Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11020 and HMPREF1058_RS11015 are separated by 57 nucleotides HMPREF1058_RS11015 and HMPREF1058_RS11010 are separated by 352 nucleotides
HMPREF1058_RS11020: HMPREF1058_RS11020 - helix-turn-helix domain-containing protein, at 500,118 to 500,615
_RS11020
HMPREF1058_RS11015: HMPREF1058_RS11015 - hypothetical protein, at 500,673 to 503,672
_RS11015
HMPREF1058_RS11010: HMPREF1058_RS11010 - tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD, at 504,025 to 504,708
_RS11010
Position (kb) 500
501
502
503
504 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 499.738 kb on + strand at 500.255 kb on + strand, within HMPREF1058_RS11020 at 500.255 kb on + strand, within HMPREF1058_RS11020 at 500.255 kb on + strand, within HMPREF1058_RS11020 at 500.256 kb on - strand, within HMPREF1058_RS11020 at 500.257 kb on + strand, within HMPREF1058_RS11020 at 500.259 kb on + strand, within HMPREF1058_RS11020 at 500.270 kb on - strand, within HMPREF1058_RS11020 at 500.275 kb on - strand, within HMPREF1058_RS11020 at 500.359 kb on - strand, within HMPREF1058_RS11020 at 500.359 kb on - strand, within HMPREF1058_RS11020 at 500.431 kb on - strand, within HMPREF1058_RS11020 at 500.620 kb on - strand at 500.620 kb on - strand at 500.621 kb on + strand at 500.621 kb on + strand at 500.622 kb on - strand at 500.626 kb on - strand at 500.626 kb on - strand at 500.626 kb on - strand at 500.689 kb on + strand at 500.840 kb on + strand at 500.841 kb on - strand at 500.845 kb on - strand at 500.849 kb on + strand at 500.885 kb on - strand at 500.903 kb on + strand at 500.904 kb on - strand at 500.910 kb on - strand at 501.113 kb on - strand, within HMPREF1058_RS11015 at 501.135 kb on + strand, within HMPREF1058_RS11015 at 501.136 kb on - strand, within HMPREF1058_RS11015 at 501.150 kb on + strand, within HMPREF1058_RS11015 at 501.151 kb on - strand, within HMPREF1058_RS11015 at 501.192 kb on + strand, within HMPREF1058_RS11015 at 501.233 kb on + strand, within HMPREF1058_RS11015 at 501.240 kb on - strand, within HMPREF1058_RS11015 at 501.294 kb on + strand, within HMPREF1058_RS11015 at 501.315 kb on + strand, within HMPREF1058_RS11015 at 501.316 kb on - strand, within HMPREF1058_RS11015 at 501.323 kb on + strand, within HMPREF1058_RS11015 at 501.323 kb on + strand, within HMPREF1058_RS11015 at 501.323 kb on + strand, within HMPREF1058_RS11015 at 501.326 kb on - strand, within HMPREF1058_RS11015 at 501.386 kb on - strand, within HMPREF1058_RS11015 at 501.387 kb on - strand, within HMPREF1058_RS11015 at 501.387 kb on - strand, within HMPREF1058_RS11015 at 501.391 kb on - strand, within HMPREF1058_RS11015 at 501.391 kb on - strand, within HMPREF1058_RS11015 at 501.640 kb on - strand, within HMPREF1058_RS11015 at 501.676 kb on - strand at 501.695 kb on + strand, within HMPREF1058_RS11015 at 501.696 kb on - strand, within HMPREF1058_RS11015 at 501.718 kb on + strand, within HMPREF1058_RS11015 at 501.721 kb on + strand, within HMPREF1058_RS11015 at 501.736 kb on + strand, within HMPREF1058_RS11015 at 501.736 kb on + strand, within HMPREF1058_RS11015 at 501.737 kb on - strand, within HMPREF1058_RS11015 at 501.737 kb on - strand, within HMPREF1058_RS11015 at 501.740 kb on + strand, within HMPREF1058_RS11015 at 501.825 kb on + strand, within HMPREF1058_RS11015 at 501.839 kb on + strand, within HMPREF1058_RS11015 at 501.859 kb on + strand, within HMPREF1058_RS11015 at 501.910 kb on + strand, within HMPREF1058_RS11015 at 501.911 kb on - strand, within HMPREF1058_RS11015 at 501.912 kb on + strand, within HMPREF1058_RS11015 at 501.948 kb on - strand, within HMPREF1058_RS11015 at 501.970 kb on - strand, within HMPREF1058_RS11015 at 502.057 kb on - strand, within HMPREF1058_RS11015 at 502.089 kb on + strand, within HMPREF1058_RS11015 at 502.296 kb on - strand, within HMPREF1058_RS11015 at 502.330 kb on + strand, within HMPREF1058_RS11015 at 502.344 kb on + strand, within HMPREF1058_RS11015 at 502.344 kb on + strand, within HMPREF1058_RS11015 at 502.344 kb on + strand, within HMPREF1058_RS11015 at 502.345 kb on - strand, within HMPREF1058_RS11015 at 502.345 kb on - strand, within HMPREF1058_RS11015 at 502.424 kb on + strand, within HMPREF1058_RS11015 at 502.426 kb on + strand, within HMPREF1058_RS11015 at 502.426 kb on + strand, within HMPREF1058_RS11015 at 502.426 kb on + strand, within HMPREF1058_RS11015 at 502.428 kb on + strand, within HMPREF1058_RS11015 at 502.428 kb on + strand, within HMPREF1058_RS11015 at 502.428 kb on + strand, within HMPREF1058_RS11015 at 502.428 kb on + strand, within HMPREF1058_RS11015 at 502.429 kb on - strand, within HMPREF1058_RS11015 at 502.540 kb on + strand, within HMPREF1058_RS11015 at 502.565 kb on - strand, within HMPREF1058_RS11015 at 502.577 kb on - strand, within HMPREF1058_RS11015 at 502.587 kb on + strand, within HMPREF1058_RS11015 at 502.611 kb on + strand, within HMPREF1058_RS11015 at 502.663 kb on + strand, within HMPREF1058_RS11015 at 502.689 kb on + strand, within HMPREF1058_RS11015 at 502.734 kb on - strand, within HMPREF1058_RS11015 at 502.772 kb on + strand, within HMPREF1058_RS11015 at 502.772 kb on + strand, within HMPREF1058_RS11015 at 502.772 kb on + strand, within HMPREF1058_RS11015 at 502.820 kb on - strand, within HMPREF1058_RS11015 at 502.820 kb on - strand, within HMPREF1058_RS11015 at 502.890 kb on + strand, within HMPREF1058_RS11015 at 502.890 kb on + strand, within HMPREF1058_RS11015 at 502.893 kb on - strand, within HMPREF1058_RS11015 at 502.896 kb on + strand, within HMPREF1058_RS11015 at 502.912 kb on - strand, within HMPREF1058_RS11015 at 502.952 kb on - strand, within HMPREF1058_RS11015 at 503.035 kb on + strand, within HMPREF1058_RS11015 at 503.036 kb on - strand, within HMPREF1058_RS11015 at 503.036 kb on - strand, within HMPREF1058_RS11015 at 503.038 kb on - strand, within HMPREF1058_RS11015 at 503.039 kb on + strand, within HMPREF1058_RS11015 at 503.093 kb on + strand, within HMPREF1058_RS11015 at 503.109 kb on - strand, within HMPREF1058_RS11015 at 503.153 kb on + strand, within HMPREF1058_RS11015 at 503.158 kb on + strand, within HMPREF1058_RS11015 at 503.159 kb on - strand, within HMPREF1058_RS11015 at 503.208 kb on - strand, within HMPREF1058_RS11015 at 503.281 kb on - strand, within HMPREF1058_RS11015 at 503.411 kb on - strand at 503.434 kb on + strand at 503.435 kb on - strand at 503.511 kb on + strand at 503.511 kb on + strand at 503.511 kb on + strand at 503.512 kb on - strand at 503.512 kb on - strand at 503.578 kb on + strand at 503.579 kb on - strand at 503.607 kb on + strand at 503.607 kb on + strand at 503.608 kb on - strand at 503.624 kb on - strand at 503.624 kb on - strand at 503.624 kb on - strand at 503.652 kb on + strand at 503.652 kb on + strand at 503.657 kb on - strand at 503.684 kb on - strand at 503.687 kb on - strand at 503.770 kb on + strand at 503.772 kb on + strand at 503.773 kb on - strand at 503.775 kb on + strand at 503.790 kb on + strand at 503.791 kb on - strand at 503.791 kb on - strand at 503.836 kb on + strand at 503.836 kb on + strand at 503.838 kb on + strand at 503.838 kb on + strand at 503.838 kb on + strand at 504.026 kb on + strand at 504.049 kb on + strand at 504.050 kb on - strand at 504.140 kb on + strand, within HMPREF1058_RS11010 at 504.141 kb on - strand, within HMPREF1058_RS11010 at 504.177 kb on - strand, within HMPREF1058_RS11010 at 504.177 kb on - strand, within HMPREF1058_RS11010 at 504.242 kb on + strand, within HMPREF1058_RS11010 at 504.254 kb on + strand, within HMPREF1058_RS11010 at 504.254 kb on + strand, within HMPREF1058_RS11010 at 504.325 kb on + strand, within HMPREF1058_RS11010 at 504.326 kb on - strand, within HMPREF1058_RS11010 at 504.326 kb on - strand, within HMPREF1058_RS11010 at 504.475 kb on - strand, within HMPREF1058_RS11010 at 504.477 kb on - strand, within HMPREF1058_RS11010 at 504.541 kb on + strand, within HMPREF1058_RS11010 at 504.668 kb on + strand at 504.668 kb on + strand at 504.669 kb on - strand at 504.669 kb on - strand at 504.669 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3 remove 499,738 + +0.4 500,255 + HMPREF1058_RS11020 0.28 -0.1 500,255 + HMPREF1058_RS11020 0.28 +0.0 500,255 + HMPREF1058_RS11020 0.28 -1.0 500,256 - HMPREF1058_RS11020 0.28 +0.3 500,257 + HMPREF1058_RS11020 0.28 -0.8 500,259 + HMPREF1058_RS11020 0.28 -0.2 500,270 - HMPREF1058_RS11020 0.31 -0.3 500,275 - HMPREF1058_RS11020 0.32 +0.3 500,359 - HMPREF1058_RS11020 0.48 +0.0 500,359 - HMPREF1058_RS11020 0.48 +0.2 500,431 - HMPREF1058_RS11020 0.63 -0.6 500,620 - -0.3 500,620 - -0.1 500,621 + +0.0 500,621 + -1.5 500,622 - +0.6 500,626 - -1.5 500,626 - -0.0 500,626 - +0.0 500,689 + +0.0 500,840 + +1.0 500,841 - -1.9 500,845 - +0.6 500,849 + +0.4 500,885 - +0.0 500,903 + +0.5 500,904 - +0.1 500,910 - +0.6 501,113 - HMPREF1058_RS11015 0.15 +0.1 501,135 + HMPREF1058_RS11015 0.15 +0.8 501,136 - HMPREF1058_RS11015 0.15 +0.9 501,150 + HMPREF1058_RS11015 0.16 +0.3 501,151 - HMPREF1058_RS11015 0.16 -0.3 501,192 + HMPREF1058_RS11015 0.17 +0.9 501,233 + HMPREF1058_RS11015 0.19 -0.3 501,240 - HMPREF1058_RS11015 0.19 -0.1 501,294 + HMPREF1058_RS11015 0.21 +1.1 501,315 + HMPREF1058_RS11015 0.21 +0.5 501,316 - HMPREF1058_RS11015 0.21 -1.6 501,323 + HMPREF1058_RS11015 0.22 +0.3 501,323 + HMPREF1058_RS11015 0.22 -1.9 501,323 + HMPREF1058_RS11015 0.22 +0.6 501,326 - HMPREF1058_RS11015 0.22 +0.1 501,386 - HMPREF1058_RS11015 0.24 +0.2 501,387 - HMPREF1058_RS11015 0.24 -0.1 501,387 - HMPREF1058_RS11015 0.24 -1.1 501,391 - HMPREF1058_RS11015 0.24 -0.7 501,391 - HMPREF1058_RS11015 0.24 +0.2 501,640 - HMPREF1058_RS11015 0.32 +0.8 501,676 - -1.7 501,695 + HMPREF1058_RS11015 0.34 +0.6 501,696 - HMPREF1058_RS11015 0.34 -0.4 501,718 + HMPREF1058_RS11015 0.35 +0.3 501,721 + HMPREF1058_RS11015 0.35 +0.9 501,736 + HMPREF1058_RS11015 0.35 -0.0 501,736 + HMPREF1058_RS11015 0.35 +0.2 501,737 - HMPREF1058_RS11015 0.35 +0.3 501,737 - HMPREF1058_RS11015 0.35 -0.1 501,740 + HMPREF1058_RS11015 0.36 -0.9 501,825 + HMPREF1058_RS11015 0.38 +0.7 501,839 + HMPREF1058_RS11015 0.39 +0.9 501,859 + HMPREF1058_RS11015 0.40 +0.7 501,910 + HMPREF1058_RS11015 0.41 +0.4 501,911 - HMPREF1058_RS11015 0.41 +0.8 501,912 + HMPREF1058_RS11015 0.41 -1.3 501,948 - HMPREF1058_RS11015 0.42 +0.9 501,970 - HMPREF1058_RS11015 0.43 -0.9 502,057 - HMPREF1058_RS11015 0.46 +0.8 502,089 + HMPREF1058_RS11015 0.47 +0.1 502,296 - HMPREF1058_RS11015 0.54 +1.8 502,330 + HMPREF1058_RS11015 0.55 +0.6 502,344 + HMPREF1058_RS11015 0.56 +0.4 502,344 + HMPREF1058_RS11015 0.56 +2.2 502,344 + HMPREF1058_RS11015 0.56 -0.5 502,345 - HMPREF1058_RS11015 0.56 +0.4 502,345 - HMPREF1058_RS11015 0.56 +0.6 502,424 + HMPREF1058_RS11015 0.58 +1.2 502,426 + HMPREF1058_RS11015 0.58 +0.4 502,426 + HMPREF1058_RS11015 0.58 +1.6 502,426 + HMPREF1058_RS11015 0.58 +0.1 502,428 + HMPREF1058_RS11015 0.58 -0.4 502,428 + HMPREF1058_RS11015 0.58 +0.8 502,428 + HMPREF1058_RS11015 0.58 +0.8 502,428 + HMPREF1058_RS11015 0.58 +0.8 502,429 - HMPREF1058_RS11015 0.59 -0.2 502,540 + HMPREF1058_RS11015 0.62 +0.7 502,565 - HMPREF1058_RS11015 0.63 +0.2 502,577 - HMPREF1058_RS11015 0.63 -0.1 502,587 + HMPREF1058_RS11015 0.64 +1.5 502,611 + HMPREF1058_RS11015 0.65 +1.1 502,663 + HMPREF1058_RS11015 0.66 +0.4 502,689 + HMPREF1058_RS11015 0.67 +0.5 502,734 - HMPREF1058_RS11015 0.69 +0.9 502,772 + HMPREF1058_RS11015 0.70 +0.3 502,772 + HMPREF1058_RS11015 0.70 +0.5 502,772 + HMPREF1058_RS11015 0.70 +1.4 502,820 - HMPREF1058_RS11015 0.72 +0.4 502,820 - HMPREF1058_RS11015 0.72 -0.0 502,890 + HMPREF1058_RS11015 0.74 +1.5 502,890 + HMPREF1058_RS11015 0.74 -1.0 502,893 - HMPREF1058_RS11015 0.74 -1.0 502,896 + HMPREF1058_RS11015 0.74 +0.2 502,912 - HMPREF1058_RS11015 0.75 +0.5 502,952 - HMPREF1058_RS11015 0.76 -0.9 503,035 + HMPREF1058_RS11015 0.79 +2.7 503,036 - HMPREF1058_RS11015 0.79 +1.2 503,036 - HMPREF1058_RS11015 0.79 -2.9 503,038 - HMPREF1058_RS11015 0.79 +0.4 503,039 + HMPREF1058_RS11015 0.79 +0.5 503,093 + HMPREF1058_RS11015 0.81 +1.6 503,109 - HMPREF1058_RS11015 0.81 +0.2 503,153 + HMPREF1058_RS11015 0.83 +1.6 503,158 + HMPREF1058_RS11015 0.83 +1.8 503,159 - HMPREF1058_RS11015 0.83 +0.3 503,208 - HMPREF1058_RS11015 0.84 +0.6 503,281 - HMPREF1058_RS11015 0.87 -0.0 503,411 - -0.8 503,434 + +2.8 503,435 - -0.9 503,511 + +0.8 503,511 + +2.4 503,511 + +2.0 503,512 - +0.6 503,512 - +1.0 503,578 + +2.1 503,579 - -0.1 503,607 + +2.5 503,607 + +2.7 503,608 - +0.1 503,624 - +0.4 503,624 - +0.2 503,624 - -0.3 503,652 + +2.6 503,652 + -1.5 503,657 - -0.7 503,684 - +0.2 503,687 - -0.6 503,770 + +2.3 503,772 + +1.1 503,773 - +0.3 503,775 + +0.3 503,790 + +0.3 503,791 - -0.6 503,791 - -0.6 503,836 + -0.1 503,836 + -0.0 503,838 + +0.1 503,838 + -0.5 503,838 + -0.4 504,026 + +0.1 504,049 + -2.8 504,050 - +0.6 504,140 + HMPREF1058_RS11010 0.17 -0.1 504,141 - HMPREF1058_RS11010 0.17 -0.3 504,177 - HMPREF1058_RS11010 0.22 +0.3 504,177 - HMPREF1058_RS11010 0.22 -1.7 504,242 + HMPREF1058_RS11010 0.32 +0.7 504,254 + HMPREF1058_RS11010 0.33 -0.1 504,254 + HMPREF1058_RS11010 0.33 -1.7 504,325 + HMPREF1058_RS11010 0.44 +0.3 504,326 - HMPREF1058_RS11010 0.44 -0.0 504,326 - HMPREF1058_RS11010 0.44 +0.2 504,475 - HMPREF1058_RS11010 0.66 -1.6 504,477 - HMPREF1058_RS11010 0.66 +1.1 504,541 + HMPREF1058_RS11010 0.75 +0.1 504,668 + +0.7 504,668 + +0.2 504,669 - +0.3 504,669 - -0.1 504,669 - +0.7
Or see this region's nucleotide sequence