Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15090 and HMPREF1058_RS15085 are separated by 29 nucleotides HMPREF1058_RS15085 and HMPREF1058_RS15080 are separated by 33 nucleotides
HMPREF1058_RS15090: HMPREF1058_RS15090 - RagB/SusD family nutrient uptake outer membrane protein, at 1,017,104 to 1,018,738
_RS15090
HMPREF1058_RS15085: HMPREF1058_RS15085 - TonB-dependent receptor, at 1,018,768 to 1,021,869
_RS15085
HMPREF1058_RS15080: HMPREF1058_RS15080 - glycoside hydrolase family 97 protein, at 1,021,903 to 1,023,831
_RS15080
Position (kb) 1018
1019
1020
1021
1022 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 1017.784 kb on + strand, within HMPREF1058_RS15090 at 1017.826 kb on - strand, within HMPREF1058_RS15090 at 1017.830 kb on - strand, within HMPREF1058_RS15090 at 1017.830 kb on - strand, within HMPREF1058_RS15090 at 1017.830 kb on - strand, within HMPREF1058_RS15090 at 1017.833 kb on + strand, within HMPREF1058_RS15090 at 1017.856 kb on + strand, within HMPREF1058_RS15090 at 1017.891 kb on + strand, within HMPREF1058_RS15090 at 1017.891 kb on + strand, within HMPREF1058_RS15090 at 1017.901 kb on - strand, within HMPREF1058_RS15090 at 1017.976 kb on + strand, within HMPREF1058_RS15090 at 1017.978 kb on + strand, within HMPREF1058_RS15090 at 1018.096 kb on + strand, within HMPREF1058_RS15090 at 1018.096 kb on + strand, within HMPREF1058_RS15090 at 1018.097 kb on - strand, within HMPREF1058_RS15090 at 1018.221 kb on + strand, within HMPREF1058_RS15090 at 1018.222 kb on - strand, within HMPREF1058_RS15090 at 1018.229 kb on - strand, within HMPREF1058_RS15090 at 1018.234 kb on + strand, within HMPREF1058_RS15090 at 1018.314 kb on + strand, within HMPREF1058_RS15090 at 1018.314 kb on + strand, within HMPREF1058_RS15090 at 1018.315 kb on - strand, within HMPREF1058_RS15090 at 1018.315 kb on - strand, within HMPREF1058_RS15090 at 1018.321 kb on - strand, within HMPREF1058_RS15090 at 1018.396 kb on + strand, within HMPREF1058_RS15090 at 1018.397 kb on - strand, within HMPREF1058_RS15090 at 1018.407 kb on - strand, within HMPREF1058_RS15090 at 1018.489 kb on + strand, within HMPREF1058_RS15090 at 1018.555 kb on + strand, within HMPREF1058_RS15090 at 1018.555 kb on + strand, within HMPREF1058_RS15090 at 1018.556 kb on - strand, within HMPREF1058_RS15090 at 1018.600 kb on - strand at 1018.600 kb on - strand at 1018.606 kb on - strand at 1018.642 kb on + strand at 1018.644 kb on + strand at 1018.661 kb on + strand at 1018.671 kb on - strand at 1018.671 kb on - strand at 1018.687 kb on + strand at 1018.688 kb on - strand at 1018.715 kb on - strand at 1018.743 kb on - strand at 1018.764 kb on + strand at 1018.776 kb on + strand at 1018.782 kb on + strand at 1018.795 kb on - strand at 1018.795 kb on - strand at 1018.796 kb on + strand at 1018.796 kb on + strand at 1018.797 kb on - strand at 1018.994 kb on + strand at 1018.994 kb on + strand at 1018.994 kb on + strand at 1018.994 kb on + strand at 1019.038 kb on - strand at 1019.119 kb on - strand, within HMPREF1058_RS15085 at 1019.219 kb on - strand, within HMPREF1058_RS15085 at 1019.247 kb on + strand, within HMPREF1058_RS15085 at 1019.247 kb on + strand, within HMPREF1058_RS15085 at 1019.269 kb on - strand, within HMPREF1058_RS15085 at 1019.298 kb on - strand, within HMPREF1058_RS15085 at 1019.367 kb on + strand, within HMPREF1058_RS15085 at 1019.381 kb on + strand, within HMPREF1058_RS15085 at 1019.433 kb on + strand, within HMPREF1058_RS15085 at 1019.434 kb on - strand, within HMPREF1058_RS15085 at 1019.470 kb on - strand, within HMPREF1058_RS15085 at 1019.654 kb on + strand, within HMPREF1058_RS15085 at 1019.712 kb on + strand, within HMPREF1058_RS15085 at 1019.772 kb on + strand, within HMPREF1058_RS15085 at 1019.776 kb on + strand, within HMPREF1058_RS15085 at 1019.817 kb on + strand, within HMPREF1058_RS15085 at 1019.817 kb on + strand, within HMPREF1058_RS15085 at 1019.818 kb on - strand, within HMPREF1058_RS15085 at 1019.818 kb on - strand, within HMPREF1058_RS15085 at 1019.819 kb on + strand, within HMPREF1058_RS15085 at 1019.819 kb on + strand, within HMPREF1058_RS15085 at 1019.819 kb on + strand, within HMPREF1058_RS15085 at 1019.820 kb on - strand, within HMPREF1058_RS15085 at 1019.820 kb on - strand, within HMPREF1058_RS15085 at 1019.823 kb on + strand, within HMPREF1058_RS15085 at 1019.830 kb on - strand, within HMPREF1058_RS15085 at 1019.983 kb on - strand, within HMPREF1058_RS15085 at 1020.030 kb on + strand, within HMPREF1058_RS15085 at 1020.031 kb on - strand, within HMPREF1058_RS15085 at 1020.032 kb on + strand, within HMPREF1058_RS15085 at 1020.032 kb on + strand, within HMPREF1058_RS15085 at 1020.051 kb on - strand, within HMPREF1058_RS15085 at 1020.068 kb on + strand, within HMPREF1058_RS15085 at 1020.159 kb on - strand, within HMPREF1058_RS15085 at 1020.159 kb on - strand, within HMPREF1058_RS15085 at 1020.159 kb on - strand, within HMPREF1058_RS15085 at 1020.162 kb on - strand, within HMPREF1058_RS15085 at 1020.194 kb on + strand, within HMPREF1058_RS15085 at 1020.227 kb on - strand, within HMPREF1058_RS15085 at 1020.246 kb on + strand, within HMPREF1058_RS15085 at 1020.331 kb on - strand, within HMPREF1058_RS15085 at 1020.351 kb on - strand, within HMPREF1058_RS15085 at 1020.377 kb on + strand, within HMPREF1058_RS15085 at 1020.389 kb on - strand, within HMPREF1058_RS15085 at 1020.559 kb on + strand, within HMPREF1058_RS15085 at 1020.560 kb on - strand, within HMPREF1058_RS15085 at 1020.614 kb on + strand, within HMPREF1058_RS15085 at 1020.614 kb on + strand, within HMPREF1058_RS15085 at 1020.615 kb on - strand, within HMPREF1058_RS15085 at 1020.615 kb on - strand at 1020.675 kb on + strand, within HMPREF1058_RS15085 at 1020.747 kb on + strand, within HMPREF1058_RS15085 at 1020.813 kb on - strand, within HMPREF1058_RS15085 at 1020.862 kb on + strand, within HMPREF1058_RS15085 at 1020.945 kb on + strand, within HMPREF1058_RS15085 at 1020.946 kb on - strand, within HMPREF1058_RS15085 at 1020.967 kb on + strand, within HMPREF1058_RS15085 at 1021.056 kb on + strand at 1021.056 kb on + strand, within HMPREF1058_RS15085 at 1021.096 kb on - strand, within HMPREF1058_RS15085 at 1021.167 kb on - strand, within HMPREF1058_RS15085 at 1021.208 kb on - strand, within HMPREF1058_RS15085 at 1021.384 kb on - strand, within HMPREF1058_RS15085 at 1021.489 kb on + strand, within HMPREF1058_RS15085 at 1021.509 kb on + strand, within HMPREF1058_RS15085 at 1021.612 kb on + strand at 1021.613 kb on - strand at 1021.618 kb on - strand at 1021.623 kb on + strand at 1021.711 kb on + strand at 1021.812 kb on + strand at 1021.812 kb on + strand at 1021.833 kb on + strand at 1021.833 kb on + strand at 1022.114 kb on + strand, within HMPREF1058_RS15080 at 1022.121 kb on + strand, within HMPREF1058_RS15080 at 1022.146 kb on + strand, within HMPREF1058_RS15080 at 1022.146 kb on + strand, within HMPREF1058_RS15080 at 1022.146 kb on + strand, within HMPREF1058_RS15080 at 1022.146 kb on + strand, within HMPREF1058_RS15080 at 1022.147 kb on - strand, within HMPREF1058_RS15080 at 1022.147 kb on - strand, within HMPREF1058_RS15080 at 1022.159 kb on - strand, within HMPREF1058_RS15080 at 1022.282 kb on + strand, within HMPREF1058_RS15080 at 1022.282 kb on + strand, within HMPREF1058_RS15080 at 1022.291 kb on + strand, within HMPREF1058_RS15080 at 1022.291 kb on + strand, within HMPREF1058_RS15080 at 1022.291 kb on + strand, within HMPREF1058_RS15080 at 1022.291 kb on + strand, within HMPREF1058_RS15080 at 1022.291 kb on + strand, within HMPREF1058_RS15080 at 1022.291 kb on + strand, within HMPREF1058_RS15080 at 1022.291 kb on + strand, within HMPREF1058_RS15080 at 1022.316 kb on + strand, within HMPREF1058_RS15080 at 1022.317 kb on - strand, within HMPREF1058_RS15080 at 1022.317 kb on - strand, within HMPREF1058_RS15080 at 1022.320 kb on + strand, within HMPREF1058_RS15080 at 1022.377 kb on - strand, within HMPREF1058_RS15080 at 1022.390 kb on + strand, within HMPREF1058_RS15080 at 1022.390 kb on + strand, within HMPREF1058_RS15080 at 1022.391 kb on - strand, within HMPREF1058_RS15080 at 1022.540 kb on + strand, within HMPREF1058_RS15080 at 1022.597 kb on + strand, within HMPREF1058_RS15080 at 1022.650 kb on - strand, within HMPREF1058_RS15080 at 1022.845 kb on + strand, within HMPREF1058_RS15080
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3 remove 1,017,784 + HMPREF1058_RS15090 0.42 -0.3 1,017,826 - HMPREF1058_RS15090 0.44 +3.1 1,017,830 - HMPREF1058_RS15090 0.44 +4.6 1,017,830 - HMPREF1058_RS15090 0.44 +3.2 1,017,830 - HMPREF1058_RS15090 0.44 +4.7 1,017,833 + HMPREF1058_RS15090 0.45 -0.5 1,017,856 + HMPREF1058_RS15090 0.46 +0.3 1,017,891 + HMPREF1058_RS15090 0.48 -0.3 1,017,891 + HMPREF1058_RS15090 0.48 -0.5 1,017,901 - HMPREF1058_RS15090 0.49 +4.3 1,017,976 + HMPREF1058_RS15090 0.53 -0.7 1,017,978 + HMPREF1058_RS15090 0.53 +0.8 1,018,096 + HMPREF1058_RS15090 0.61 -1.3 1,018,096 + HMPREF1058_RS15090 0.61 -0.4 1,018,097 - HMPREF1058_RS15090 0.61 +3.8 1,018,221 + HMPREF1058_RS15090 0.68 -1.7 1,018,222 - HMPREF1058_RS15090 0.68 +3.9 1,018,229 - HMPREF1058_RS15090 0.69 +3.1 1,018,234 + HMPREF1058_RS15090 0.69 -0.2 1,018,314 + HMPREF1058_RS15090 0.74 +0.3 1,018,314 + HMPREF1058_RS15090 0.74 +0.8 1,018,315 - HMPREF1058_RS15090 0.74 +3.5 1,018,315 - HMPREF1058_RS15090 0.74 +3.9 1,018,321 - HMPREF1058_RS15090 0.74 +2.8 1,018,396 + HMPREF1058_RS15090 0.79 -0.6 1,018,397 - HMPREF1058_RS15090 0.79 +2.4 1,018,407 - HMPREF1058_RS15090 0.80 +3.8 1,018,489 + HMPREF1058_RS15090 0.85 +0.3 1,018,555 + HMPREF1058_RS15090 0.89 -1.0 1,018,555 + HMPREF1058_RS15090 0.89 +0.8 1,018,556 - HMPREF1058_RS15090 0.89 +3.5 1,018,600 - +2.6 1,018,600 - +3.2 1,018,606 - +3.8 1,018,642 + -0.2 1,018,644 + +0.3 1,018,661 + +0.6 1,018,671 - +4.4 1,018,671 - +4.1 1,018,687 + +0.5 1,018,688 - +2.7 1,018,715 - +4.2 1,018,743 - +4.5 1,018,764 + +1.1 1,018,776 + +1.7 1,018,782 + -0.2 1,018,795 - +6.0 1,018,795 - +4.1 1,018,796 + -0.2 1,018,796 + -0.6 1,018,797 - +5.3 1,018,994 + -0.7 1,018,994 + -1.9 1,018,994 + +0.0 1,018,994 + -0.1 1,019,038 - +4.4 1,019,119 - HMPREF1058_RS15085 0.11 +4.2 1,019,219 - HMPREF1058_RS15085 0.15 +3.8 1,019,247 + HMPREF1058_RS15085 0.15 -0.2 1,019,247 + HMPREF1058_RS15085 0.15 -0.0 1,019,269 - HMPREF1058_RS15085 0.16 +2.0 1,019,298 - HMPREF1058_RS15085 0.17 +3.3 1,019,367 + HMPREF1058_RS15085 0.19 +0.1 1,019,381 + HMPREF1058_RS15085 0.20 -0.2 1,019,433 + HMPREF1058_RS15085 0.21 +0.2 1,019,434 - HMPREF1058_RS15085 0.21 +3.3 1,019,470 - HMPREF1058_RS15085 0.23 +0.6 1,019,654 + HMPREF1058_RS15085 0.29 +0.2 1,019,712 + HMPREF1058_RS15085 0.30 +0.1 1,019,772 + HMPREF1058_RS15085 0.32 +0.6 1,019,776 + HMPREF1058_RS15085 0.32 -1.6 1,019,817 + HMPREF1058_RS15085 0.34 -1.3 1,019,817 + HMPREF1058_RS15085 0.34 -0.3 1,019,818 - HMPREF1058_RS15085 0.34 -0.1 1,019,818 - HMPREF1058_RS15085 0.34 +1.6 1,019,819 + HMPREF1058_RS15085 0.34 -0.9 1,019,819 + HMPREF1058_RS15085 0.34 -0.1 1,019,819 + HMPREF1058_RS15085 0.34 -0.6 1,019,820 - HMPREF1058_RS15085 0.34 +1.7 1,019,820 - HMPREF1058_RS15085 0.34 +2.4 1,019,823 + HMPREF1058_RS15085 0.34 -0.6 1,019,830 - HMPREF1058_RS15085 0.34 +3.4 1,019,983 - HMPREF1058_RS15085 0.39 +2.7 1,020,030 + HMPREF1058_RS15085 0.41 -0.2 1,020,031 - HMPREF1058_RS15085 0.41 +2.6 1,020,032 + HMPREF1058_RS15085 0.41 -1.9 1,020,032 + HMPREF1058_RS15085 0.41 -0.5 1,020,051 - HMPREF1058_RS15085 0.41 +2.3 1,020,068 + HMPREF1058_RS15085 0.42 +0.9 1,020,159 - HMPREF1058_RS15085 0.45 +1.9 1,020,159 - HMPREF1058_RS15085 0.45 +2.2 1,020,159 - HMPREF1058_RS15085 0.45 +2.3 1,020,162 - HMPREF1058_RS15085 0.45 +1.9 1,020,194 + HMPREF1058_RS15085 0.46 +0.4 1,020,227 - HMPREF1058_RS15085 0.47 +0.1 1,020,246 + HMPREF1058_RS15085 0.48 +0.6 1,020,331 - HMPREF1058_RS15085 0.50 +0.9 1,020,351 - HMPREF1058_RS15085 0.51 +4.0 1,020,377 + HMPREF1058_RS15085 0.52 -1.4 1,020,389 - HMPREF1058_RS15085 0.52 +0.1 1,020,559 + HMPREF1058_RS15085 0.58 -0.4 1,020,560 - HMPREF1058_RS15085 0.58 +1.2 1,020,614 + HMPREF1058_RS15085 0.60 -1.2 1,020,614 + HMPREF1058_RS15085 0.60 -0.3 1,020,615 - HMPREF1058_RS15085 0.60 +0.4 1,020,615 - +2.2 1,020,675 + HMPREF1058_RS15085 0.61 -0.2 1,020,747 + HMPREF1058_RS15085 0.64 +0.1 1,020,813 - HMPREF1058_RS15085 0.66 +1.1 1,020,862 + HMPREF1058_RS15085 0.68 -1.2 1,020,945 + HMPREF1058_RS15085 0.70 -1.1 1,020,946 - HMPREF1058_RS15085 0.70 +1.9 1,020,967 + HMPREF1058_RS15085 0.71 -0.2 1,021,056 + -1.5 1,021,056 + HMPREF1058_RS15085 0.74 -0.4 1,021,096 - HMPREF1058_RS15085 0.75 +2.1 1,021,167 - HMPREF1058_RS15085 0.77 +1.1 1,021,208 - HMPREF1058_RS15085 0.79 +1.5 1,021,384 - HMPREF1058_RS15085 0.84 +0.9 1,021,489 + HMPREF1058_RS15085 0.88 +0.1 1,021,509 + HMPREF1058_RS15085 0.88 -0.2 1,021,612 + -0.3 1,021,613 - +0.1 1,021,618 - +0.7 1,021,623 + -0.1 1,021,711 + +0.1 1,021,812 + +0.6 1,021,812 + +0.3 1,021,833 + -1.9 1,021,833 + +0.1 1,022,114 + HMPREF1058_RS15080 0.11 +0.2 1,022,121 + HMPREF1058_RS15080 0.11 -0.7 1,022,146 + HMPREF1058_RS15080 0.13 -0.1 1,022,146 + HMPREF1058_RS15080 0.13 +1.0 1,022,146 + HMPREF1058_RS15080 0.13 +1.1 1,022,146 + HMPREF1058_RS15080 0.13 -0.4 1,022,147 - HMPREF1058_RS15080 0.13 +4.8 1,022,147 - HMPREF1058_RS15080 0.13 +3.4 1,022,159 - HMPREF1058_RS15080 0.13 +4.9 1,022,282 + HMPREF1058_RS15080 0.20 +0.9 1,022,282 + HMPREF1058_RS15080 0.20 +1.3 1,022,291 + HMPREF1058_RS15080 0.20 -0.5 1,022,291 + HMPREF1058_RS15080 0.20 -0.2 1,022,291 + HMPREF1058_RS15080 0.20 -0.1 1,022,291 + HMPREF1058_RS15080 0.20 +0.4 1,022,291 + HMPREF1058_RS15080 0.20 -0.4 1,022,291 + HMPREF1058_RS15080 0.20 +0.2 1,022,291 + HMPREF1058_RS15080 0.20 +0.3 1,022,316 + HMPREF1058_RS15080 0.21 -1.5 1,022,317 - HMPREF1058_RS15080 0.21 +4.8 1,022,317 - HMPREF1058_RS15080 0.21 +4.8 1,022,320 + HMPREF1058_RS15080 0.22 -0.4 1,022,377 - HMPREF1058_RS15080 0.25 +2.4 1,022,390 + HMPREF1058_RS15080 0.25 -0.7 1,022,390 + HMPREF1058_RS15080 0.25 -0.5 1,022,391 - HMPREF1058_RS15080 0.25 +4.8 1,022,540 + HMPREF1058_RS15080 0.33 +0.3 1,022,597 + HMPREF1058_RS15080 0.36 -2.3 1,022,650 - HMPREF1058_RS15080 0.39 +3.1 1,022,845 + HMPREF1058_RS15080 0.49 -2.9
Or see this region's nucleotide sequence