Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS07365

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS07370 and HMPREF1058_RS07365 are separated by 223 nucleotidesHMPREF1058_RS07365 and HMPREF1058_RS07360 overlap by 4 nucleotides HMPREF1058_RS07370: HMPREF1058_RS07370 - N-acetylglucosamine-6-phosphate deacetylase, at 250,759 to 251,922 _RS07370 HMPREF1058_RS07365: HMPREF1058_RS07365 - ATP-binding cassette domain-containing protein, at 252,146 to 252,799 _RS07365 HMPREF1058_RS07360: HMPREF1058_RS07360 - hypothetical protein, at 252,796 to 253,725 _RS07360 Position (kb) 252 253Strain fitness (log2 ratio) -2 -1 0 1 2at 251.149 kb on + strand, within HMPREF1058_RS07370at 251.155 kb on - strand, within HMPREF1058_RS07370at 251.157 kb on + strand, within HMPREF1058_RS07370at 251.158 kb on - strand, within HMPREF1058_RS07370at 251.216 kb on - strand, within HMPREF1058_RS07370at 251.217 kb on + strand, within HMPREF1058_RS07370at 251.218 kb on - strand, within HMPREF1058_RS07370at 251.228 kb on + strand, within HMPREF1058_RS07370at 251.244 kb on + strand, within HMPREF1058_RS07370at 251.244 kb on + strand, within HMPREF1058_RS07370at 251.299 kb on + strand, within HMPREF1058_RS07370at 251.299 kb on + strand, within HMPREF1058_RS07370at 251.300 kb on - strand, within HMPREF1058_RS07370at 251.301 kb on + strand, within HMPREF1058_RS07370at 251.338 kb on - strand, within HMPREF1058_RS07370at 251.338 kb on - strand, within HMPREF1058_RS07370at 251.404 kb on + strand, within HMPREF1058_RS07370at 251.446 kb on + strand, within HMPREF1058_RS07370at 251.447 kb on - strand, within HMPREF1058_RS07370at 251.447 kb on - strand, within HMPREF1058_RS07370at 251.454 kb on + strand, within HMPREF1058_RS07370at 251.455 kb on - strand, within HMPREF1058_RS07370at 251.466 kb on + strand, within HMPREF1058_RS07370at 251.543 kb on + strand, within HMPREF1058_RS07370at 251.544 kb on - strand, within HMPREF1058_RS07370at 251.544 kb on - strand, within HMPREF1058_RS07370at 251.546 kb on - strand, within HMPREF1058_RS07370at 251.618 kb on + strand, within HMPREF1058_RS07370at 251.619 kb on - strand, within HMPREF1058_RS07370at 251.799 kb on - strand, within HMPREF1058_RS07370at 251.799 kb on - strand, within HMPREF1058_RS07370at 251.801 kb on - strand, within HMPREF1058_RS07370at 251.841 kb on + strandat 251.914 kb on - strandat 251.935 kb on + strandat 251.935 kb on + strandat 251.935 kb on + strandat 251.957 kb on + strandat 251.986 kb on + strandat 252.120 kb on - strandat 252.122 kb on - strandat 252.122 kb on - strandat 252.164 kb on + strandat 252.164 kb on + strandat 252.164 kb on + strandat 252.164 kb on + strandat 252.167 kb on + strandat 252.168 kb on - strandat 252.168 kb on - strandat 252.168 kb on - strandat 252.169 kb on + strandat 252.170 kb on - strandat 252.205 kb on - strandat 252.214 kb on - strand, within HMPREF1058_RS07365at 252.217 kb on + strand, within HMPREF1058_RS07365at 252.244 kb on + strand, within HMPREF1058_RS07365at 252.340 kb on + strand, within HMPREF1058_RS07365at 252.341 kb on - strand, within HMPREF1058_RS07365at 252.341 kb on - strand, within HMPREF1058_RS07365at 252.415 kb on + strand, within HMPREF1058_RS07365at 252.642 kb on + strand, within HMPREF1058_RS07365at 252.662 kb on - strand, within HMPREF1058_RS07365at 252.712 kb on - strand, within HMPREF1058_RS07365at 252.780 kb on - strandat 252.803 kb on - strandat 252.846 kb on + strandat 252.892 kb on + strand, within HMPREF1058_RS07360at 252.912 kb on + strand, within HMPREF1058_RS07360at 252.916 kb on + strand, within HMPREF1058_RS07360at 252.917 kb on - strand, within HMPREF1058_RS07360at 252.966 kb on + strand, within HMPREF1058_RS07360at 252.967 kb on - strand, within HMPREF1058_RS07360at 253.001 kb on + strand, within HMPREF1058_RS07360at 253.001 kb on + strand, within HMPREF1058_RS07360at 253.002 kb on - strand, within HMPREF1058_RS07360at 253.002 kb on - strand, within HMPREF1058_RS07360at 253.004 kb on + strand, within HMPREF1058_RS07360at 253.004 kb on + strand, within HMPREF1058_RS07360at 253.005 kb on - strand, within HMPREF1058_RS07360at 253.152 kb on - strand, within HMPREF1058_RS07360at 253.202 kb on - strand, within HMPREF1058_RS07360at 253.204 kb on + strand, within HMPREF1058_RS07360at 253.205 kb on - strand, within HMPREF1058_RS07360at 253.213 kb on + strand, within HMPREF1058_RS07360at 253.214 kb on - strand, within HMPREF1058_RS07360at 253.214 kb on - strand, within HMPREF1058_RS07360at 253.277 kb on + strand, within HMPREF1058_RS07360at 253.307 kb on - strand, within HMPREF1058_RS07360at 253.307 kb on - strand, within HMPREF1058_RS07360at 253.308 kb on + strand, within HMPREF1058_RS07360at 253.311 kb on - strand, within HMPREF1058_RS07360at 253.316 kb on + strand, within HMPREF1058_RS07360at 253.384 kb on + strand, within HMPREF1058_RS07360at 253.387 kb on + strand, within HMPREF1058_RS07360at 253.435 kb on + strand, within HMPREF1058_RS07360at 253.436 kb on - strand, within HMPREF1058_RS07360at 253.674 kb on + strandat 253.679 kb on - strandat 253.712 kb on + strandat 253.713 kb on - strandat 253.779 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
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251,149 + HMPREF1058_RS07370 0.34 +0.5
251,155 - HMPREF1058_RS07370 0.34 +0.6
251,157 + HMPREF1058_RS07370 0.34 +0.4
251,158 - HMPREF1058_RS07370 0.34 +0.4
251,216 - HMPREF1058_RS07370 0.39 -1.8
251,217 + HMPREF1058_RS07370 0.39 +0.7
251,218 - HMPREF1058_RS07370 0.39 +0.9
251,228 + HMPREF1058_RS07370 0.40 +0.1
251,244 + HMPREF1058_RS07370 0.42 +0.2
251,244 + HMPREF1058_RS07370 0.42 +0.8
251,299 + HMPREF1058_RS07370 0.46 +1.2
251,299 + HMPREF1058_RS07370 0.46 +0.7
251,300 - HMPREF1058_RS07370 0.46 +0.3
251,301 + HMPREF1058_RS07370 0.47 +0.2
251,338 - HMPREF1058_RS07370 0.50 +1.7
251,338 - HMPREF1058_RS07370 0.50 -0.1
251,404 + HMPREF1058_RS07370 0.55 -0.0
251,446 + HMPREF1058_RS07370 0.59 +1.0
251,447 - HMPREF1058_RS07370 0.59 -0.2
251,447 - HMPREF1058_RS07370 0.59 +0.2
251,454 + HMPREF1058_RS07370 0.60 +0.1
251,455 - HMPREF1058_RS07370 0.60 +0.4
251,466 + HMPREF1058_RS07370 0.61 +1.7
251,543 + HMPREF1058_RS07370 0.67 +0.9
251,544 - HMPREF1058_RS07370 0.67 -0.9
251,544 - HMPREF1058_RS07370 0.67 -0.5
251,546 - HMPREF1058_RS07370 0.68 +0.6
251,618 + HMPREF1058_RS07370 0.74 +0.3
251,619 - HMPREF1058_RS07370 0.74 +0.8
251,799 - HMPREF1058_RS07370 0.89 +0.7
251,799 - HMPREF1058_RS07370 0.89 +0.1
251,801 - HMPREF1058_RS07370 0.90 +0.8
251,841 + +0.3
251,914 - -0.9
251,935 + +0.4
251,935 + +0.7
251,935 + +0.4
251,957 + +0.9
251,986 + -0.1
252,120 - +0.1
252,122 - +0.0
252,122 - +0.4
252,164 + -0.0
252,164 + -0.3
252,164 + +1.8
252,164 + -0.1
252,167 + -2.1
252,168 - +0.4
252,168 - +0.6
252,168 - +0.4
252,169 + -0.1
252,170 - -1.3
252,205 - +0.0
252,214 - HMPREF1058_RS07365 0.10 +0.7
252,217 + HMPREF1058_RS07365 0.11 +0.3
252,244 + HMPREF1058_RS07365 0.15 +0.0
252,340 + HMPREF1058_RS07365 0.30 +0.5
252,341 - HMPREF1058_RS07365 0.30 +0.4
252,341 - HMPREF1058_RS07365 0.30 +0.7
252,415 + HMPREF1058_RS07365 0.41 +0.4
252,642 + HMPREF1058_RS07365 0.76 -1.3
252,662 - HMPREF1058_RS07365 0.79 +0.2
252,712 - HMPREF1058_RS07365 0.87 +0.8
252,780 - +0.3
252,803 - +0.8
252,846 + +0.5
252,892 + HMPREF1058_RS07360 0.10 -0.8
252,912 + HMPREF1058_RS07360 0.12 -0.8
252,916 + HMPREF1058_RS07360 0.13 +0.0
252,917 - HMPREF1058_RS07360 0.13 +2.0
252,966 + HMPREF1058_RS07360 0.18 -0.9
252,967 - HMPREF1058_RS07360 0.18 +0.7
253,001 + HMPREF1058_RS07360 0.22 +0.1
253,001 + HMPREF1058_RS07360 0.22 +0.9
253,002 - HMPREF1058_RS07360 0.22 +0.1
253,002 - HMPREF1058_RS07360 0.22 +0.3
253,004 + HMPREF1058_RS07360 0.22 -0.3
253,004 + HMPREF1058_RS07360 0.22 +0.3
253,005 - HMPREF1058_RS07360 0.22 +0.6
253,152 - HMPREF1058_RS07360 0.38 -0.5
253,202 - HMPREF1058_RS07360 0.44 -0.0
253,204 + HMPREF1058_RS07360 0.44 +0.2
253,205 - HMPREF1058_RS07360 0.44 -0.7
253,213 + HMPREF1058_RS07360 0.45 +0.5
253,214 - HMPREF1058_RS07360 0.45 +0.2
253,214 - HMPREF1058_RS07360 0.45 +1.5
253,277 + HMPREF1058_RS07360 0.52 -1.8
253,307 - HMPREF1058_RS07360 0.55 -1.6
253,307 - HMPREF1058_RS07360 0.55 +0.1
253,308 + HMPREF1058_RS07360 0.55 +0.1
253,311 - HMPREF1058_RS07360 0.55 +0.4
253,316 + HMPREF1058_RS07360 0.56 +0.2
253,384 + HMPREF1058_RS07360 0.63 -0.5
253,387 + HMPREF1058_RS07360 0.64 +0.4
253,435 + HMPREF1058_RS07360 0.69 -0.8
253,436 - HMPREF1058_RS07360 0.69 +0.2
253,674 + -0.7
253,679 - +0.4
253,712 + +0.1
253,713 - +0.7
253,779 + +1.8

Or see this region's nucleotide sequence