Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS07370

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS07375 and HMPREF1058_RS07370 are separated by 174 nucleotidesHMPREF1058_RS07370 and HMPREF1058_RS07365 are separated by 223 nucleotidesHMPREF1058_RS07365 and HMPREF1058_RS07360 overlap by 4 nucleotides HMPREF1058_RS07375: HMPREF1058_RS07375 - DUF4982 domain-containing protein, at 248,080 to 250,584 _RS07375 HMPREF1058_RS07370: HMPREF1058_RS07370 - N-acetylglucosamine-6-phosphate deacetylase, at 250,759 to 251,922 _RS07370 HMPREF1058_RS07365: HMPREF1058_RS07365 - ATP-binding cassette domain-containing protein, at 252,146 to 252,799 _RS07365 HMPREF1058_RS07360: HMPREF1058_RS07360 - hypothetical protein, at 252,796 to 253,725 _RS07360 Position (kb) 250 251 252Strain fitness (log2 ratio) -2 -1 0 1 2 3at 249.795 kb on - strand, within HMPREF1058_RS07375at 249.833 kb on - strand, within HMPREF1058_RS07375at 249.833 kb on - strand, within HMPREF1058_RS07375at 249.835 kb on + strand, within HMPREF1058_RS07375at 249.837 kb on + strand, within HMPREF1058_RS07375at 249.908 kb on - strand, within HMPREF1058_RS07375at 250.082 kb on + strand, within HMPREF1058_RS07375at 250.095 kb on + strand, within HMPREF1058_RS07375at 250.113 kb on + strand, within HMPREF1058_RS07375at 250.115 kb on + strand, within HMPREF1058_RS07375at 250.115 kb on + strand, within HMPREF1058_RS07375at 250.382 kb on - strandat 250.503 kb on + strandat 250.752 kb on + strandat 250.839 kb on + strandat 250.855 kb on - strandat 250.868 kb on + strandat 250.869 kb on - strandat 250.905 kb on + strand, within HMPREF1058_RS07370at 250.906 kb on - strand, within HMPREF1058_RS07370at 250.909 kb on + strand, within HMPREF1058_RS07370at 250.909 kb on + strand, within HMPREF1058_RS07370at 250.909 kb on + strand, within HMPREF1058_RS07370at 250.993 kb on - strand, within HMPREF1058_RS07370at 251.026 kb on - strand, within HMPREF1058_RS07370at 251.149 kb on + strand, within HMPREF1058_RS07370at 251.155 kb on - strand, within HMPREF1058_RS07370at 251.157 kb on + strand, within HMPREF1058_RS07370at 251.158 kb on - strand, within HMPREF1058_RS07370at 251.216 kb on - strand, within HMPREF1058_RS07370at 251.217 kb on + strand, within HMPREF1058_RS07370at 251.218 kb on - strand, within HMPREF1058_RS07370at 251.228 kb on + strand, within HMPREF1058_RS07370at 251.244 kb on + strand, within HMPREF1058_RS07370at 251.244 kb on + strand, within HMPREF1058_RS07370at 251.299 kb on + strand, within HMPREF1058_RS07370at 251.299 kb on + strand, within HMPREF1058_RS07370at 251.300 kb on - strand, within HMPREF1058_RS07370at 251.301 kb on + strand, within HMPREF1058_RS07370at 251.338 kb on - strand, within HMPREF1058_RS07370at 251.338 kb on - strand, within HMPREF1058_RS07370at 251.404 kb on + strand, within HMPREF1058_RS07370at 251.446 kb on + strand, within HMPREF1058_RS07370at 251.447 kb on - strand, within HMPREF1058_RS07370at 251.447 kb on - strand, within HMPREF1058_RS07370at 251.454 kb on + strand, within HMPREF1058_RS07370at 251.455 kb on - strand, within HMPREF1058_RS07370at 251.466 kb on + strand, within HMPREF1058_RS07370at 251.543 kb on + strand, within HMPREF1058_RS07370at 251.544 kb on - strand, within HMPREF1058_RS07370at 251.544 kb on - strand, within HMPREF1058_RS07370at 251.546 kb on - strand, within HMPREF1058_RS07370at 251.618 kb on + strand, within HMPREF1058_RS07370at 251.619 kb on - strand, within HMPREF1058_RS07370at 251.799 kb on - strand, within HMPREF1058_RS07370at 251.799 kb on - strand, within HMPREF1058_RS07370at 251.801 kb on - strand, within HMPREF1058_RS07370at 251.841 kb on + strandat 251.914 kb on - strandat 251.935 kb on + strandat 251.935 kb on + strandat 251.935 kb on + strandat 251.957 kb on + strandat 251.986 kb on + strandat 252.120 kb on - strandat 252.122 kb on - strandat 252.122 kb on - strandat 252.164 kb on + strandat 252.164 kb on + strandat 252.164 kb on + strandat 252.164 kb on + strandat 252.167 kb on + strandat 252.168 kb on - strandat 252.168 kb on - strandat 252.168 kb on - strandat 252.169 kb on + strandat 252.170 kb on - strandat 252.205 kb on - strandat 252.214 kb on - strand, within HMPREF1058_RS07365at 252.217 kb on + strand, within HMPREF1058_RS07365at 252.244 kb on + strand, within HMPREF1058_RS07365at 252.340 kb on + strand, within HMPREF1058_RS07365at 252.341 kb on - strand, within HMPREF1058_RS07365at 252.341 kb on - strand, within HMPREF1058_RS07365at 252.415 kb on + strand, within HMPREF1058_RS07365at 252.642 kb on + strand, within HMPREF1058_RS07365at 252.662 kb on - strand, within HMPREF1058_RS07365at 252.712 kb on - strand, within HMPREF1058_RS07365at 252.780 kb on - strandat 252.803 kb on - strandat 252.846 kb on + strandat 252.892 kb on + strand, within HMPREF1058_RS07360at 252.912 kb on + strand, within HMPREF1058_RS07360at 252.916 kb on + strand, within HMPREF1058_RS07360at 252.917 kb on - strand, within HMPREF1058_RS07360

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
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249,795 - HMPREF1058_RS07375 0.68 -1.7
249,833 - HMPREF1058_RS07375 0.70 +0.5
249,833 - HMPREF1058_RS07375 0.70 -0.1
249,835 + HMPREF1058_RS07375 0.70 -0.8
249,837 + HMPREF1058_RS07375 0.70 -0.1
249,908 - HMPREF1058_RS07375 0.73 -1.0
250,082 + HMPREF1058_RS07375 0.80 -1.2
250,095 + HMPREF1058_RS07375 0.80 -0.7
250,113 + HMPREF1058_RS07375 0.81 -1.2
250,115 + HMPREF1058_RS07375 0.81 +0.2
250,115 + HMPREF1058_RS07375 0.81 -0.2
250,382 - +1.0
250,503 + -0.3
250,752 + +0.9
250,839 + +1.5
250,855 - +1.0
250,868 + +0.8
250,869 - +0.4
250,905 + HMPREF1058_RS07370 0.13 +3.7
250,906 - HMPREF1058_RS07370 0.13 -0.3
250,909 + HMPREF1058_RS07370 0.13 +0.9
250,909 + HMPREF1058_RS07370 0.13 +1.1
250,909 + HMPREF1058_RS07370 0.13 +0.7
250,993 - HMPREF1058_RS07370 0.20 -0.2
251,026 - HMPREF1058_RS07370 0.23 +0.5
251,149 + HMPREF1058_RS07370 0.34 +0.5
251,155 - HMPREF1058_RS07370 0.34 +0.6
251,157 + HMPREF1058_RS07370 0.34 +0.4
251,158 - HMPREF1058_RS07370 0.34 +0.4
251,216 - HMPREF1058_RS07370 0.39 -1.8
251,217 + HMPREF1058_RS07370 0.39 +0.7
251,218 - HMPREF1058_RS07370 0.39 +0.9
251,228 + HMPREF1058_RS07370 0.40 +0.1
251,244 + HMPREF1058_RS07370 0.42 +0.2
251,244 + HMPREF1058_RS07370 0.42 +0.8
251,299 + HMPREF1058_RS07370 0.46 +1.2
251,299 + HMPREF1058_RS07370 0.46 +0.7
251,300 - HMPREF1058_RS07370 0.46 +0.3
251,301 + HMPREF1058_RS07370 0.47 +0.2
251,338 - HMPREF1058_RS07370 0.50 +1.7
251,338 - HMPREF1058_RS07370 0.50 -0.1
251,404 + HMPREF1058_RS07370 0.55 -0.0
251,446 + HMPREF1058_RS07370 0.59 +1.0
251,447 - HMPREF1058_RS07370 0.59 -0.2
251,447 - HMPREF1058_RS07370 0.59 +0.2
251,454 + HMPREF1058_RS07370 0.60 +0.1
251,455 - HMPREF1058_RS07370 0.60 +0.4
251,466 + HMPREF1058_RS07370 0.61 +1.7
251,543 + HMPREF1058_RS07370 0.67 +0.9
251,544 - HMPREF1058_RS07370 0.67 -0.9
251,544 - HMPREF1058_RS07370 0.67 -0.5
251,546 - HMPREF1058_RS07370 0.68 +0.6
251,618 + HMPREF1058_RS07370 0.74 +0.3
251,619 - HMPREF1058_RS07370 0.74 +0.8
251,799 - HMPREF1058_RS07370 0.89 +0.7
251,799 - HMPREF1058_RS07370 0.89 +0.1
251,801 - HMPREF1058_RS07370 0.90 +0.8
251,841 + +0.3
251,914 - -0.9
251,935 + +0.4
251,935 + +0.7
251,935 + +0.4
251,957 + +0.9
251,986 + -0.1
252,120 - +0.1
252,122 - +0.0
252,122 - +0.4
252,164 + -0.0
252,164 + -0.3
252,164 + +1.8
252,164 + -0.1
252,167 + -2.1
252,168 - +0.4
252,168 - +0.6
252,168 - +0.4
252,169 + -0.1
252,170 - -1.3
252,205 - +0.0
252,214 - HMPREF1058_RS07365 0.10 +0.7
252,217 + HMPREF1058_RS07365 0.11 +0.3
252,244 + HMPREF1058_RS07365 0.15 +0.0
252,340 + HMPREF1058_RS07365 0.30 +0.5
252,341 - HMPREF1058_RS07365 0.30 +0.4
252,341 - HMPREF1058_RS07365 0.30 +0.7
252,415 + HMPREF1058_RS07365 0.41 +0.4
252,642 + HMPREF1058_RS07365 0.76 -1.3
252,662 - HMPREF1058_RS07365 0.79 +0.2
252,712 - HMPREF1058_RS07365 0.87 +0.8
252,780 - +0.3
252,803 - +0.8
252,846 + +0.5
252,892 + HMPREF1058_RS07360 0.10 -0.8
252,912 + HMPREF1058_RS07360 0.12 -0.8
252,916 + HMPREF1058_RS07360 0.13 +0.0
252,917 - HMPREF1058_RS07360 0.13 +2.0

Or see this region's nucleotide sequence