Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS0119665 and HMPREF1058_RS10125 are separated by 11 nucleotides HMPREF1058_RS10125 and HMPREF1058_RS10120 overlap by 4 nucleotides HMPREF1058_RS10120 and HMPREF1058_RS10115 are separated by 254 nucleotides
HMPREF1058_RS0119665: HMPREF1058_RS0119665 - recombinase RecT, at 717,716 to 718,705
_RS0119665
HMPREF1058_RS10125: HMPREF1058_RS10125 - AAA family ATPase, at 718,717 to 720,711
_RS10125
HMPREF1058_RS10120: HMPREF1058_RS10120 - hypothetical protein, at 720,708 to 720,995
_RS10120
HMPREF1058_RS10115: HMPREF1058_RS10115 - helix-turn-helix transcriptional regulator, at 721,250 to 721,801
_RS10115
Position (kb) 718
719
720
721 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 717.787 kb on + strand at 717.829 kb on + strand, within HMPREF1058_RS0119665 at 717.907 kb on + strand, within HMPREF1058_RS0119665 at 717.914 kb on + strand, within HMPREF1058_RS0119665 at 718.499 kb on + strand, within HMPREF1058_RS0119665 at 718.499 kb on + strand, within HMPREF1058_RS0119665 at 718.499 kb on + strand, within HMPREF1058_RS0119665 at 718.526 kb on + strand, within HMPREF1058_RS0119665 at 718.526 kb on + strand, within HMPREF1058_RS0119665 at 718.564 kb on + strand, within HMPREF1058_RS0119665 at 718.669 kb on + strand at 718.718 kb on + strand at 718.762 kb on + strand at 718.762 kb on + strand at 718.798 kb on + strand at 718.798 kb on + strand at 718.801 kb on + strand at 718.821 kb on + strand at 718.885 kb on + strand at 718.887 kb on + strand at 718.887 kb on + strand at 718.897 kb on + strand at 718.899 kb on + strand at 718.977 kb on + strand, within HMPREF1058_RS10125 at 718.977 kb on + strand, within HMPREF1058_RS10125 at 718.977 kb on + strand, within HMPREF1058_RS10125 at 719.218 kb on + strand, within HMPREF1058_RS10125 at 719.268 kb on + strand, within HMPREF1058_RS10125 at 719.442 kb on + strand, within HMPREF1058_RS10125 at 719.590 kb on + strand, within HMPREF1058_RS10125 at 719.673 kb on + strand, within HMPREF1058_RS10125 at 719.806 kb on + strand, within HMPREF1058_RS10125 at 720.100 kb on + strand, within HMPREF1058_RS10125 at 720.219 kb on + strand, within HMPREF1058_RS10125 at 720.254 kb on + strand, within HMPREF1058_RS10125 at 720.317 kb on + strand, within HMPREF1058_RS10125 at 720.317 kb on + strand, within HMPREF1058_RS10125 at 720.420 kb on + strand, within HMPREF1058_RS10125 at 720.484 kb on + strand, within HMPREF1058_RS10125 at 720.484 kb on + strand, within HMPREF1058_RS10125 at 720.516 kb on + strand at 720.700 kb on + strand at 720.724 kb on + strand at 720.724 kb on + strand at 720.724 kb on + strand at 720.724 kb on + strand at 720.724 kb on + strand at 720.780 kb on + strand, within HMPREF1058_RS10120 at 720.812 kb on + strand, within HMPREF1058_RS10120 at 720.871 kb on + strand, within HMPREF1058_RS10120 at 720.871 kb on + strand, within HMPREF1058_RS10120 at 720.984 kb on + strand at 720.996 kb on + strand at 721.078 kb on + strand at 721.084 kb on + strand at 721.084 kb on + strand at 721.095 kb on + strand at 721.095 kb on + strand at 721.211 kb on + strand at 721.429 kb on + strand, within HMPREF1058_RS10115 at 721.557 kb on + strand, within HMPREF1058_RS10115 at 721.559 kb on + strand, within HMPREF1058_RS10115 at 721.656 kb on + strand, within HMPREF1058_RS10115 at 721.656 kb on + strand, within HMPREF1058_RS10115
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3 remove 717,787 + -0.1 717,829 + HMPREF1058_RS0119665 0.11 -1.3 717,907 + HMPREF1058_RS0119665 0.19 -0.7 717,914 + HMPREF1058_RS0119665 0.20 -2.2 718,499 + HMPREF1058_RS0119665 0.79 +0.3 718,499 + HMPREF1058_RS0119665 0.79 -0.2 718,499 + HMPREF1058_RS0119665 0.79 +0.3 718,526 + HMPREF1058_RS0119665 0.82 -1.3 718,526 + HMPREF1058_RS0119665 0.82 -0.5 718,564 + HMPREF1058_RS0119665 0.86 +0.2 718,669 + +1.0 718,718 + -0.2 718,762 + +0.1 718,762 + +0.1 718,798 + -0.1 718,798 + -1.5 718,801 + -1.9 718,821 + -0.0 718,885 + +0.3 718,887 + -3.1 718,887 + -0.2 718,897 + +0.5 718,899 + -0.1 718,977 + HMPREF1058_RS10125 0.13 +1.4 718,977 + HMPREF1058_RS10125 0.13 +0.2 718,977 + HMPREF1058_RS10125 0.13 -0.3 719,218 + HMPREF1058_RS10125 0.25 -0.4 719,268 + HMPREF1058_RS10125 0.28 +1.2 719,442 + HMPREF1058_RS10125 0.36 +0.5 719,590 + HMPREF1058_RS10125 0.44 +0.5 719,673 + HMPREF1058_RS10125 0.48 +1.0 719,806 + HMPREF1058_RS10125 0.55 +0.2 720,100 + HMPREF1058_RS10125 0.69 +0.1 720,219 + HMPREF1058_RS10125 0.75 +0.9 720,254 + HMPREF1058_RS10125 0.77 -1.3 720,317 + HMPREF1058_RS10125 0.80 -1.4 720,317 + HMPREF1058_RS10125 0.80 -0.5 720,420 + HMPREF1058_RS10125 0.85 +0.3 720,484 + HMPREF1058_RS10125 0.89 +0.8 720,484 + HMPREF1058_RS10125 0.89 +0.2 720,516 + +0.1 720,700 + -0.2 720,724 + -1.3 720,724 + +0.0 720,724 + -0.2 720,724 + -1.1 720,724 + -0.2 720,780 + HMPREF1058_RS10120 0.25 +0.2 720,812 + HMPREF1058_RS10120 0.36 +1.3 720,871 + HMPREF1058_RS10120 0.57 +1.1 720,871 + HMPREF1058_RS10120 0.57 -1.2 720,984 + -1.7 720,996 + +0.7 721,078 + +0.5 721,084 + -1.0 721,084 + -0.0 721,095 + +0.5 721,095 + +0.1 721,211 + -0.6 721,429 + HMPREF1058_RS10115 0.32 -0.1 721,557 + HMPREF1058_RS10115 0.56 -0.4 721,559 + HMPREF1058_RS10115 0.56 +0.9 721,656 + HMPREF1058_RS10115 0.74 +0.0 721,656 + HMPREF1058_RS10115 0.74 -0.8
Or see this region's nucleotide sequence