Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06270 and HMPREF1058_RS06265 are separated by 142 nucleotides HMPREF1058_RS06265 and HMPREF1058_RS06260 overlap by 4 nucleotides
HMPREF1058_RS06270: HMPREF1058_RS06270 - C69 family dipeptidase, at 520,142 to 521,740
_RS06270
HMPREF1058_RS06265: HMPREF1058_RS06265 - Crp/Fnr family transcriptional regulator, at 521,883 to 522,461
_RS06265
HMPREF1058_RS06260: HMPREF1058_RS06260 - DUF3943 domain-containing protein, at 522,458 to 523,930
_RS06260
Position (kb) 521
522
523 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 520.941 kb on - strand, within HMPREF1058_RS06270 at 521.040 kb on + strand, within HMPREF1058_RS06270 at 521.041 kb on - strand, within HMPREF1058_RS06270 at 521.093 kb on + strand, within HMPREF1058_RS06270 at 521.133 kb on - strand, within HMPREF1058_RS06270 at 521.146 kb on + strand, within HMPREF1058_RS06270 at 521.180 kb on + strand, within HMPREF1058_RS06270 at 521.180 kb on + strand, within HMPREF1058_RS06270 at 521.181 kb on - strand, within HMPREF1058_RS06270 at 521.181 kb on - strand, within HMPREF1058_RS06270 at 521.232 kb on + strand, within HMPREF1058_RS06270 at 521.327 kb on - strand, within HMPREF1058_RS06270 at 521.428 kb on - strand, within HMPREF1058_RS06270 at 521.447 kb on + strand, within HMPREF1058_RS06270 at 521.470 kb on + strand, within HMPREF1058_RS06270 at 521.470 kb on + strand, within HMPREF1058_RS06270 at 521.591 kb on - strand at 521.591 kb on - strand at 521.645 kb on - strand at 521.645 kb on - strand at 521.706 kb on - strand at 521.720 kb on + strand at 521.758 kb on + strand at 521.758 kb on + strand at 521.774 kb on + strand at 521.788 kb on + strand at 521.825 kb on - strand at 521.825 kb on - strand at 521.891 kb on + strand at 521.891 kb on + strand at 521.891 kb on + strand at 521.895 kb on - strand at 521.897 kb on - strand at 521.897 kb on - strand at 521.902 kb on + strand at 521.903 kb on - strand at 521.906 kb on + strand at 521.907 kb on - strand at 521.979 kb on - strand, within HMPREF1058_RS06265 at 522.043 kb on + strand, within HMPREF1058_RS06265 at 522.044 kb on - strand, within HMPREF1058_RS06265 at 522.074 kb on + strand, within HMPREF1058_RS06265 at 522.074 kb on + strand, within HMPREF1058_RS06265 at 522.074 kb on + strand, within HMPREF1058_RS06265 at 522.102 kb on - strand, within HMPREF1058_RS06265 at 522.197 kb on - strand, within HMPREF1058_RS06265 at 522.342 kb on + strand, within HMPREF1058_RS06265 at 522.345 kb on - strand, within HMPREF1058_RS06265 at 522.396 kb on + strand, within HMPREF1058_RS06265 at 522.397 kb on - strand, within HMPREF1058_RS06265 at 522.409 kb on + strand at 522.413 kb on - strand at 522.469 kb on - strand at 522.501 kb on + strand at 522.525 kb on + strand at 522.526 kb on - strand at 522.547 kb on - strand at 522.582 kb on - strand at 522.620 kb on + strand, within HMPREF1058_RS06260 at 522.799 kb on - strand, within HMPREF1058_RS06260 at 522.813 kb on - strand, within HMPREF1058_RS06260 at 522.813 kb on - strand, within HMPREF1058_RS06260 at 522.819 kb on + strand, within HMPREF1058_RS06260 at 522.820 kb on - strand, within HMPREF1058_RS06260 at 523.094 kb on - strand, within HMPREF1058_RS06260 at 523.188 kb on - strand, within HMPREF1058_RS06260 at 523.230 kb on + strand, within HMPREF1058_RS06260 at 523.433 kb on + strand, within HMPREF1058_RS06260 at 523.447 kb on + strand, within HMPREF1058_RS06260 at 523.447 kb on + strand, within HMPREF1058_RS06260
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3 remove 520,941 - HMPREF1058_RS06270 0.50 -2.2 521,040 + HMPREF1058_RS06270 0.56 +2.9 521,041 - HMPREF1058_RS06270 0.56 -1.9 521,093 + HMPREF1058_RS06270 0.59 -0.4 521,133 - HMPREF1058_RS06270 0.62 -0.2 521,146 + HMPREF1058_RS06270 0.63 -0.3 521,180 + HMPREF1058_RS06270 0.65 -0.1 521,180 + HMPREF1058_RS06270 0.65 -0.9 521,181 - HMPREF1058_RS06270 0.65 +0.6 521,181 - HMPREF1058_RS06270 0.65 -0.5 521,232 + HMPREF1058_RS06270 0.68 +0.1 521,327 - HMPREF1058_RS06270 0.74 +0.5 521,428 - HMPREF1058_RS06270 0.80 +0.7 521,447 + HMPREF1058_RS06270 0.82 +0.3 521,470 + HMPREF1058_RS06270 0.83 +0.8 521,470 + HMPREF1058_RS06270 0.83 +0.7 521,591 - -0.0 521,591 - -1.2 521,645 - -0.7 521,645 - -0.7 521,706 - -0.2 521,720 + -0.9 521,758 + +0.6 521,758 + -0.5 521,774 + +0.3 521,788 + -2.7 521,825 - +0.3 521,825 - +0.9 521,891 + +0.9 521,891 + -0.1 521,891 + +0.4 521,895 - +1.6 521,897 - -1.0 521,897 - +0.1 521,902 + +0.7 521,903 - +0.6 521,906 + +1.5 521,907 - +1.2 521,979 - HMPREF1058_RS06265 0.17 -0.9 522,043 + HMPREF1058_RS06265 0.28 +1.2 522,044 - HMPREF1058_RS06265 0.28 +0.3 522,074 + HMPREF1058_RS06265 0.33 +0.6 522,074 + HMPREF1058_RS06265 0.33 +0.2 522,074 + HMPREF1058_RS06265 0.33 -0.0 522,102 - HMPREF1058_RS06265 0.38 +1.0 522,197 - HMPREF1058_RS06265 0.54 -0.2 522,342 + HMPREF1058_RS06265 0.79 +0.5 522,345 - HMPREF1058_RS06265 0.80 +0.8 522,396 + HMPREF1058_RS06265 0.89 +0.9 522,397 - HMPREF1058_RS06265 0.89 +0.9 522,409 + +0.7 522,413 - -0.1 522,469 - +1.7 522,501 + -0.9 522,525 + +0.8 522,526 - +1.0 522,547 - +0.6 522,582 - +0.7 522,620 + HMPREF1058_RS06260 0.11 +1.1 522,799 - HMPREF1058_RS06260 0.23 -1.0 522,813 - HMPREF1058_RS06260 0.24 +0.1 522,813 - HMPREF1058_RS06260 0.24 +0.7 522,819 + HMPREF1058_RS06260 0.25 -0.7 522,820 - HMPREF1058_RS06260 0.25 +0.3 523,094 - HMPREF1058_RS06260 0.43 +0.1 523,188 - HMPREF1058_RS06260 0.50 +0.3 523,230 + HMPREF1058_RS06260 0.52 +0.2 523,433 + HMPREF1058_RS06260 0.66 -0.5 523,447 + HMPREF1058_RS06260 0.67 +0.6 523,447 + HMPREF1058_RS06260 0.67 -0.7
Or see this region's nucleotide sequence