Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11295 and HMPREF1058_RS11290 are separated by 137 nucleotides HMPREF1058_RS11290 and HMPREF1058_RS11285 are separated by 9 nucleotides HMPREF1058_RS11285 and HMPREF1058_RS11280 overlap by 1 nucleotides
HMPREF1058_RS11295: HMPREF1058_RS11295 - methyltransferase domain-containing protein, at 407,362 to 408,258
_RS11295
HMPREF1058_RS11290: HMPREF1058_RS11290 - PspC domain-containing protein, at 408,396 to 408,632
_RS11290
HMPREF1058_RS11285: HMPREF1058_RS11285 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 408,642 to 409,043
_RS11285
HMPREF1058_RS11280: HMPREF1058_RS11280 - tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB, at 409,043 to 410,413
_RS11280
Position (kb) 408
409
410 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 407.652 kb on - strand, within HMPREF1058_RS11295 at 407.935 kb on + strand, within HMPREF1058_RS11295 at 407.935 kb on + strand at 407.936 kb on - strand, within HMPREF1058_RS11295 at 407.978 kb on - strand, within HMPREF1058_RS11295 at 408.003 kb on + strand, within HMPREF1058_RS11295 at 408.004 kb on - strand, within HMPREF1058_RS11295 at 408.004 kb on - strand, within HMPREF1058_RS11295 at 408.006 kb on - strand, within HMPREF1058_RS11295 at 408.006 kb on - strand, within HMPREF1058_RS11295 at 408.026 kb on - strand, within HMPREF1058_RS11295 at 408.067 kb on - strand, within HMPREF1058_RS11295 at 408.069 kb on - strand at 408.084 kb on - strand, within HMPREF1058_RS11295 at 408.180 kb on - strand at 408.238 kb on - strand at 408.251 kb on - strand at 408.327 kb on - strand at 408.362 kb on + strand at 408.497 kb on + strand, within HMPREF1058_RS11290 at 408.498 kb on - strand, within HMPREF1058_RS11290 at 408.548 kb on + strand, within HMPREF1058_RS11290 at 408.550 kb on + strand, within HMPREF1058_RS11290 at 408.550 kb on + strand, within HMPREF1058_RS11290 at 408.551 kb on - strand, within HMPREF1058_RS11290 at 408.551 kb on - strand, within HMPREF1058_RS11290 at 408.567 kb on - strand, within HMPREF1058_RS11290 at 408.643 kb on + strand at 408.681 kb on - strand at 408.728 kb on + strand, within HMPREF1058_RS11285 at 408.728 kb on + strand, within HMPREF1058_RS11285 at 408.728 kb on + strand, within HMPREF1058_RS11285 at 408.729 kb on - strand, within HMPREF1058_RS11285 at 408.729 kb on - strand, within HMPREF1058_RS11285 at 408.729 kb on - strand, within HMPREF1058_RS11285 at 408.729 kb on - strand, within HMPREF1058_RS11285 at 408.729 kb on - strand, within HMPREF1058_RS11285 at 408.729 kb on - strand, within HMPREF1058_RS11285 at 408.729 kb on - strand, within HMPREF1058_RS11285 at 408.731 kb on - strand, within HMPREF1058_RS11285 at 408.739 kb on + strand, within HMPREF1058_RS11285 at 408.740 kb on - strand, within HMPREF1058_RS11285 at 408.753 kb on - strand, within HMPREF1058_RS11285 at 408.760 kb on - strand, within HMPREF1058_RS11285 at 408.767 kb on + strand, within HMPREF1058_RS11285 at 408.796 kb on + strand, within HMPREF1058_RS11285 at 408.796 kb on - strand, within HMPREF1058_RS11285 at 408.846 kb on - strand, within HMPREF1058_RS11285 at 408.896 kb on + strand, within HMPREF1058_RS11285 at 408.896 kb on + strand, within HMPREF1058_RS11285 at 408.897 kb on - strand, within HMPREF1058_RS11285 at 408.908 kb on + strand, within HMPREF1058_RS11285 at 408.940 kb on - strand, within HMPREF1058_RS11285 at 408.944 kb on + strand, within HMPREF1058_RS11285 at 408.957 kb on - strand, within HMPREF1058_RS11285 at 408.957 kb on - strand, within HMPREF1058_RS11285 at 408.986 kb on + strand, within HMPREF1058_RS11285 at 409.004 kb on - strand at 409.023 kb on - strand at 409.025 kb on - strand at 409.094 kb on + strand at 409.095 kb on - strand at 409.095 kb on - strand at 409.338 kb on + strand, within HMPREF1058_RS11280 at 409.338 kb on + strand, within HMPREF1058_RS11280 at 409.359 kb on + strand, within HMPREF1058_RS11280 at 409.363 kb on + strand, within HMPREF1058_RS11280 at 409.364 kb on - strand, within HMPREF1058_RS11280 at 409.369 kb on + strand, within HMPREF1058_RS11280 at 409.531 kb on - strand, within HMPREF1058_RS11280 at 409.531 kb on - strand, within HMPREF1058_RS11280 at 409.588 kb on + strand, within HMPREF1058_RS11280 at 409.588 kb on + strand, within HMPREF1058_RS11280 at 409.589 kb on - strand, within HMPREF1058_RS11280 at 409.724 kb on - strand, within HMPREF1058_RS11280 at 409.782 kb on - strand, within HMPREF1058_RS11280 at 409.789 kb on + strand, within HMPREF1058_RS11280 at 409.790 kb on - strand, within HMPREF1058_RS11280 at 409.790 kb on - strand, within HMPREF1058_RS11280 at 409.828 kb on + strand, within HMPREF1058_RS11280 at 409.867 kb on - strand, within HMPREF1058_RS11280 at 409.959 kb on - strand, within HMPREF1058_RS11280 at 409.996 kb on + strand, within HMPREF1058_RS11280 at 409.996 kb on + strand, within HMPREF1058_RS11280
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3 remove 407,652 - HMPREF1058_RS11295 0.32 +0.4 407,935 + HMPREF1058_RS11295 0.64 -1.7 407,935 + -1.2 407,936 - HMPREF1058_RS11295 0.64 -0.6 407,978 - HMPREF1058_RS11295 0.69 -0.2 408,003 + HMPREF1058_RS11295 0.71 -1.7 408,004 - HMPREF1058_RS11295 0.72 -1.1 408,004 - HMPREF1058_RS11295 0.72 +0.2 408,006 - HMPREF1058_RS11295 0.72 +0.1 408,006 - HMPREF1058_RS11295 0.72 -0.4 408,026 - HMPREF1058_RS11295 0.74 -0.0 408,067 - HMPREF1058_RS11295 0.79 +0.1 408,069 - -0.9 408,084 - HMPREF1058_RS11295 0.80 -0.9 408,180 - +0.4 408,238 - -1.5 408,251 - -0.1 408,327 - -0.3 408,362 + +0.4 408,497 + HMPREF1058_RS11290 0.43 -0.1 408,498 - HMPREF1058_RS11290 0.43 +0.1 408,548 + HMPREF1058_RS11290 0.64 -1.2 408,550 + HMPREF1058_RS11290 0.65 +0.1 408,550 + HMPREF1058_RS11290 0.65 +1.1 408,551 - HMPREF1058_RS11290 0.65 -0.4 408,551 - HMPREF1058_RS11290 0.65 -0.8 408,567 - HMPREF1058_RS11290 0.72 +0.0 408,643 + -2.5 408,681 - +0.3 408,728 + HMPREF1058_RS11285 0.21 +1.6 408,728 + HMPREF1058_RS11285 0.21 +0.5 408,728 + HMPREF1058_RS11285 0.21 +0.2 408,729 - HMPREF1058_RS11285 0.22 +0.6 408,729 - HMPREF1058_RS11285 0.22 -0.6 408,729 - HMPREF1058_RS11285 0.22 -0.9 408,729 - HMPREF1058_RS11285 0.22 +0.2 408,729 - HMPREF1058_RS11285 0.22 +0.4 408,729 - HMPREF1058_RS11285 0.22 +0.9 408,729 - HMPREF1058_RS11285 0.22 -0.0 408,731 - HMPREF1058_RS11285 0.22 +0.7 408,739 + HMPREF1058_RS11285 0.24 +0.9 408,740 - HMPREF1058_RS11285 0.24 +0.1 408,753 - HMPREF1058_RS11285 0.28 -2.2 408,760 - HMPREF1058_RS11285 0.29 -0.0 408,767 + HMPREF1058_RS11285 0.31 +0.6 408,796 + HMPREF1058_RS11285 0.38 +0.6 408,796 - HMPREF1058_RS11285 0.38 -0.1 408,846 - HMPREF1058_RS11285 0.51 +0.6 408,896 + HMPREF1058_RS11285 0.63 +2.1 408,896 + HMPREF1058_RS11285 0.63 +0.1 408,897 - HMPREF1058_RS11285 0.63 +1.1 408,908 + HMPREF1058_RS11285 0.66 +0.5 408,940 - HMPREF1058_RS11285 0.74 +1.0 408,944 + HMPREF1058_RS11285 0.75 -0.6 408,957 - HMPREF1058_RS11285 0.78 -0.2 408,957 - HMPREF1058_RS11285 0.78 -0.2 408,986 + HMPREF1058_RS11285 0.86 +0.7 409,004 - +0.3 409,023 - -0.4 409,025 - +0.1 409,094 + -2.1 409,095 - -0.2 409,095 - +0.4 409,338 + HMPREF1058_RS11280 0.22 +0.8 409,338 + HMPREF1058_RS11280 0.22 -1.3 409,359 + HMPREF1058_RS11280 0.23 -1.2 409,363 + HMPREF1058_RS11280 0.23 +0.0 409,364 - HMPREF1058_RS11280 0.23 -1.0 409,369 + HMPREF1058_RS11280 0.24 -1.5 409,531 - HMPREF1058_RS11280 0.36 -0.3 409,531 - HMPREF1058_RS11280 0.36 +0.3 409,588 + HMPREF1058_RS11280 0.40 -0.6 409,588 + HMPREF1058_RS11280 0.40 +0.9 409,589 - HMPREF1058_RS11280 0.40 +0.5 409,724 - HMPREF1058_RS11280 0.50 +0.2 409,782 - HMPREF1058_RS11280 0.54 +3.0 409,789 + HMPREF1058_RS11280 0.54 -0.4 409,790 - HMPREF1058_RS11280 0.54 -0.5 409,790 - HMPREF1058_RS11280 0.54 +2.7 409,828 + HMPREF1058_RS11280 0.57 -1.2 409,867 - HMPREF1058_RS11280 0.60 -0.6 409,959 - HMPREF1058_RS11280 0.67 +0.0 409,996 + HMPREF1058_RS11280 0.70 -1.2 409,996 + HMPREF1058_RS11280 0.70 -1.5
Or see this region's nucleotide sequence