Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10895 and HMPREF1058_RS10890 are separated by 183 nucleotides HMPREF1058_RS10890 and HMPREF1058_RS10885 are separated by 245 nucleotides
HMPREF1058_RS10895: HMPREF1058_RS10895 - LTA synthase family protein, at 534,973 to 537,000
_RS10895
HMPREF1058_RS10890: HMPREF1058_RS10890 - glycosyltransferase family 2 protein, at 537,184 to 538,167
_RS10890
HMPREF1058_RS10885: HMPREF1058_RS10885 - glycosyltransferase, at 538,413 to 539,729
_RS10885
Position (kb) 537
538
539 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 536.202 kb on + strand, within HMPREF1058_RS10895 at 536.230 kb on + strand, within HMPREF1058_RS10895 at 536.231 kb on - strand, within HMPREF1058_RS10895 at 536.231 kb on - strand, within HMPREF1058_RS10895 at 536.231 kb on - strand, within HMPREF1058_RS10895 at 536.285 kb on + strand, within HMPREF1058_RS10895 at 536.310 kb on + strand, within HMPREF1058_RS10895 at 536.311 kb on - strand, within HMPREF1058_RS10895 at 536.311 kb on - strand, within HMPREF1058_RS10895 at 536.311 kb on - strand, within HMPREF1058_RS10895 at 536.311 kb on - strand, within HMPREF1058_RS10895 at 536.313 kb on - strand, within HMPREF1058_RS10895 at 536.353 kb on - strand, within HMPREF1058_RS10895 at 536.374 kb on + strand, within HMPREF1058_RS10895 at 536.377 kb on - strand, within HMPREF1058_RS10895 at 536.377 kb on - strand, within HMPREF1058_RS10895 at 536.377 kb on - strand, within HMPREF1058_RS10895 at 536.380 kb on + strand, within HMPREF1058_RS10895 at 536.380 kb on + strand, within HMPREF1058_RS10895 at 536.435 kb on + strand, within HMPREF1058_RS10895 at 536.450 kb on - strand, within HMPREF1058_RS10895 at 536.453 kb on - strand, within HMPREF1058_RS10895 at 536.453 kb on - strand, within HMPREF1058_RS10895 at 536.475 kb on + strand, within HMPREF1058_RS10895 at 536.475 kb on + strand, within HMPREF1058_RS10895 at 536.475 kb on + strand, within HMPREF1058_RS10895 at 536.475 kb on + strand, within HMPREF1058_RS10895 at 536.603 kb on + strand, within HMPREF1058_RS10895 at 536.740 kb on + strand, within HMPREF1058_RS10895 at 536.741 kb on - strand, within HMPREF1058_RS10895 at 536.741 kb on - strand, within HMPREF1058_RS10895 at 536.745 kb on - strand, within HMPREF1058_RS10895 at 536.745 kb on - strand, within HMPREF1058_RS10895 at 536.752 kb on + strand, within HMPREF1058_RS10895 at 536.753 kb on - strand, within HMPREF1058_RS10895 at 536.755 kb on - strand, within HMPREF1058_RS10895 at 536.781 kb on + strand, within HMPREF1058_RS10895 at 536.891 kb on - strand at 536.892 kb on + strand at 536.892 kb on + strand at 536.892 kb on + strand at 536.896 kb on + strand at 536.896 kb on + strand at 536.897 kb on - strand at 536.906 kb on - strand at 536.909 kb on + strand at 536.910 kb on - strand at 536.955 kb on + strand at 536.956 kb on - strand at 537.181 kb on - strand at 537.186 kb on - strand at 537.295 kb on + strand, within HMPREF1058_RS10890 at 537.368 kb on + strand, within HMPREF1058_RS10890 at 537.385 kb on + strand, within HMPREF1058_RS10890 at 537.385 kb on + strand, within HMPREF1058_RS10890 at 537.385 kb on + strand, within HMPREF1058_RS10890 at 537.531 kb on - strand, within HMPREF1058_RS10890 at 537.538 kb on + strand, within HMPREF1058_RS10890 at 537.539 kb on - strand, within HMPREF1058_RS10890 at 537.563 kb on + strand, within HMPREF1058_RS10890 at 537.629 kb on - strand, within HMPREF1058_RS10890 at 537.629 kb on - strand, within HMPREF1058_RS10890 at 537.629 kb on - strand, within HMPREF1058_RS10890 at 537.671 kb on + strand, within HMPREF1058_RS10890 at 537.672 kb on - strand, within HMPREF1058_RS10890 at 537.672 kb on - strand, within HMPREF1058_RS10890 at 537.783 kb on + strand, within HMPREF1058_RS10890 at 537.827 kb on + strand, within HMPREF1058_RS10890 at 537.828 kb on - strand, within HMPREF1058_RS10890 at 537.898 kb on + strand, within HMPREF1058_RS10890 at 537.898 kb on + strand, within HMPREF1058_RS10890 at 537.898 kb on + strand, within HMPREF1058_RS10890 at 537.898 kb on + strand, within HMPREF1058_RS10890 at 537.898 kb on + strand, within HMPREF1058_RS10890 at 537.898 kb on + strand, within HMPREF1058_RS10890 at 537.898 kb on + strand, within HMPREF1058_RS10890 at 537.899 kb on - strand, within HMPREF1058_RS10890 at 537.899 kb on - strand, within HMPREF1058_RS10890 at 537.899 kb on - strand, within HMPREF1058_RS10890 at 537.899 kb on - strand, within HMPREF1058_RS10890 at 537.899 kb on - strand, within HMPREF1058_RS10890 at 537.901 kb on - strand, within HMPREF1058_RS10890 at 537.942 kb on + strand, within HMPREF1058_RS10890 at 537.942 kb on + strand, within HMPREF1058_RS10890 at 537.974 kb on - strand, within HMPREF1058_RS10890 at 537.974 kb on - strand, within HMPREF1058_RS10890 at 537.979 kb on - strand, within HMPREF1058_RS10890 at 538.073 kb on + strand at 538.089 kb on + strand at 538.089 kb on + strand at 538.090 kb on - strand at 538.120 kb on - strand at 538.121 kb on + strand at 538.121 kb on + strand at 538.127 kb on + strand at 538.132 kb on - strand at 538.141 kb on + strand at 538.179 kb on - strand at 538.206 kb on + strand at 538.208 kb on + strand at 538.215 kb on - strand at 538.217 kb on - strand at 538.217 kb on - strand at 538.300 kb on - strand at 538.300 kb on - strand at 538.337 kb on + strand at 538.340 kb on - strand at 538.344 kb on + strand at 538.345 kb on - strand at 538.348 kb on + strand at 538.361 kb on - strand at 538.364 kb on - strand at 538.364 kb on - strand at 538.500 kb on + strand at 538.500 kb on + strand at 538.512 kb on - strand at 538.512 kb on - strand at 538.568 kb on - strand, within HMPREF1058_RS10885 at 538.608 kb on - strand, within HMPREF1058_RS10885 at 538.611 kb on + strand, within HMPREF1058_RS10885 at 538.612 kb on - strand, within HMPREF1058_RS10885 at 538.612 kb on - strand, within HMPREF1058_RS10885 at 538.614 kb on - strand, within HMPREF1058_RS10885 at 538.650 kb on - strand, within HMPREF1058_RS10885 at 538.662 kb on + strand, within HMPREF1058_RS10885 at 538.663 kb on - strand, within HMPREF1058_RS10885 at 538.723 kb on + strand, within HMPREF1058_RS10885 at 538.724 kb on - strand, within HMPREF1058_RS10885 at 538.756 kb on + strand, within HMPREF1058_RS10885 at 538.760 kb on - strand, within HMPREF1058_RS10885 at 538.812 kb on + strand, within HMPREF1058_RS10885 at 538.812 kb on + strand, within HMPREF1058_RS10885 at 538.813 kb on - strand, within HMPREF1058_RS10885 at 538.822 kb on - strand, within HMPREF1058_RS10885 at 538.857 kb on - strand, within HMPREF1058_RS10885 at 538.865 kb on - strand, within HMPREF1058_RS10885 at 539.051 kb on + strand, within HMPREF1058_RS10885 at 539.061 kb on - strand, within HMPREF1058_RS10885 at 539.078 kb on - strand, within HMPREF1058_RS10885 at 539.121 kb on - strand, within HMPREF1058_RS10885
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3 remove 536,202 + HMPREF1058_RS10895 0.61 +1.7 536,230 + HMPREF1058_RS10895 0.62 +0.2 536,231 - HMPREF1058_RS10895 0.62 -0.3 536,231 - HMPREF1058_RS10895 0.62 +0.3 536,231 - HMPREF1058_RS10895 0.62 -0.3 536,285 + HMPREF1058_RS10895 0.65 -1.6 536,310 + HMPREF1058_RS10895 0.66 -0.3 536,311 - HMPREF1058_RS10895 0.66 -0.6 536,311 - HMPREF1058_RS10895 0.66 -1.3 536,311 - HMPREF1058_RS10895 0.66 -0.8 536,311 - HMPREF1058_RS10895 0.66 +0.9 536,313 - HMPREF1058_RS10895 0.66 -1.7 536,353 - HMPREF1058_RS10895 0.68 -0.3 536,374 + HMPREF1058_RS10895 0.69 -2.3 536,377 - HMPREF1058_RS10895 0.69 +0.0 536,377 - HMPREF1058_RS10895 0.69 -2.0 536,377 - HMPREF1058_RS10895 0.69 -0.2 536,380 + HMPREF1058_RS10895 0.69 -0.1 536,380 + HMPREF1058_RS10895 0.69 -1.2 536,435 + HMPREF1058_RS10895 0.72 -0.4 536,450 - HMPREF1058_RS10895 0.73 -1.1 536,453 - HMPREF1058_RS10895 0.73 -0.5 536,453 - HMPREF1058_RS10895 0.73 -0.0 536,475 + HMPREF1058_RS10895 0.74 -0.0 536,475 + HMPREF1058_RS10895 0.74 -0.8 536,475 + HMPREF1058_RS10895 0.74 -0.4 536,475 + HMPREF1058_RS10895 0.74 -0.6 536,603 + HMPREF1058_RS10895 0.80 -0.1 536,740 + HMPREF1058_RS10895 0.87 -0.0 536,741 - HMPREF1058_RS10895 0.87 +0.7 536,741 - HMPREF1058_RS10895 0.87 -0.0 536,745 - HMPREF1058_RS10895 0.87 +0.3 536,745 - HMPREF1058_RS10895 0.87 -0.5 536,752 + HMPREF1058_RS10895 0.88 +0.1 536,753 - HMPREF1058_RS10895 0.88 -0.2 536,755 - HMPREF1058_RS10895 0.88 -0.6 536,781 + HMPREF1058_RS10895 0.89 -0.4 536,891 - -0.3 536,892 + -0.5 536,892 + -2.1 536,892 + +0.3 536,896 + -0.2 536,896 + -0.7 536,897 - -3.0 536,906 - +0.0 536,909 + -2.3 536,910 - -0.3 536,955 + -2.1 536,956 - -0.1 537,181 - -0.1 537,186 - +0.8 537,295 + HMPREF1058_RS10890 0.11 +1.3 537,368 + HMPREF1058_RS10890 0.19 -0.4 537,385 + HMPREF1058_RS10890 0.20 +0.8 537,385 + HMPREF1058_RS10890 0.20 +0.5 537,385 + HMPREF1058_RS10890 0.20 +0.8 537,531 - HMPREF1058_RS10890 0.35 +0.8 537,538 + HMPREF1058_RS10890 0.36 +2.3 537,539 - HMPREF1058_RS10890 0.36 +1.2 537,563 + HMPREF1058_RS10890 0.39 +0.1 537,629 - HMPREF1058_RS10890 0.45 +1.0 537,629 - HMPREF1058_RS10890 0.45 +1.5 537,629 - HMPREF1058_RS10890 0.45 +1.5 537,671 + HMPREF1058_RS10890 0.49 +2.7 537,672 - HMPREF1058_RS10890 0.50 -0.3 537,672 - HMPREF1058_RS10890 0.50 -1.1 537,783 + HMPREF1058_RS10890 0.61 +0.1 537,827 + HMPREF1058_RS10890 0.65 +1.1 537,828 - HMPREF1058_RS10890 0.65 +1.1 537,898 + HMPREF1058_RS10890 0.73 -0.4 537,898 + HMPREF1058_RS10890 0.73 +1.4 537,898 + HMPREF1058_RS10890 0.73 +1.3 537,898 + HMPREF1058_RS10890 0.73 +1.2 537,898 + HMPREF1058_RS10890 0.73 +0.5 537,898 + HMPREF1058_RS10890 0.73 -0.5 537,898 + HMPREF1058_RS10890 0.73 +1.7 537,899 - HMPREF1058_RS10890 0.73 +0.6 537,899 - HMPREF1058_RS10890 0.73 +0.5 537,899 - HMPREF1058_RS10890 0.73 -1.8 537,899 - HMPREF1058_RS10890 0.73 +0.8 537,899 - HMPREF1058_RS10890 0.73 +0.9 537,901 - HMPREF1058_RS10890 0.73 +0.2 537,942 + HMPREF1058_RS10890 0.77 +0.0 537,942 + HMPREF1058_RS10890 0.77 +1.0 537,974 - HMPREF1058_RS10890 0.80 +0.9 537,974 - HMPREF1058_RS10890 0.80 +0.1 537,979 - HMPREF1058_RS10890 0.81 -2.9 538,073 + +0.3 538,089 + +1.0 538,089 + +1.8 538,090 - +0.1 538,120 - -0.5 538,121 + +0.8 538,121 + +2.3 538,127 + +0.7 538,132 - +0.8 538,141 + +0.3 538,179 - +1.4 538,206 + +0.0 538,208 + +1.3 538,215 - +0.1 538,217 - -2.1 538,217 - +0.1 538,300 - +0.3 538,300 - -1.7 538,337 + -0.4 538,340 - +0.3 538,344 + -2.1 538,345 - +1.2 538,348 + -0.5 538,361 - +0.7 538,364 - +1.4 538,364 - -1.9 538,500 + +1.3 538,500 + +0.8 538,512 - -2.1 538,512 - +0.9 538,568 - HMPREF1058_RS10885 0.12 +0.9 538,608 - HMPREF1058_RS10885 0.15 +0.9 538,611 + HMPREF1058_RS10885 0.15 +1.2 538,612 - HMPREF1058_RS10885 0.15 +1.5 538,612 - HMPREF1058_RS10885 0.15 +0.5 538,614 - HMPREF1058_RS10885 0.15 +0.5 538,650 - HMPREF1058_RS10885 0.18 +0.2 538,662 + HMPREF1058_RS10885 0.19 +0.7 538,663 - HMPREF1058_RS10885 0.19 +1.5 538,723 + HMPREF1058_RS10885 0.24 +0.6 538,724 - HMPREF1058_RS10885 0.24 +0.9 538,756 + HMPREF1058_RS10885 0.26 +0.1 538,760 - HMPREF1058_RS10885 0.26 +0.8 538,812 + HMPREF1058_RS10885 0.30 +0.4 538,812 + HMPREF1058_RS10885 0.30 +0.1 538,813 - HMPREF1058_RS10885 0.30 +0.3 538,822 - HMPREF1058_RS10885 0.31 +0.8 538,857 - HMPREF1058_RS10885 0.34 +0.0 538,865 - HMPREF1058_RS10885 0.34 +0.7 539,051 + HMPREF1058_RS10885 0.48 +1.5 539,061 - HMPREF1058_RS10885 0.49 +0.9 539,078 - HMPREF1058_RS10885 0.50 -0.1 539,121 - HMPREF1058_RS10885 0.54 +0.9
Or see this region's nucleotide sequence