Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07520 and HMPREF1058_RS07515 are separated by 268 nucleotides HMPREF1058_RS07515 and HMPREF1058_RS07510 are separated by 67 nucleotides
HMPREF1058_RS07520: HMPREF1058_RS07520 - metallophosphoesterase, at 199,211 to 199,828
_RS07520
HMPREF1058_RS07515: HMPREF1058_RS07515 - helix-turn-helix transcriptional regulator, at 200,097 to 200,300
_RS07515
HMPREF1058_RS07510: HMPREF1058_RS07510 - DUF262 domain-containing protein, at 200,368 to 202,107
_RS07510
Position (kb) 200
201 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 199.112 kb on - strand at 199.112 kb on - strand at 199.186 kb on - strand at 199.215 kb on - strand at 199.227 kb on - strand at 199.246 kb on - strand at 199.332 kb on + strand, within HMPREF1058_RS07520 at 199.358 kb on + strand, within HMPREF1058_RS07520 at 199.441 kb on + strand, within HMPREF1058_RS07520 at 199.442 kb on - strand, within HMPREF1058_RS07520 at 199.442 kb on - strand, within HMPREF1058_RS07520 at 199.450 kb on + strand, within HMPREF1058_RS07520 at 199.457 kb on - strand, within HMPREF1058_RS07520 at 199.481 kb on - strand, within HMPREF1058_RS07520 at 199.506 kb on + strand, within HMPREF1058_RS07520 at 199.568 kb on - strand, within HMPREF1058_RS07520 at 199.633 kb on + strand, within HMPREF1058_RS07520 at 199.637 kb on + strand, within HMPREF1058_RS07520 at 199.638 kb on - strand, within HMPREF1058_RS07520 at 199.709 kb on - strand, within HMPREF1058_RS07520 at 199.777 kb on + strand at 199.778 kb on - strand at 199.802 kb on + strand at 199.803 kb on - strand at 199.812 kb on - strand at 199.861 kb on + strand at 199.868 kb on - strand at 199.899 kb on + strand at 199.947 kb on + strand at 199.948 kb on - strand at 199.948 kb on - strand at 199.963 kb on - strand at 199.963 kb on - strand at 199.974 kb on - strand at 200.019 kb on + strand at 200.020 kb on - strand at 200.020 kb on - strand at 200.033 kb on + strand at 200.042 kb on - strand at 200.051 kb on - strand at 200.059 kb on + strand at 200.060 kb on - strand at 200.108 kb on + strand at 200.233 kb on + strand, within HMPREF1058_RS07515 at 200.234 kb on - strand, within HMPREF1058_RS07515 at 200.251 kb on + strand, within HMPREF1058_RS07515 at 200.252 kb on - strand, within HMPREF1058_RS07515 at 200.252 kb on - strand, within HMPREF1058_RS07515 at 200.299 kb on - strand at 200.301 kb on + strand at 200.306 kb on + strand at 200.307 kb on - strand at 200.324 kb on + strand at 200.325 kb on - strand at 200.344 kb on + strand at 200.345 kb on - strand at 200.345 kb on - strand at 200.351 kb on + strand at 200.357 kb on + strand at 200.357 kb on + strand at 200.364 kb on + strand at 200.378 kb on + strand at 200.426 kb on - strand at 200.436 kb on + strand at 200.438 kb on + strand at 200.439 kb on - strand at 200.481 kb on + strand at 200.606 kb on + strand, within HMPREF1058_RS07510 at 200.606 kb on + strand, within HMPREF1058_RS07510 at 200.637 kb on + strand, within HMPREF1058_RS07510 at 200.638 kb on - strand, within HMPREF1058_RS07510 at 200.664 kb on + strand, within HMPREF1058_RS07510 at 200.669 kb on + strand, within HMPREF1058_RS07510 at 200.669 kb on + strand, within HMPREF1058_RS07510 at 200.670 kb on - strand, within HMPREF1058_RS07510 at 200.670 kb on - strand, within HMPREF1058_RS07510 at 200.676 kb on + strand, within HMPREF1058_RS07510 at 200.970 kb on - strand, within HMPREF1058_RS07510 at 201.054 kb on + strand, within HMPREF1058_RS07510 at 201.075 kb on + strand, within HMPREF1058_RS07510 at 201.199 kb on + strand, within HMPREF1058_RS07510 at 201.199 kb on + strand, within HMPREF1058_RS07510
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3 remove 199,112 - +0.2 199,112 - +1.9 199,186 - -0.4 199,215 - +0.0 199,227 - -0.4 199,246 - +0.2 199,332 + HMPREF1058_RS07520 0.20 -1.1 199,358 + HMPREF1058_RS07520 0.24 -0.3 199,441 + HMPREF1058_RS07520 0.37 +0.5 199,442 - HMPREF1058_RS07520 0.37 +0.2 199,442 - HMPREF1058_RS07520 0.37 +0.1 199,450 + HMPREF1058_RS07520 0.39 -2.0 199,457 - HMPREF1058_RS07520 0.40 -0.8 199,481 - HMPREF1058_RS07520 0.44 +0.5 199,506 + HMPREF1058_RS07520 0.48 -1.5 199,568 - HMPREF1058_RS07520 0.58 +0.2 199,633 + HMPREF1058_RS07520 0.68 +1.0 199,637 + HMPREF1058_RS07520 0.69 -1.0 199,638 - HMPREF1058_RS07520 0.69 -0.4 199,709 - HMPREF1058_RS07520 0.81 +0.2 199,777 + -0.3 199,778 - +0.0 199,802 + -0.4 199,803 - +0.1 199,812 - -0.1 199,861 + -1.8 199,868 - -0.2 199,899 + -0.3 199,947 + -0.1 199,948 - +0.6 199,948 - +0.3 199,963 - -1.5 199,963 - +1.6 199,974 - -1.5 200,019 + -0.3 200,020 - +0.9 200,020 - -2.0 200,033 + -0.7 200,042 - +0.4 200,051 - +0.0 200,059 + +0.4 200,060 - +0.2 200,108 + +0.2 200,233 + HMPREF1058_RS07515 0.67 +0.2 200,234 - HMPREF1058_RS07515 0.67 -3.4 200,251 + HMPREF1058_RS07515 0.75 -0.3 200,252 - HMPREF1058_RS07515 0.76 +0.7 200,252 - HMPREF1058_RS07515 0.76 +0.4 200,299 - -0.6 200,301 + -1.1 200,306 + -0.4 200,307 - -0.4 200,324 + -0.7 200,325 - -1.0 200,344 + -1.5 200,345 - +0.6 200,345 - +0.0 200,351 + -0.5 200,357 + +0.2 200,357 + +0.6 200,364 + -1.7 200,378 + -0.8 200,426 - +0.5 200,436 + +0.4 200,438 + +0.4 200,439 - -0.8 200,481 + -0.1 200,606 + HMPREF1058_RS07510 0.14 +0.2 200,606 + HMPREF1058_RS07510 0.14 -0.8 200,637 + HMPREF1058_RS07510 0.15 -0.4 200,638 - HMPREF1058_RS07510 0.16 +1.3 200,664 + HMPREF1058_RS07510 0.17 -0.6 200,669 + HMPREF1058_RS07510 0.17 -1.0 200,669 + HMPREF1058_RS07510 0.17 -0.6 200,670 - HMPREF1058_RS07510 0.17 +0.0 200,670 - HMPREF1058_RS07510 0.17 -1.2 200,676 + HMPREF1058_RS07510 0.18 +1.9 200,970 - HMPREF1058_RS07510 0.35 -0.6 201,054 + HMPREF1058_RS07510 0.39 -1.1 201,075 + HMPREF1058_RS07510 0.41 +0.2 201,199 + HMPREF1058_RS07510 0.48 +0.5 201,199 + HMPREF1058_RS07510 0.48 -0.5
Or see this region's nucleotide sequence