Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09830 and HMPREF1058_RS09825 are separated by 301 nucleotides HMPREF1058_RS09825 and HMPREF1058_RS09820 are separated by 238 nucleotides HMPREF1058_RS09820 and HMPREF1058_RS09815 are separated by 279 nucleotides
HMPREF1058_RS09830: HMPREF1058_RS09830 - ATP-binding protein, at 779,094 to 780,224
_RS09830
HMPREF1058_RS09825: HMPREF1058_RS09825 - RteC domain-containing protein, at 780,526 to 781,131
_RS09825
HMPREF1058_RS09820: HMPREF1058_RS09820 - dihydrofolate reductase family protein, at 781,370 to 781,792
_RS09820
HMPREF1058_RS09815: HMPREF1058_RS09815 - sigma-54-dependent Fis family transcriptional regulator, at 782,072 to 783,394
_RS09815
Position (kb) 780
781
782 Strain fitness (log2 ratio) -2
-1
0
1
2 at 779.556 kb on + strand, within HMPREF1058_RS09830 at 779.595 kb on + strand, within HMPREF1058_RS09830 at 779.689 kb on - strand, within HMPREF1058_RS09830 at 779.692 kb on + strand, within HMPREF1058_RS09830 at 779.693 kb on - strand, within HMPREF1058_RS09830 at 779.711 kb on - strand, within HMPREF1058_RS09830 at 779.711 kb on - strand, within HMPREF1058_RS09830 at 779.870 kb on + strand, within HMPREF1058_RS09830 at 779.913 kb on + strand, within HMPREF1058_RS09830 at 779.949 kb on - strand, within HMPREF1058_RS09830 at 780.010 kb on - strand, within HMPREF1058_RS09830 at 780.051 kb on + strand, within HMPREF1058_RS09830 at 780.052 kb on - strand, within HMPREF1058_RS09830 at 780.097 kb on + strand, within HMPREF1058_RS09830 at 780.098 kb on - strand, within HMPREF1058_RS09830 at 780.098 kb on - strand, within HMPREF1058_RS09830 at 780.209 kb on + strand at 780.210 kb on - strand at 780.225 kb on - strand at 780.357 kb on - strand at 780.358 kb on + strand at 780.438 kb on + strand at 780.441 kb on - strand at 780.441 kb on - strand at 780.492 kb on + strand at 780.508 kb on + strand at 780.508 kb on + strand at 780.509 kb on - strand at 780.676 kb on + strand, within HMPREF1058_RS09825 at 780.756 kb on + strand, within HMPREF1058_RS09825 at 780.756 kb on + strand, within HMPREF1058_RS09825 at 780.835 kb on + strand, within HMPREF1058_RS09825 at 780.940 kb on - strand, within HMPREF1058_RS09825 at 781.183 kb on + strand at 781.324 kb on + strand at 781.325 kb on - strand at 781.330 kb on - strand at 781.349 kb on + strand at 781.349 kb on + strand at 781.349 kb on + strand at 781.395 kb on + strand at 781.395 kb on + strand at 781.396 kb on - strand at 781.396 kb on - strand at 781.512 kb on + strand, within HMPREF1058_RS09820 at 781.512 kb on + strand, within HMPREF1058_RS09820 at 781.513 kb on - strand, within HMPREF1058_RS09820 at 781.513 kb on - strand, within HMPREF1058_RS09820 at 781.513 kb on - strand, within HMPREF1058_RS09820 at 781.513 kb on - strand, within HMPREF1058_RS09820 at 781.513 kb on - strand, within HMPREF1058_RS09820 at 781.518 kb on - strand, within HMPREF1058_RS09820 at 781.557 kb on - strand, within HMPREF1058_RS09820 at 781.558 kb on + strand, within HMPREF1058_RS09820 at 781.559 kb on - strand, within HMPREF1058_RS09820 at 781.663 kb on - strand, within HMPREF1058_RS09820 at 781.731 kb on + strand, within HMPREF1058_RS09820 at 781.731 kb on + strand, within HMPREF1058_RS09820 at 781.786 kb on + strand at 781.828 kb on - strand at 781.844 kb on + strand at 781.911 kb on + strand at 781.912 kb on - strand at 781.983 kb on + strand at 781.988 kb on + strand at 781.989 kb on - strand at 781.989 kb on - strand at 781.990 kb on + strand at 781.991 kb on - strand at 781.991 kb on - strand at 782.096 kb on - strand at 782.121 kb on + strand at 782.121 kb on + strand at 782.121 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3 remove 779,556 + HMPREF1058_RS09830 0.41 +0.5 779,595 + HMPREF1058_RS09830 0.44 +0.0 779,689 - HMPREF1058_RS09830 0.53 -0.4 779,692 + HMPREF1058_RS09830 0.53 +0.4 779,693 - HMPREF1058_RS09830 0.53 +0.1 779,711 - HMPREF1058_RS09830 0.55 +0.3 779,711 - HMPREF1058_RS09830 0.55 -0.4 779,870 + HMPREF1058_RS09830 0.69 +0.0 779,913 + HMPREF1058_RS09830 0.72 +0.2 779,949 - HMPREF1058_RS09830 0.76 -1.0 780,010 - HMPREF1058_RS09830 0.81 +0.7 780,051 + HMPREF1058_RS09830 0.85 +0.3 780,052 - HMPREF1058_RS09830 0.85 -0.8 780,097 + HMPREF1058_RS09830 0.89 -1.6 780,098 - HMPREF1058_RS09830 0.89 -2.2 780,098 - HMPREF1058_RS09830 0.89 -0.1 780,209 + +0.5 780,210 - -0.1 780,225 - -0.1 780,357 - -0.0 780,358 + +0.3 780,438 + +0.2 780,441 - +0.3 780,441 - -0.7 780,492 + +0.0 780,508 + -0.4 780,508 + -0.4 780,509 - +0.7 780,676 + HMPREF1058_RS09825 0.25 +0.7 780,756 + HMPREF1058_RS09825 0.38 +0.7 780,756 + HMPREF1058_RS09825 0.38 +0.2 780,835 + HMPREF1058_RS09825 0.51 +0.7 780,940 - HMPREF1058_RS09825 0.68 +1.2 781,183 + -0.4 781,324 + +0.3 781,325 - +0.2 781,330 - -1.0 781,349 + -0.1 781,349 + +0.2 781,349 + +0.3 781,395 + +1.0 781,395 + -0.0 781,396 - +0.3 781,396 - -0.3 781,512 + HMPREF1058_RS09820 0.34 +0.5 781,512 + HMPREF1058_RS09820 0.34 +0.3 781,513 - HMPREF1058_RS09820 0.34 +0.7 781,513 - HMPREF1058_RS09820 0.34 -0.5 781,513 - HMPREF1058_RS09820 0.34 +1.0 781,513 - HMPREF1058_RS09820 0.34 +0.3 781,513 - HMPREF1058_RS09820 0.34 -1.6 781,518 - HMPREF1058_RS09820 0.35 +0.1 781,557 - HMPREF1058_RS09820 0.44 -0.6 781,558 + HMPREF1058_RS09820 0.44 +0.6 781,559 - HMPREF1058_RS09820 0.45 -0.4 781,663 - HMPREF1058_RS09820 0.69 +1.9 781,731 + HMPREF1058_RS09820 0.85 -1.0 781,731 + HMPREF1058_RS09820 0.85 +0.5 781,786 + -0.4 781,828 - +0.5 781,844 + +0.7 781,911 + +0.4 781,912 - -0.2 781,983 + -0.9 781,988 + +0.6 781,989 - -0.8 781,989 - -0.1 781,990 + -0.4 781,991 - +0.2 781,991 - +0.6 782,096 - +0.2 782,121 + -1.0 782,121 + -0.7 782,121 + +0.2
Or see this region's nucleotide sequence