strand, within HMPREF1058_RS15565at 887.030 kb on - strand, within HMPREF1058_RS15565at 887.086 kb on - strand, within HMPREF1058_RS15565at 887.096 kb on + strand, within HMPREF1058_RS15565at 887.114 kb on - strand, within HMPREF1058_RS15565at 887.176 kb on + strand, within HMPREF1058_RS15565at 887.255 kb on + strand, within HMPREF1058_RS15565at 887.255 kb on + strand, within HMPREF1058_RS15565at 887.256 kb on - strand, within HMPREF1058_RS15565at 887.256 kb on - strand, within HMPREF1058_RS15565at 887.256 kb on - strand, within HMPREF1058_RS15565at 887.261 kb on - strand, within HMPREF1058_RS15565at 887.351 kb on - strand, within HMPREF1058_RS15565at 887.365 kb on + strand, within HMPREF1058_RS15565at 887.371 kb on + strand, within HMPREF1058_RS15565at 887.371 kb on + strand, within HMPREF1058_RS15565at 887.372 kb on - strand, within HMPREF1058_RS15565at 887.372 kb on - strand, within HMPREF1058_RS15565at 887.386 kb on + strand, within HMPREF1058_RS15565at 887.386 kb on + strand, within HMPREF1058_RS15565at 887.388 kb on + strand, within HMPREF1058_RS15565at 887.389 kb on - strand, within HMPREF1058_RS15565at 887.389 kb on - strand, within HMPREF1058_RS15565at 887.389 kb on - strand, within HMPREF1058_RS15565at 887.389 kb on - strand, within HMPREF1058_RS15565

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
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883,858 + HMPREF1058_RS15575 0.18 -0.0
883,917 - HMPREF1058_RS15575 0.23 -0.0
884,132 + HMPREF1058_RS15575 0.43 -0.6
884,160 + HMPREF1058_RS15575 0.45 -0.7
884,349 - HMPREF1058_RS15575 0.62 -0.4
884,365 - HMPREF1058_RS15575 0.63 -0.6
884,365 - HMPREF1058_RS15575 0.63 +0.8
884,627 + HMPREF1058_RS15575 0.86 +0.2
884,642 + HMPREF1058_RS15575 0.88 -1.4
884,649 + HMPREF1058_RS15575 0.88 +0.1
884,650 - HMPREF1058_RS15575 0.88 -1.2
884,672 - +1.2
884,675 + -1.7
884,676 - -0.6
884,710 + +0.2
884,711 - -0.3
884,730 + +0.5
884,730 + +0.5
884,731 - +1.0
884,731 - -0.4
884,784 + +0.2
884,816 - +0.6
884,826 - +0.0
884,830 - +0.8
884,830 - +0.3
884,830 - +0.6
884,831 + +0.0
884,835 - -0.1
884,906 - +0.4
884,921 + +0.7
884,924 - +0.6
884,952 + +0.4
884,952 + -0.2
884,953 - +1.0
884,953 - +0.8
884,953 - +0.3
884,956 + -0.8
884,956 + -0.1
884,961 + -0.4
884,962 - +0.9
884,962 - +0.5
884,965 + +0.3
884,966 - +0.9
884,987 + +1.0
884,988 - -0.2
885,016 + HMPREF1058_RS15570 0.10 +0.1
885,017 - HMPREF1058_RS15570 0.10 +0.8
885,017 - HMPREF1058_RS15570 0.10 +0.2
885,023 - HMPREF1058_RS15570 0.11 -0.4
885,023 - HMPREF1058_RS15570 0.11 +1.5
885,028 + HMPREF1058_RS15570 0.11 +0.7
885,037 + HMPREF1058_RS15570 0.12 +2.8
885,041 - HMPREF1058_RS15570 0.12 +0.4
885,062 - HMPREF1058_RS15570 0.13 +0.5
885,063 + HMPREF1058_RS15570 0.13 +0.2
885,064 - HMPREF1058_RS15570 0.13 +0.6
885,065 + HMPREF1058_RS15570 0.14 +0.4
885,081 + HMPREF1058_RS15570 0.15 +0.1
885,082 - HMPREF1058_RS15570 0.15 +0.7
885,115 + HMPREF1058_RS15570 0.17 +0.3
885,115 + HMPREF1058_RS15570 0.17 +1.5
885,115 + HMPREF1058_RS15570 0.17 +0.4
885,193 - HMPREF1058_RS15570 0.22 +1.0
885,206 - HMPREF1058_RS15570 0.23 +0.5
885,284 + HMPREF1058_RS15570 0.27 +0.7
885,308 - HMPREF1058_RS15570 0.29 +1.4
885,308 - HMPREF1058_RS15570 0.29 +0.3
885,340 + HMPREF1058_RS15570 0.31 -1.5
885,341 - HMPREF1058_RS15570 0.31 +1.0
885,343 + HMPREF1058_RS15570 0.31 +0.5
885,343 + HMPREF1058_RS15570 0.31 +0.0
885,357 + HMPREF1058_RS15570 0.32 +0.7
885,358 - HMPREF1058_RS15570 0.32 +0.2
885,372 + HMPREF1058_RS15570 0.33 +0.2
885,411 + HMPREF1058_RS15570 0.36 +0.4
885,412 - HMPREF1058_RS15570 0.36 +0.3
885,429 - HMPREF1058_RS15570 0.37 +0.8
885,457 - HMPREF1058_RS15570 0.38 +1.1
885,474 + HMPREF1058_RS15570 0.40 +1.1
885,475 - HMPREF1058_RS15570 0.40 +0.9
885,526 + HMPREF1058_RS15570 0.43 +1.1
885,527 - HMPREF1058_RS15570 0.43 +0.3
885,533 + HMPREF1058_RS15570 0.43 +0.5
885,534 - HMPREF1058_RS15570 0.43 +0.5
885,560 - HMPREF1058_RS15570 0.45 -0.9
885,583 - HMPREF1058_RS15570 0.47 +1.0
885,595 + HMPREF1058_RS15570 0.47 +1.1
885,595 + HMPREF1058_RS15570 0.47 +1.5
885,595 + HMPREF1058_RS15570 0.47 +0.6
885,596 - HMPREF1058_RS15570 0.47 +0.9
885,642 + HMPREF1058_RS15570 0.50 +0.8
885,649 + HMPREF1058_RS15570 0.51 +0.6
885,660 + HMPREF1058_RS15570 0.51 +0.4
885,673 - HMPREF1058_RS15570 0.52 -1.3
885,673 - HMPREF1058_RS15570 0.52 -0.1
885,673 - HMPREF1058_RS15570 0.52 +0.8
885,673 - HMPREF1058_RS15570 0.52 -0.1
885,696 + HMPREF1058_RS15570 0.54 +0.7
885,697 - HMPREF1058_RS15570 0.54 +1.1
885,704 - HMPREF1058_RS15570 0.54 -1.0
885,704 - HMPREF1058_RS15570 0.54 +0.6
885,745 + HMPREF1058_RS15570 0.57 +0.7
885,773 - HMPREF1058_RS15570 0.59 +0.6
885,917 + HMPREF1058_RS15570 0.68 +0.6
885,918 - HMPREF1058_RS15570 0.68 +0.8
885,918 - HMPREF1058_RS15570 0.68 +0.4
885,918 - HMPREF1058_RS15570 0.68 +0.0
886,039 + HMPREF1058_RS15570 0.76 +0.3
886,079 - HMPREF1058_RS15570 0.78 +0.9
886,079 - HMPREF1058_RS15570 0.78 +0.4
886,093 + HMPREF1058_RS15570 0.79 -0.5
886,093 + HMPREF1058_RS15570 0.79 +0.1
886,100 - HMPREF1058_RS15570 0.79 -1.1
886,101 - HMPREF1058_RS15570 0.79 +0.8
886,189 + HMPREF1058_RS15570 0.85 +0.7
886,263 - HMPREF1058_RS15570 0.90 +1.2
886,263 - HMPREF1058_RS15570 0.90 -0.6
886,263 - HMPREF1058_RS15570 0.90 +0.5
886,263 - HMPREF1058_RS15570 0.90 +0.5
886,265 - HMPREF1058_RS15570 0.90 +1.8
886,265 - HMPREF1058_RS15570 0.90 -1.3
886,409 + +0.8
886,410 - +0.2
886,410 - +0.8
886,456 + +0.4
886,457 - -0.2
886,468 + -0.1
886,630 + HMPREF1058_RS15565 0.12 -1.2
886,759 + HMPREF1058_RS15565 0.21 +2.3
886,760 - HMPREF1058_RS15565 0.21 +0.8
886,792 + HMPREF1058_RS15565 0.23 +2.0
886,952 + HMPREF1058_RS15565 0.35 +2.4
886,952 + HMPREF1058_RS15565 0.35 +3.0
886,953 - HMPREF1058_RS15565 0.35 +2.4
886,953 - HMPREF1058_RS15565 0.35 +2.2
886,994 - HMPREF1058_RS15565 0.38 +1.5
886,994 - HMPREF1058_RS15565 0.38 +2.6
886,994 - HMPREF1058_RS15565 0.38 +2.3
887,017 + HMPREF1058_RS15565 0.39 +0.6
887,018 - HMPREF1058_RS15565 0.39 +1.7
887,030 - HMPREF1058_RS15565 0.40 +2.1
887,030 - HMPREF1058_RS15565 0.40 +2.1
887,086 - HMPREF1058_RS15565 0.44 +2.0
887,096 + HMPREF1058_RS15565 0.45 +1.8
887,114 - HMPREF1058_RS15565 0.46 +1.8
887,176 + HMPREF1058_RS15565 0.51 +2.4
887,255 + HMPREF1058_RS15565 0.56 +2.1
887,255 + HMPREF1058_RS15565 0.56 +2.2
887,256 - HMPREF1058_RS15565 0.56 +1.5
887,256 - HMPREF1058_RS15565 0.56 +2.7
887,256 - HMPREF1058_RS15565 0.56 +2.2
887,261 - HMPREF1058_RS15565 0.57 +0.1
887,351 - HMPREF1058_RS15565 0.63 +2.0
887,365 + HMPREF1058_RS15565 0.64 +0.4
887,371 + HMPREF1058_RS15565 0.65 +0.9
887,371 + HMPREF1058_RS15565 0.65 +1.7
887,372 - HMPREF1058_RS15565 0.65 +2.3
887,372 - HMPREF1058_RS15565 0.65 +2.9
887,386 + HMPREF1058_RS15565 0.66 +1.3
887,386 + HMPREF1058_RS15565 0.66 +1.5
887,388 + HMPREF1058_RS15565 0.66 +0.8
887,389 - HMPREF1058_RS15565 0.66 +1.6
887,389 - HMPREF1058_RS15565 0.66 +3.6
887,389 - HMPREF1058_RS15565 0.66 +2.2
887,389 - HMPREF1058_RS15565 0.66 +1.7

Or see this region's nucleotide sequence