Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10880 and HMPREF1058_RS10875 are separated by 1 nucleotides HMPREF1058_RS10875 and HMPREF1058_RS20710 are separated by 270 nucleotides HMPREF1058_RS20710 and HMPREF1058_RS10870 are separated by 334 nucleotides
HMPREF1058_RS10880: HMPREF1058_RS10880 - ABC transporter ATP-binding protein, at 539,787 to 541,625
_RS10880
HMPREF1058_RS10875: HMPREF1058_RS10875 - glycosyltransferase, at 541,627 to 542,559
_RS10875
HMPREF1058_RS20710: HMPREF1058_RS20710 - left-handed beta-roll domain-containing protein, at 542,830 to 542,952
_RS20710
HMPREF1058_RS10870: HMPREF1058_RS10870 - hypothetical protein, at 543,287 to 544,744
_RS10870
Position (kb) 541
542
543 Strain fitness (log2 ratio) -2
-1
0
1
2 at 541.656 kb on + strand at 541.738 kb on + strand, within HMPREF1058_RS10875 at 541.738 kb on + strand, within HMPREF1058_RS10875 at 541.738 kb on + strand, within HMPREF1058_RS10875 at 541.739 kb on - strand, within HMPREF1058_RS10875 at 541.739 kb on - strand, within HMPREF1058_RS10875 at 541.739 kb on - strand, within HMPREF1058_RS10875 at 541.739 kb on - strand, within HMPREF1058_RS10875 at 541.740 kb on + strand, within HMPREF1058_RS10875 at 541.740 kb on + strand, within HMPREF1058_RS10875 at 541.741 kb on - strand, within HMPREF1058_RS10875 at 541.741 kb on - strand, within HMPREF1058_RS10875 at 541.741 kb on - strand, within HMPREF1058_RS10875 at 541.741 kb on - strand, within HMPREF1058_RS10875 at 541.743 kb on - strand, within HMPREF1058_RS10875 at 542.006 kb on + strand, within HMPREF1058_RS10875 at 542.076 kb on - strand, within HMPREF1058_RS10875 at 542.131 kb on + strand, within HMPREF1058_RS10875 at 542.150 kb on + strand, within HMPREF1058_RS10875 at 542.150 kb on + strand, within HMPREF1058_RS10875 at 542.244 kb on + strand, within HMPREF1058_RS10875 at 542.367 kb on + strand, within HMPREF1058_RS10875 at 542.368 kb on - strand, within HMPREF1058_RS10875 at 542.419 kb on + strand, within HMPREF1058_RS10875 at 542.419 kb on + strand, within HMPREF1058_RS10875 at 542.420 kb on - strand, within HMPREF1058_RS10875 at 542.420 kb on - strand, within HMPREF1058_RS10875 at 542.420 kb on - strand, within HMPREF1058_RS10875 at 542.420 kb on - strand, within HMPREF1058_RS10875 at 542.420 kb on - strand, within HMPREF1058_RS10875 at 542.451 kb on + strand, within HMPREF1058_RS10875 at 542.458 kb on + strand, within HMPREF1058_RS10875 at 542.461 kb on - strand, within HMPREF1058_RS10875 at 542.463 kb on + strand, within HMPREF1058_RS10875 at 542.464 kb on - strand, within HMPREF1058_RS10875 at 542.464 kb on - strand, within HMPREF1058_RS10875 at 542.464 kb on - strand, within HMPREF1058_RS10875 at 542.464 kb on - strand, within HMPREF1058_RS10875 at 542.464 kb on - strand, within HMPREF1058_RS10875 at 542.465 kb on + strand, within HMPREF1058_RS10875 at 542.465 kb on + strand, within HMPREF1058_RS10875 at 542.465 kb on + strand, within HMPREF1058_RS10875 at 542.465 kb on + strand, within HMPREF1058_RS10875 at 542.466 kb on - strand at 542.466 kb on - strand at 542.466 kb on - strand at 542.487 kb on + strand at 542.488 kb on - strand at 542.523 kb on + strand at 542.524 kb on - strand at 542.567 kb on + strand at 542.626 kb on + strand at 542.626 kb on + strand at 542.626 kb on + strand at 542.627 kb on - strand at 542.627 kb on - strand at 542.627 kb on - strand at 542.627 kb on - strand at 542.627 kb on - strand at 542.656 kb on + strand at 542.660 kb on + strand at 542.661 kb on - strand at 542.672 kb on + strand at 542.687 kb on + strand at 542.690 kb on - strand at 542.950 kb on + strand at 542.973 kb on - strand at 542.994 kb on + strand at 542.994 kb on + strand at 542.994 kb on + strand at 542.995 kb on - strand at 542.995 kb on - strand at 542.995 kb on - strand at 542.995 kb on - strand at 542.995 kb on - strand at 542.995 kb on - strand at 542.995 kb on - strand at 542.998 kb on + strand at 542.998 kb on + strand at 542.998 kb on + strand at 543.125 kb on + strand at 543.150 kb on + strand at 543.192 kb on - strand at 543.207 kb on - strand at 543.230 kb on + strand at 543.230 kb on + strand at 543.262 kb on + strand at 543.282 kb on + strand at 543.287 kb on - strand at 543.310 kb on - strand at 543.443 kb on + strand, within HMPREF1058_RS10870 at 543.444 kb on - strand, within HMPREF1058_RS10870 at 543.450 kb on + strand, within HMPREF1058_RS10870 at 543.461 kb on + strand, within HMPREF1058_RS10870 at 543.461 kb on + strand, within HMPREF1058_RS10870 at 543.502 kb on - strand, within HMPREF1058_RS10870 at 543.512 kb on - strand, within HMPREF1058_RS10870 at 543.521 kb on - strand, within HMPREF1058_RS10870 at 543.557 kb on - strand, within HMPREF1058_RS10870 at 543.558 kb on + strand, within HMPREF1058_RS10870
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3 remove 541,656 + +1.1 541,738 + HMPREF1058_RS10875 0.12 +1.0 541,738 + HMPREF1058_RS10875 0.12 +0.5 541,738 + HMPREF1058_RS10875 0.12 +0.7 541,739 - HMPREF1058_RS10875 0.12 +1.2 541,739 - HMPREF1058_RS10875 0.12 +0.5 541,739 - HMPREF1058_RS10875 0.12 +0.9 541,739 - HMPREF1058_RS10875 0.12 +0.6 541,740 + HMPREF1058_RS10875 0.12 +0.3 541,740 + HMPREF1058_RS10875 0.12 +0.8 541,741 - HMPREF1058_RS10875 0.12 +1.0 541,741 - HMPREF1058_RS10875 0.12 +0.6 541,741 - HMPREF1058_RS10875 0.12 -1.4 541,741 - HMPREF1058_RS10875 0.12 +0.3 541,743 - HMPREF1058_RS10875 0.12 +0.8 542,006 + HMPREF1058_RS10875 0.41 +1.0 542,076 - HMPREF1058_RS10875 0.48 +0.7 542,131 + HMPREF1058_RS10875 0.54 +0.9 542,150 + HMPREF1058_RS10875 0.56 +0.8 542,150 + HMPREF1058_RS10875 0.56 +1.1 542,244 + HMPREF1058_RS10875 0.66 -0.1 542,367 + HMPREF1058_RS10875 0.79 +0.5 542,368 - HMPREF1058_RS10875 0.79 +1.3 542,419 + HMPREF1058_RS10875 0.85 +0.5 542,419 + HMPREF1058_RS10875 0.85 +0.7 542,420 - HMPREF1058_RS10875 0.85 +0.3 542,420 - HMPREF1058_RS10875 0.85 +0.7 542,420 - HMPREF1058_RS10875 0.85 +0.4 542,420 - HMPREF1058_RS10875 0.85 +2.5 542,420 - HMPREF1058_RS10875 0.85 +0.8 542,451 + HMPREF1058_RS10875 0.88 +1.5 542,458 + HMPREF1058_RS10875 0.89 +0.7 542,461 - HMPREF1058_RS10875 0.89 +0.7 542,463 + HMPREF1058_RS10875 0.90 -0.7 542,464 - HMPREF1058_RS10875 0.90 +1.0 542,464 - HMPREF1058_RS10875 0.90 -1.8 542,464 - HMPREF1058_RS10875 0.90 +1.8 542,464 - HMPREF1058_RS10875 0.90 -0.5 542,464 - HMPREF1058_RS10875 0.90 -0.4 542,465 + HMPREF1058_RS10875 0.90 +1.5 542,465 + HMPREF1058_RS10875 0.90 +0.7 542,465 + HMPREF1058_RS10875 0.90 -0.8 542,465 + HMPREF1058_RS10875 0.90 +1.8 542,466 - +0.8 542,466 - +0.8 542,466 - -0.8 542,487 + +0.5 542,488 - +0.6 542,523 + +1.6 542,524 - +1.5 542,567 + +1.0 542,626 + -0.0 542,626 + -1.6 542,626 + -1.2 542,627 - +0.9 542,627 - +0.3 542,627 - -0.2 542,627 - -0.7 542,627 - -0.6 542,656 + +0.6 542,660 + -0.9 542,661 - +0.3 542,672 + -1.0 542,687 + +0.9 542,690 - +1.0 542,950 + +0.5 542,973 - +0.2 542,994 + -0.1 542,994 + -0.3 542,994 + +0.2 542,995 - -0.0 542,995 - +1.7 542,995 - -0.8 542,995 - +0.2 542,995 - +0.2 542,995 - +0.9 542,995 - +0.3 542,998 + -1.7 542,998 + -0.2 542,998 + -1.2 543,125 + -0.5 543,150 + -0.9 543,192 - -1.5 543,207 - +0.1 543,230 + -1.2 543,230 + +0.2 543,262 + -0.2 543,282 + -0.1 543,287 - -0.5 543,310 - -2.4 543,443 + HMPREF1058_RS10870 0.11 -0.7 543,444 - HMPREF1058_RS10870 0.11 +0.5 543,450 + HMPREF1058_RS10870 0.11 +0.1 543,461 + HMPREF1058_RS10870 0.12 -0.7 543,461 + HMPREF1058_RS10870 0.12 -0.4 543,502 - HMPREF1058_RS10870 0.15 -0.1 543,512 - HMPREF1058_RS10870 0.15 +0.4 543,521 - HMPREF1058_RS10870 0.16 +0.4 543,557 - HMPREF1058_RS10870 0.19 +0.4 543,558 + HMPREF1058_RS10870 0.19 +0.2
Or see this region's nucleotide sequence