Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS10455

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS10460 and HMPREF1058_RS10455 are separated by 170 nucleotidesHMPREF1058_RS10455 and HMPREF1058_RS10450 are separated by 353 nucleotidesHMPREF1058_RS10450 and HMPREF1058_RS10445 overlap by 8 nucleotides HMPREF1058_RS10460: HMPREF1058_RS10460 - NAD-dependent epimerase/dehydratase family protein, at 665,390 to 666,343 _RS10460 HMPREF1058_RS10455: HMPREF1058_RS10455 - glycine C-acetyltransferase, at 666,514 to 667,704 _RS10455 HMPREF1058_RS10450: HMPREF1058_RS10450 - hypothetical protein, at 668,058 to 668,645 _RS10450 HMPREF1058_RS10445: HMPREF1058_RS10445 - N-acetylmuramoyl-L-alanine amidase, at 668,638 to 669,237 _RS10445 Position (kb) 666 667 668Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 665.541 kb on - strand, within HMPREF1058_RS10460at 665.569 kb on + strand, within HMPREF1058_RS10460at 665.572 kb on - strand, within HMPREF1058_RS10460at 665.572 kb on - strand, within HMPREF1058_RS10460at 665.587 kb on + strand, within HMPREF1058_RS10460at 665.587 kb on + strand, within HMPREF1058_RS10460at 665.590 kb on - strand, within HMPREF1058_RS10460at 665.594 kb on - strand, within HMPREF1058_RS10460at 665.646 kb on - strand, within HMPREF1058_RS10460at 665.703 kb on + strand, within HMPREF1058_RS10460at 665.703 kb on + strand, within HMPREF1058_RS10460at 665.703 kb on + strand, within HMPREF1058_RS10460at 665.703 kb on + strand, within HMPREF1058_RS10460at 665.704 kb on - strand, within HMPREF1058_RS10460at 665.711 kb on - strand, within HMPREF1058_RS10460at 665.760 kb on - strand, within HMPREF1058_RS10460at 665.770 kb on - strand, within HMPREF1058_RS10460at 665.780 kb on + strand, within HMPREF1058_RS10460at 665.828 kb on + strand, within HMPREF1058_RS10460at 665.878 kb on - strand, within HMPREF1058_RS10460at 665.904 kb on - strand, within HMPREF1058_RS10460at 665.919 kb on + strand, within HMPREF1058_RS10460at 665.919 kb on + strand, within HMPREF1058_RS10460at 665.920 kb on - strand, within HMPREF1058_RS10460at 665.920 kb on - strand, within HMPREF1058_RS10460at 666.042 kb on - strand, within HMPREF1058_RS10460at 666.110 kb on + strand, within HMPREF1058_RS10460at 666.126 kb on + strand, within HMPREF1058_RS10460at 666.146 kb on - strand, within HMPREF1058_RS10460at 666.188 kb on + strand, within HMPREF1058_RS10460at 666.188 kb on + strand, within HMPREF1058_RS10460at 666.189 kb on - strand, within HMPREF1058_RS10460at 666.189 kb on - strand, within HMPREF1058_RS10460at 666.329 kb on + strandat 666.333 kb on - strandat 666.517 kb on + strandat 666.518 kb on - strandat 666.561 kb on + strandat 666.591 kb on + strandat 666.592 kb on - strandat 666.594 kb on - strandat 666.598 kb on - strandat 666.739 kb on - strand, within HMPREF1058_RS10455at 666.825 kb on + strand, within HMPREF1058_RS10455at 666.830 kb on + strand, within HMPREF1058_RS10455at 666.836 kb on - strand, within HMPREF1058_RS10455at 666.901 kb on - strand, within HMPREF1058_RS10455at 666.927 kb on + strand, within HMPREF1058_RS10455at 666.927 kb on + strand, within HMPREF1058_RS10455at 666.932 kb on + strand, within HMPREF1058_RS10455at 666.932 kb on + strand, within HMPREF1058_RS10455at 666.933 kb on - strand, within HMPREF1058_RS10455at 666.933 kb on - strand, within HMPREF1058_RS10455at 667.038 kb on + strand, within HMPREF1058_RS10455at 667.158 kb on - strand, within HMPREF1058_RS10455at 667.161 kb on - strand, within HMPREF1058_RS10455at 667.276 kb on - strand, within HMPREF1058_RS10455at 667.287 kb on + strand, within HMPREF1058_RS10455at 667.330 kb on - strand, within HMPREF1058_RS10455at 667.407 kb on + strand, within HMPREF1058_RS10455at 667.556 kb on + strand, within HMPREF1058_RS10455at 667.557 kb on - strand, within HMPREF1058_RS10455at 667.558 kb on + strand, within HMPREF1058_RS10455at 667.558 kb on + strand, within HMPREF1058_RS10455at 667.558 kb on + strand, within HMPREF1058_RS10455at 667.558 kb on + strand, within HMPREF1058_RS10455at 667.559 kb on - strand, within HMPREF1058_RS10455at 667.559 kb on - strand, within HMPREF1058_RS10455at 667.559 kb on - strand, within HMPREF1058_RS10455at 667.559 kb on - strand, within HMPREF1058_RS10455at 667.559 kb on - strand, within HMPREF1058_RS10455at 667.669 kb on - strandat 667.702 kb on + strandat 667.732 kb on - strandat 667.753 kb on - strandat 667.833 kb on - strandat 667.875 kb on + strandat 667.887 kb on + strandat 667.887 kb on + strandat 667.887 kb on + strandat 667.888 kb on - strandat 667.888 kb on - strandat 667.895 kb on + strandat 667.900 kb on - strandat 667.996 kb on - strandat 668.010 kb on + strandat 668.011 kb on - strandat 668.074 kb on - strandat 668.075 kb on + strandat 668.076 kb on - strandat 668.077 kb on + strandat 668.084 kb on + strandat 668.085 kb on - strandat 668.085 kb on - strandat 668.086 kb on + strandat 668.087 kb on - strandat 668.087 kb on - strandat 668.087 kb on - strandat 668.087 kb on - strandat 668.087 kb on - strandat 668.087 kb on - strandat 668.132 kb on + strand, within HMPREF1058_RS10450at 668.177 kb on + strand, within HMPREF1058_RS10450at 668.177 kb on + strand, within HMPREF1058_RS10450at 668.177 kb on + strand, within HMPREF1058_RS10450at 668.178 kb on - strand, within HMPREF1058_RS10450at 668.178 kb on - strand, within HMPREF1058_RS10450at 668.181 kb on + strand, within HMPREF1058_RS10450at 668.181 kb on + strand, within HMPREF1058_RS10450at 668.181 kb on + strand, within HMPREF1058_RS10450at 668.182 kb on - strand, within HMPREF1058_RS10450at 668.182 kb on - strand, within HMPREF1058_RS10450at 668.187 kb on - strand, within HMPREF1058_RS10450at 668.211 kb on + strand, within HMPREF1058_RS10450at 668.216 kb on + strand, within HMPREF1058_RS10450at 668.224 kb on - strand, within HMPREF1058_RS10450at 668.257 kb on - strand, within HMPREF1058_RS10450at 668.313 kb on + strand, within HMPREF1058_RS10450at 668.313 kb on + strand, within HMPREF1058_RS10450at 668.313 kb on + strand, within HMPREF1058_RS10450at 668.319 kb on - strand, within HMPREF1058_RS10450at 668.381 kb on + strand, within HMPREF1058_RS10450at 668.394 kb on + strand, within HMPREF1058_RS10450at 668.394 kb on + strand, within HMPREF1058_RS10450at 668.394 kb on + strand, within HMPREF1058_RS10450at 668.395 kb on - strand, within HMPREF1058_RS10450at 668.597 kb on + strandat 668.597 kb on + strandat 668.658 kb on - strandat 668.658 kb on - strandat 668.658 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
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665,541 - HMPREF1058_RS10460 0.16 -2.7
665,569 + HMPREF1058_RS10460 0.19 -0.9
665,572 - HMPREF1058_RS10460 0.19 -2.9
665,572 - HMPREF1058_RS10460 0.19 -1.3
665,587 + HMPREF1058_RS10460 0.21 -0.7
665,587 + HMPREF1058_RS10460 0.21 -0.5
665,590 - HMPREF1058_RS10460 0.21 -0.9
665,594 - HMPREF1058_RS10460 0.21 -0.6
665,646 - HMPREF1058_RS10460 0.27 -2.6
665,703 + HMPREF1058_RS10460 0.33 -0.6
665,703 + HMPREF1058_RS10460 0.33 -0.5
665,703 + HMPREF1058_RS10460 0.33 -2.2
665,703 + HMPREF1058_RS10460 0.33 -3.8
665,704 - HMPREF1058_RS10460 0.33 -0.6
665,711 - HMPREF1058_RS10460 0.34 -1.0
665,760 - HMPREF1058_RS10460 0.39 -2.7
665,770 - HMPREF1058_RS10460 0.40 -0.8
665,780 + HMPREF1058_RS10460 0.41 -1.1
665,828 + HMPREF1058_RS10460 0.46 -0.6
665,878 - HMPREF1058_RS10460 0.51 -0.6
665,904 - HMPREF1058_RS10460 0.54 -0.4
665,919 + HMPREF1058_RS10460 0.55 -0.4
665,919 + HMPREF1058_RS10460 0.55 -0.6
665,920 - HMPREF1058_RS10460 0.56 -1.2
665,920 - HMPREF1058_RS10460 0.56 -0.2
666,042 - HMPREF1058_RS10460 0.68 -1.2
666,110 + HMPREF1058_RS10460 0.75 -1.1
666,126 + HMPREF1058_RS10460 0.77 -0.8
666,146 - HMPREF1058_RS10460 0.79 +0.9
666,188 + HMPREF1058_RS10460 0.84 -0.6
666,188 + HMPREF1058_RS10460 0.84 -3.4
666,189 - HMPREF1058_RS10460 0.84 +0.5
666,189 - HMPREF1058_RS10460 0.84 -0.4
666,329 + -1.4
666,333 - -0.7
666,517 + -0.2
666,518 - +0.6
666,561 + +0.6
666,591 + -0.7
666,592 - +0.6
666,594 - +1.2
666,598 - +0.7
666,739 - HMPREF1058_RS10455 0.19 +1.2
666,825 + HMPREF1058_RS10455 0.26 -0.0
666,830 + HMPREF1058_RS10455 0.27 +0.7
666,836 - HMPREF1058_RS10455 0.27 +0.1
666,901 - HMPREF1058_RS10455 0.32 -0.3
666,927 + HMPREF1058_RS10455 0.35 +0.8
666,927 + HMPREF1058_RS10455 0.35 -0.1
666,932 + HMPREF1058_RS10455 0.35 -0.1
666,932 + HMPREF1058_RS10455 0.35 -0.0
666,933 - HMPREF1058_RS10455 0.35 +0.4
666,933 - HMPREF1058_RS10455 0.35 +0.9
667,038 + HMPREF1058_RS10455 0.44 +0.2
667,158 - HMPREF1058_RS10455 0.54 +1.4
667,161 - HMPREF1058_RS10455 0.54 +1.8
667,276 - HMPREF1058_RS10455 0.64 +0.3
667,287 + HMPREF1058_RS10455 0.65 +0.5
667,330 - HMPREF1058_RS10455 0.69 +0.5
667,407 + HMPREF1058_RS10455 0.75 +0.7
667,556 + HMPREF1058_RS10455 0.87 -0.4
667,557 - HMPREF1058_RS10455 0.88 -0.7
667,558 + HMPREF1058_RS10455 0.88 +1.1
667,558 + HMPREF1058_RS10455 0.88 +0.4
667,558 + HMPREF1058_RS10455 0.88 +0.9
667,558 + HMPREF1058_RS10455 0.88 +0.9
667,559 - HMPREF1058_RS10455 0.88 +0.4
667,559 - HMPREF1058_RS10455 0.88 +0.0
667,559 - HMPREF1058_RS10455 0.88 +0.6
667,559 - HMPREF1058_RS10455 0.88 +1.8
667,559 - HMPREF1058_RS10455 0.88 -0.1
667,669 - +1.1
667,702 + -0.7
667,732 - +0.2
667,753 - -0.7
667,833 - +1.9
667,875 + +0.7
667,887 + -0.0
667,887 + +0.3
667,887 + +0.2
667,888 - -1.7
667,888 - -0.1
667,895 + +0.2
667,900 - -0.2
667,996 - -1.1
668,010 + +0.1
668,011 - +0.4
668,074 - +1.5
668,075 + +0.1
668,076 - +0.8
668,077 + -0.1
668,084 + +0.2
668,085 - -0.1
668,085 - +0.3
668,086 + +0.8
668,087 - +0.3
668,087 - -0.3
668,087 - -0.2
668,087 - +0.1
668,087 - +1.7
668,087 - -1.7
668,132 + HMPREF1058_RS10450 0.13 -0.1
668,177 + HMPREF1058_RS10450 0.20 +0.2
668,177 + HMPREF1058_RS10450 0.20 -0.5
668,177 + HMPREF1058_RS10450 0.20 +0.2
668,178 - HMPREF1058_RS10450 0.20 +0.2
668,178 - HMPREF1058_RS10450 0.20 +0.4
668,181 + HMPREF1058_RS10450 0.21 +0.5
668,181 + HMPREF1058_RS10450 0.21 -1.8
668,181 + HMPREF1058_RS10450 0.21 -1.3
668,182 - HMPREF1058_RS10450 0.21 -0.2
668,182 - HMPREF1058_RS10450 0.21 +0.4
668,187 - HMPREF1058_RS10450 0.22 +0.9
668,211 + HMPREF1058_RS10450 0.26 -0.4
668,216 + HMPREF1058_RS10450 0.27 -0.1
668,224 - HMPREF1058_RS10450 0.28 +0.1
668,257 - HMPREF1058_RS10450 0.34 -0.1
668,313 + HMPREF1058_RS10450 0.43 +0.3
668,313 + HMPREF1058_RS10450 0.43 -0.0
668,313 + HMPREF1058_RS10450 0.43 -0.1
668,319 - HMPREF1058_RS10450 0.44 +0.1
668,381 + HMPREF1058_RS10450 0.55 +0.9
668,394 + HMPREF1058_RS10450 0.57 +0.2
668,394 + HMPREF1058_RS10450 0.57 +0.3
668,394 + HMPREF1058_RS10450 0.57 +0.2
668,395 - HMPREF1058_RS10450 0.57 -1.3
668,597 + -0.8
668,597 + +0.6
668,658 - +0.1
668,658 - +0.4
668,658 - -0.5

Or see this region's nucleotide sequence