Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS10665

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS10670 and HMPREF1058_RS10665 are separated by 71 nucleotidesHMPREF1058_RS10665 and HMPREF1058_RS10660 are separated by 25 nucleotidesHMPREF1058_RS10660 and HMPREF1058_RS10655 are separated by 108 nucleotides HMPREF1058_RS10670: HMPREF1058_RS10670 - DUF4221 family protein, at 606,605 to 607,303 _RS10670 HMPREF1058_RS10665: HMPREF1058_RS10665 - hypothetical protein, at 607,375 to 607,659 _RS10665 HMPREF1058_RS10660: HMPREF1058_RS10660 - DUF1573 domain-containing protein, at 607,685 to 608,422 _RS10660 HMPREF1058_RS10655: HMPREF1058_RS10655 - hydroxymyristoyl-ACP dehydratase, at 608,531 to 608,911 _RS10655 Position (kb) 607 608Strain fitness (log2 ratio) -2 -1 0 1 2at 606.685 kb on + strand, within HMPREF1058_RS10670at 606.734 kb on - strand, within HMPREF1058_RS10670at 606.742 kb on + strand, within HMPREF1058_RS10670at 606.743 kb on - strand, within HMPREF1058_RS10670at 606.795 kb on - strand, within HMPREF1058_RS10670at 606.795 kb on - strand, within HMPREF1058_RS10670at 606.795 kb on - strand, within HMPREF1058_RS10670at 606.830 kb on - strand, within HMPREF1058_RS10670at 606.853 kb on + strand, within HMPREF1058_RS10670at 606.935 kb on - strand, within HMPREF1058_RS10670at 606.947 kb on + strand, within HMPREF1058_RS10670at 606.948 kb on - strand, within HMPREF1058_RS10670at 606.950 kb on + strand, within HMPREF1058_RS10670at 606.950 kb on + strand, within HMPREF1058_RS10670at 606.951 kb on - strand, within HMPREF1058_RS10670at 606.951 kb on - strand, within HMPREF1058_RS10670at 606.951 kb on - strand, within HMPREF1058_RS10670at 606.951 kb on - strand, within HMPREF1058_RS10670at 606.951 kb on - strand, within HMPREF1058_RS10670at 606.951 kb on - strand, within HMPREF1058_RS10670at 606.951 kb on - strand, within HMPREF1058_RS10670at 606.952 kb on + strand, within HMPREF1058_RS10670at 606.952 kb on + strand, within HMPREF1058_RS10670at 606.952 kb on + strand, within HMPREF1058_RS10670at 606.953 kb on - strand, within HMPREF1058_RS10670at 606.953 kb on - strand, within HMPREF1058_RS10670at 606.953 kb on - strand, within HMPREF1058_RS10670at 607.052 kb on + strand, within HMPREF1058_RS10670at 607.074 kb on + strand, within HMPREF1058_RS10670at 607.074 kb on + strand, within HMPREF1058_RS10670at 607.108 kb on - strand, within HMPREF1058_RS10670at 607.153 kb on - strand, within HMPREF1058_RS10670at 607.156 kb on - strand, within HMPREF1058_RS10670at 607.253 kb on + strandat 607.253 kb on + strandat 607.254 kb on - strandat 607.265 kb on + strandat 607.265 kb on + strandat 607.281 kb on - strandat 607.306 kb on - strandat 607.325 kb on + strandat 607.330 kb on - strandat 607.334 kb on + strandat 607.361 kb on + strandat 607.433 kb on - strand, within HMPREF1058_RS10665at 607.472 kb on + strand, within HMPREF1058_RS10665at 607.472 kb on + strand, within HMPREF1058_RS10665at 607.472 kb on + strand, within HMPREF1058_RS10665at 607.497 kb on + strand, within HMPREF1058_RS10665at 607.518 kb on + strand, within HMPREF1058_RS10665at 607.530 kb on - strand, within HMPREF1058_RS10665at 607.576 kb on + strand, within HMPREF1058_RS10665at 607.576 kb on + strand, within HMPREF1058_RS10665at 607.577 kb on - strand, within HMPREF1058_RS10665at 607.730 kb on + strandat 607.730 kb on + strandat 607.841 kb on + strand, within HMPREF1058_RS10660at 607.849 kb on + strand, within HMPREF1058_RS10660at 607.849 kb on + strand, within HMPREF1058_RS10660at 607.881 kb on + strand, within HMPREF1058_RS10660at 607.888 kb on + strand, within HMPREF1058_RS10660at 607.911 kb on - strand, within HMPREF1058_RS10660at 608.040 kb on + strand, within HMPREF1058_RS10660at 608.040 kb on + strand, within HMPREF1058_RS10660at 608.061 kb on + strand, within HMPREF1058_RS10660at 608.061 kb on + strand, within HMPREF1058_RS10660at 608.062 kb on - strand, within HMPREF1058_RS10660at 608.062 kb on - strand, within HMPREF1058_RS10660at 608.062 kb on - strand, within HMPREF1058_RS10660at 608.063 kb on + strand, within HMPREF1058_RS10660at 608.063 kb on + strand, within HMPREF1058_RS10660at 608.068 kb on + strand, within HMPREF1058_RS10660at 608.103 kb on - strand, within HMPREF1058_RS10660at 608.103 kb on - strand, within HMPREF1058_RS10660at 608.122 kb on - strand, within HMPREF1058_RS10660at 608.192 kb on - strand, within HMPREF1058_RS10660at 608.192 kb on - strand, within HMPREF1058_RS10660at 608.200 kb on - strand, within HMPREF1058_RS10660at 608.272 kb on + strand, within HMPREF1058_RS10660at 608.276 kb on - strand, within HMPREF1058_RS10660at 608.276 kb on - strand, within HMPREF1058_RS10660at 608.280 kb on - strand, within HMPREF1058_RS10660at 608.314 kb on + strand, within HMPREF1058_RS10660at 608.315 kb on - strand, within HMPREF1058_RS10660at 608.315 kb on - strand, within HMPREF1058_RS10660at 608.315 kb on - strand, within HMPREF1058_RS10660at 608.315 kb on - strand, within HMPREF1058_RS10660at 608.370 kb on + strandat 608.371 kb on - strandat 608.384 kb on + strandat 608.391 kb on + strandat 608.392 kb on - strandat 608.421 kb on + strandat 608.423 kb on - strandat 608.435 kb on + strandat 608.477 kb on + strandat 608.539 kb on - strandat 608.542 kb on + strandat 608.543 kb on - strandat 608.543 kb on - strandat 608.636 kb on + strand, within HMPREF1058_RS10655at 608.649 kb on - strand, within HMPREF1058_RS10655at 608.649 kb on - strand, within HMPREF1058_RS10655

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
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606,685 + HMPREF1058_RS10670 0.11 +0.6
606,734 - HMPREF1058_RS10670 0.18 -1.5
606,742 + HMPREF1058_RS10670 0.20 +0.6
606,743 - HMPREF1058_RS10670 0.20 +0.0
606,795 - HMPREF1058_RS10670 0.27 -1.9
606,795 - HMPREF1058_RS10670 0.27 +0.3
606,795 - HMPREF1058_RS10670 0.27 -0.1
606,830 - HMPREF1058_RS10670 0.32 -0.8
606,853 + HMPREF1058_RS10670 0.35 +0.6
606,935 - HMPREF1058_RS10670 0.47 -0.3
606,947 + HMPREF1058_RS10670 0.49 +0.6
606,948 - HMPREF1058_RS10670 0.49 +1.4
606,950 + HMPREF1058_RS10670 0.49 +0.7
606,950 + HMPREF1058_RS10670 0.49 -1.6
606,951 - HMPREF1058_RS10670 0.49 +0.5
606,951 - HMPREF1058_RS10670 0.49 -0.1
606,951 - HMPREF1058_RS10670 0.49 -0.1
606,951 - HMPREF1058_RS10670 0.49 +1.9
606,951 - HMPREF1058_RS10670 0.49 +0.4
606,951 - HMPREF1058_RS10670 0.49 -1.4
606,951 - HMPREF1058_RS10670 0.49 -0.2
606,952 + HMPREF1058_RS10670 0.50 +1.4
606,952 + HMPREF1058_RS10670 0.50 +0.2
606,952 + HMPREF1058_RS10670 0.50 -0.1
606,953 - HMPREF1058_RS10670 0.50 -0.1
606,953 - HMPREF1058_RS10670 0.50 -0.0
606,953 - HMPREF1058_RS10670 0.50 -1.0
607,052 + HMPREF1058_RS10670 0.64 +0.3
607,074 + HMPREF1058_RS10670 0.67 -0.0
607,074 + HMPREF1058_RS10670 0.67 -2.5
607,108 - HMPREF1058_RS10670 0.72 -1.1
607,153 - HMPREF1058_RS10670 0.78 -0.0
607,156 - HMPREF1058_RS10670 0.79 -0.0
607,253 + -0.2
607,253 + -0.1
607,254 - +0.1
607,265 + +0.2
607,265 + +1.8
607,281 - -0.8
607,306 - +0.6
607,325 + -0.0
607,330 - +0.1
607,334 + +0.5
607,361 + +0.6
607,433 - HMPREF1058_RS10665 0.20 -0.1
607,472 + HMPREF1058_RS10665 0.34 +0.1
607,472 + HMPREF1058_RS10665 0.34 +0.0
607,472 + HMPREF1058_RS10665 0.34 +0.9
607,497 + HMPREF1058_RS10665 0.43 +1.9
607,518 + HMPREF1058_RS10665 0.50 -0.4
607,530 - HMPREF1058_RS10665 0.54 +1.5
607,576 + HMPREF1058_RS10665 0.71 +0.2
607,576 + HMPREF1058_RS10665 0.71 +0.4
607,577 - HMPREF1058_RS10665 0.71 -1.6
607,730 + -0.1
607,730 + -0.5
607,841 + HMPREF1058_RS10660 0.21 +0.1
607,849 + HMPREF1058_RS10660 0.22 +0.1
607,849 + HMPREF1058_RS10660 0.22 +1.2
607,881 + HMPREF1058_RS10660 0.27 -0.1
607,888 + HMPREF1058_RS10660 0.28 +0.3
607,911 - HMPREF1058_RS10660 0.31 -1.2
608,040 + HMPREF1058_RS10660 0.48 -1.6
608,040 + HMPREF1058_RS10660 0.48 -0.1
608,061 + HMPREF1058_RS10660 0.51 +0.3
608,061 + HMPREF1058_RS10660 0.51 -1.5
608,062 - HMPREF1058_RS10660 0.51 -0.2
608,062 - HMPREF1058_RS10660 0.51 +0.9
608,062 - HMPREF1058_RS10660 0.51 +0.5
608,063 + HMPREF1058_RS10660 0.51 +0.2
608,063 + HMPREF1058_RS10660 0.51 -0.8
608,068 + HMPREF1058_RS10660 0.52 -1.4
608,103 - HMPREF1058_RS10660 0.57 -0.7
608,103 - HMPREF1058_RS10660 0.57 -0.8
608,122 - HMPREF1058_RS10660 0.59 +1.1
608,192 - HMPREF1058_RS10660 0.69 -0.4
608,192 - HMPREF1058_RS10660 0.69 -0.2
608,200 - HMPREF1058_RS10660 0.70 -0.7
608,272 + HMPREF1058_RS10660 0.80 +0.8
608,276 - HMPREF1058_RS10660 0.80 -1.1
608,276 - HMPREF1058_RS10660 0.80 -0.5
608,280 - HMPREF1058_RS10660 0.81 -0.2
608,314 + HMPREF1058_RS10660 0.85 +0.6
608,315 - HMPREF1058_RS10660 0.85 +0.2
608,315 - HMPREF1058_RS10660 0.85 +0.8
608,315 - HMPREF1058_RS10660 0.85 +0.1
608,315 - HMPREF1058_RS10660 0.85 -0.4
608,370 + +0.2
608,371 - +0.2
608,384 + +0.4
608,391 + +0.1
608,392 - +0.2
608,421 + -0.3
608,423 - +0.4
608,435 + +0.0
608,477 + +0.2
608,539 - +1.1
608,542 + +0.0
608,543 - +0.6
608,543 - +0.4
608,636 + HMPREF1058_RS10655 0.28 +0.2
608,649 - HMPREF1058_RS10655 0.31 -0.3
608,649 - HMPREF1058_RS10655 0.31 -0.6

Or see this region's nucleotide sequence