Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15545 and HMPREF1058_RS15540 are separated by 221 nucleotides HMPREF1058_RS15540 and HMPREF1058_RS15535 are separated by 45 nucleotides
HMPREF1058_RS15545: HMPREF1058_RS15545 - 50S ribosomal protein L11 methyltransferase, at 891,863 to 892,708
_RS15545
HMPREF1058_RS15540: HMPREF1058_RS15540 - YccF domain-containing protein, at 892,930 to 893,298
_RS15540
HMPREF1058_RS15535: HMPREF1058_RS15535 - glycoside hydrolase family 25 protein, at 893,344 to 894,210
_RS15535
Position (kb) 892
893
894 Strain fitness (log2 ratio) -2
-1
0
1
2 at 891.946 kb on - strand at 891.963 kb on + strand, within HMPREF1058_RS15545 at 891.989 kb on + strand, within HMPREF1058_RS15545 at 891.990 kb on - strand, within HMPREF1058_RS15545 at 891.990 kb on - strand, within HMPREF1058_RS15545 at 892.071 kb on - strand, within HMPREF1058_RS15545 at 892.581 kb on + strand, within HMPREF1058_RS15545 at 892.588 kb on - strand, within HMPREF1058_RS15545 at 892.598 kb on + strand, within HMPREF1058_RS15545 at 892.602 kb on + strand, within HMPREF1058_RS15545 at 892.602 kb on + strand, within HMPREF1058_RS15545 at 892.657 kb on - strand at 892.706 kb on + strand at 892.876 kb on - strand at 892.919 kb on + strand at 892.920 kb on - strand at 892.924 kb on + strand at 892.925 kb on - strand at 892.934 kb on - strand at 892.956 kb on + strand at 893.075 kb on - strand, within HMPREF1058_RS15540 at 893.235 kb on + strand, within HMPREF1058_RS15540 at 893.236 kb on - strand, within HMPREF1058_RS15540 at 893.309 kb on + strand at 893.363 kb on - strand at 893.442 kb on + strand, within HMPREF1058_RS15535 at 893.471 kb on + strand, within HMPREF1058_RS15535 at 893.489 kb on + strand, within HMPREF1058_RS15535 at 893.489 kb on + strand, within HMPREF1058_RS15535 at 893.490 kb on - strand, within HMPREF1058_RS15535 at 893.490 kb on - strand, within HMPREF1058_RS15535 at 893.558 kb on + strand, within HMPREF1058_RS15535 at 893.566 kb on - strand, within HMPREF1058_RS15535 at 893.589 kb on - strand, within HMPREF1058_RS15535 at 893.911 kb on + strand, within HMPREF1058_RS15535 at 893.967 kb on + strand, within HMPREF1058_RS15535 at 893.967 kb on + strand, within HMPREF1058_RS15535 at 893.968 kb on - strand, within HMPREF1058_RS15535 at 893.971 kb on + strand, within HMPREF1058_RS15535 at 893.972 kb on - strand, within HMPREF1058_RS15535 at 893.972 kb on - strand, within HMPREF1058_RS15535 at 893.985 kb on + strand, within HMPREF1058_RS15535 at 894.083 kb on + strand, within HMPREF1058_RS15535 at 894.223 kb on - strand at 894.237 kb on + strand at 894.241 kb on + strand at 894.241 kb on + strand at 894.242 kb on - strand at 894.242 kb on - strand at 894.251 kb on + strand at 894.252 kb on - strand at 894.252 kb on - strand at 894.255 kb on - strand at 894.286 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3 remove 891,946 - -0.7 891,963 + HMPREF1058_RS15545 0.12 +0.1 891,989 + HMPREF1058_RS15545 0.15 +0.7 891,990 - HMPREF1058_RS15545 0.15 +0.4 891,990 - HMPREF1058_RS15545 0.15 -0.0 892,071 - HMPREF1058_RS15545 0.25 +0.2 892,581 + HMPREF1058_RS15545 0.85 +0.1 892,588 - HMPREF1058_RS15545 0.86 -1.5 892,598 + HMPREF1058_RS15545 0.87 +0.0 892,602 + HMPREF1058_RS15545 0.87 +0.2 892,602 + HMPREF1058_RS15545 0.87 -1.7 892,657 - -2.7 892,706 + +0.6 892,876 - +0.3 892,919 + +1.7 892,920 - +0.2 892,924 + +0.8 892,925 - +0.3 892,934 - -1.1 892,956 + +0.9 893,075 - HMPREF1058_RS15540 0.39 +0.5 893,235 + HMPREF1058_RS15540 0.83 +0.6 893,236 - HMPREF1058_RS15540 0.83 +0.3 893,309 + +0.9 893,363 - -0.7 893,442 + HMPREF1058_RS15535 0.11 +0.5 893,471 + HMPREF1058_RS15535 0.15 +0.4 893,489 + HMPREF1058_RS15535 0.17 +0.7 893,489 + HMPREF1058_RS15535 0.17 -1.1 893,490 - HMPREF1058_RS15535 0.17 +0.1 893,490 - HMPREF1058_RS15535 0.17 -1.7 893,558 + HMPREF1058_RS15535 0.25 -1.1 893,566 - HMPREF1058_RS15535 0.26 -0.1 893,589 - HMPREF1058_RS15535 0.28 -0.5 893,911 + HMPREF1058_RS15535 0.65 +0.3 893,967 + HMPREF1058_RS15535 0.72 -1.7 893,967 + HMPREF1058_RS15535 0.72 -0.1 893,968 - HMPREF1058_RS15535 0.72 +0.5 893,971 + HMPREF1058_RS15535 0.72 -0.2 893,972 - HMPREF1058_RS15535 0.72 -1.8 893,972 - HMPREF1058_RS15535 0.72 -2.2 893,985 + HMPREF1058_RS15535 0.74 +0.8 894,083 + HMPREF1058_RS15535 0.85 +0.1 894,223 - -0.5 894,237 + +1.8 894,241 + +0.3 894,241 + -0.5 894,242 - +0.9 894,242 - +1.0 894,251 + -0.5 894,252 - -0.4 894,252 - +0.0 894,255 - -1.7 894,286 - +0.4
Or see this region's nucleotide sequence