Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS05950

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS05955 and HMPREF1058_RS05950 overlap by 4 nucleotidesHMPREF1058_RS05950 and HMPREF1058_RS05945 overlap by 4 nucleotides HMPREF1058_RS05955: HMPREF1058_RS05955 - hypothetical protein, at 42,111 to 43,313 _RS05955 HMPREF1058_RS05950: HMPREF1058_RS05950 - ATP-binding cassette domain-containing protein, at 43,310 to 43,954 _RS05950 HMPREF1058_RS05945: HMPREF1058_RS05945 - DUF4836 family protein, at 43,951 to 45,483 _RS05945 Position (kb) 43 44Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 42.371 kb on - strand, within HMPREF1058_RS05955at 42.371 kb on - strand, within HMPREF1058_RS05955at 42.376 kb on - strand, within HMPREF1058_RS05955at 42.424 kb on + strand, within HMPREF1058_RS05955at 42.443 kb on + strand, within HMPREF1058_RS05955at 42.443 kb on + strand, within HMPREF1058_RS05955at 42.475 kb on - strand, within HMPREF1058_RS05955at 42.762 kb on - strand, within HMPREF1058_RS05955at 42.762 kb on - strand, within HMPREF1058_RS05955at 42.765 kb on + strand, within HMPREF1058_RS05955at 42.765 kb on + strand, within HMPREF1058_RS05955at 42.765 kb on + strand, within HMPREF1058_RS05955at 42.766 kb on - strand, within HMPREF1058_RS05955at 42.776 kb on + strand, within HMPREF1058_RS05955at 42.853 kb on + strand, within HMPREF1058_RS05955at 42.962 kb on + strand, within HMPREF1058_RS05955at 43.141 kb on - strand, within HMPREF1058_RS05955at 43.148 kb on - strand, within HMPREF1058_RS05955at 43.314 kb on - strandat 43.332 kb on + strandat 43.417 kb on + strand, within HMPREF1058_RS05950at 43.450 kb on + strand, within HMPREF1058_RS05950at 43.450 kb on + strand, within HMPREF1058_RS05950at 43.468 kb on + strand, within HMPREF1058_RS05950at 43.539 kb on - strand, within HMPREF1058_RS05950at 43.547 kb on - strand, within HMPREF1058_RS05950at 43.606 kb on + strand, within HMPREF1058_RS05950at 43.687 kb on + strand, within HMPREF1058_RS05950at 43.688 kb on - strand, within HMPREF1058_RS05950at 43.766 kb on - strand, within HMPREF1058_RS05950at 43.773 kb on + strand, within HMPREF1058_RS05950at 43.793 kb on + strand, within HMPREF1058_RS05950at 43.793 kb on + strand, within HMPREF1058_RS05950at 43.793 kb on + strand, within HMPREF1058_RS05950at 43.794 kb on - strand, within HMPREF1058_RS05950at 43.798 kb on - strand, within HMPREF1058_RS05950at 43.846 kb on - strand, within HMPREF1058_RS05950at 43.846 kb on - strand, within HMPREF1058_RS05950at 43.892 kb on + strandat 43.898 kb on - strandat 43.937 kb on + strandat 43.954 kb on + strandat 43.955 kb on - strandat 43.972 kb on + strandat 44.016 kb on + strandat 44.060 kb on + strandat 44.275 kb on - strand, within HMPREF1058_RS05945at 44.322 kb on + strand, within HMPREF1058_RS05945at 44.323 kb on - strand, within HMPREF1058_RS05945at 44.509 kb on + strand, within HMPREF1058_RS05945at 44.563 kb on - strand, within HMPREF1058_RS05945at 44.604 kb on + strand, within HMPREF1058_RS05945at 44.607 kb on + strand, within HMPREF1058_RS05945at 44.628 kb on + strand, within HMPREF1058_RS05945at 44.642 kb on + strand, within HMPREF1058_RS05945at 44.662 kb on - strand, within HMPREF1058_RS05945at 44.697 kb on + strand, within HMPREF1058_RS05945at 44.698 kb on - strand, within HMPREF1058_RS05945at 44.698 kb on - strand, within HMPREF1058_RS05945at 44.856 kb on + strand, within HMPREF1058_RS05945at 44.856 kb on + strand, within HMPREF1058_RS05945at 44.856 kb on + strand, within HMPREF1058_RS05945at 44.857 kb on - strand, within HMPREF1058_RS05945at 44.917 kb on + strand, within HMPREF1058_RS05945

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
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42,371 - HMPREF1058_RS05955 0.22 -2.1
42,371 - HMPREF1058_RS05955 0.22 +0.3
42,376 - HMPREF1058_RS05955 0.22 +0.3
42,424 + HMPREF1058_RS05955 0.26 +0.6
42,443 + HMPREF1058_RS05955 0.28 +0.3
42,443 + HMPREF1058_RS05955 0.28 +0.5
42,475 - HMPREF1058_RS05955 0.30 +0.8
42,762 - HMPREF1058_RS05955 0.54 +1.1
42,762 - HMPREF1058_RS05955 0.54 -0.3
42,765 + HMPREF1058_RS05955 0.54 +1.9
42,765 + HMPREF1058_RS05955 0.54 +0.2
42,765 + HMPREF1058_RS05955 0.54 +1.1
42,766 - HMPREF1058_RS05955 0.54 +0.2
42,776 + HMPREF1058_RS05955 0.55 +0.0
42,853 + HMPREF1058_RS05955 0.62 -0.4
42,962 + HMPREF1058_RS05955 0.71 +0.9
43,141 - HMPREF1058_RS05955 0.86 +0.5
43,148 - HMPREF1058_RS05955 0.86 +1.1
43,314 - +0.8
43,332 + +0.9
43,417 + HMPREF1058_RS05950 0.17 +0.7
43,450 + HMPREF1058_RS05950 0.22 -0.9
43,450 + HMPREF1058_RS05950 0.22 +0.6
43,468 + HMPREF1058_RS05950 0.24 +2.4
43,539 - HMPREF1058_RS05950 0.36 +0.4
43,547 - HMPREF1058_RS05950 0.37 -0.8
43,606 + HMPREF1058_RS05950 0.46 +2.2
43,687 + HMPREF1058_RS05950 0.58 +0.8
43,688 - HMPREF1058_RS05950 0.59 +0.5
43,766 - HMPREF1058_RS05950 0.71 +2.2
43,773 + HMPREF1058_RS05950 0.72 -0.1
43,793 + HMPREF1058_RS05950 0.75 +0.2
43,793 + HMPREF1058_RS05950 0.75 -1.6
43,793 + HMPREF1058_RS05950 0.75 -2.4
43,794 - HMPREF1058_RS05950 0.75 +1.1
43,798 - HMPREF1058_RS05950 0.76 -1.4
43,846 - HMPREF1058_RS05950 0.83 -0.7
43,846 - HMPREF1058_RS05950 0.83 -0.1
43,892 + +0.1
43,898 - -0.6
43,937 + -0.8
43,954 + +0.5
43,955 - +0.9
43,972 + -0.4
44,016 + -0.4
44,060 + +0.8
44,275 - HMPREF1058_RS05945 0.21 -0.6
44,322 + HMPREF1058_RS05945 0.24 +0.7
44,323 - HMPREF1058_RS05945 0.24 +0.4
44,509 + HMPREF1058_RS05945 0.36 +1.9
44,563 - HMPREF1058_RS05945 0.40 -1.3
44,604 + HMPREF1058_RS05945 0.43 +0.5
44,607 + HMPREF1058_RS05945 0.43 +0.7
44,628 + HMPREF1058_RS05945 0.44 -0.2
44,642 + HMPREF1058_RS05945 0.45 +0.9
44,662 - HMPREF1058_RS05945 0.46 -0.8
44,697 + HMPREF1058_RS05945 0.49 +0.5
44,698 - HMPREF1058_RS05945 0.49 +0.3
44,698 - HMPREF1058_RS05945 0.49 +0.5
44,856 + HMPREF1058_RS05945 0.59 -1.0
44,856 + HMPREF1058_RS05945 0.59 -3.6
44,856 + HMPREF1058_RS05945 0.59 +0.2
44,857 - HMPREF1058_RS05945 0.59 +0.6
44,917 + HMPREF1058_RS05945 0.63 -0.7

Or see this region's nucleotide sequence