Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS0119835 and HMPREF1058_RS05695 are separated by 3 nucleotides HMPREF1058_RS05695 and HMPREF1058_RS05690 are separated by 142 nucleotides HMPREF1058_RS05690 and HMPREF1058_RS20935 are separated by 374 nucleotides
HMPREF1058_RS0119835: HMPREF1058_RS0119835 - type II toxin-antitoxin system HipA family toxin, at 102,132 to 103,395
_RS0119835
HMPREF1058_RS05695: HMPREF1058_RS05695 - helix-turn-helix domain-containing protein, at 103,399 to 103,719
_RS05695
HMPREF1058_RS05690: HMPREF1058_RS05690 - hypothetical protein, at 103,862 to 104,137
_RS05690
HMPREF1058_RS20935: HMPREF1058_RS20935 - helix-turn-helix domain-containing protein, at 104,512 to 105,448
_RS20935
Position (kb) 103
104 Strain fitness (log2 ratio) -2
-1
0
1
2 at 102.511 kb on - strand, within HMPREF1058_RS0119835 at 102.553 kb on + strand, within HMPREF1058_RS0119835 at 102.566 kb on + strand, within HMPREF1058_RS0119835 at 102.588 kb on - strand, within HMPREF1058_RS0119835 at 102.664 kb on - strand, within HMPREF1058_RS0119835 at 102.664 kb on - strand, within HMPREF1058_RS0119835 at 102.714 kb on + strand, within HMPREF1058_RS0119835 at 102.715 kb on - strand, within HMPREF1058_RS0119835 at 102.801 kb on - strand, within HMPREF1058_RS0119835 at 102.801 kb on - strand, within HMPREF1058_RS0119835 at 102.803 kb on - strand, within HMPREF1058_RS0119835 at 102.998 kb on + strand, within HMPREF1058_RS0119835 at 103.191 kb on + strand, within HMPREF1058_RS0119835 at 103.211 kb on + strand, within HMPREF1058_RS0119835 at 103.230 kb on + strand, within HMPREF1058_RS0119835 at 103.330 kb on + strand at 103.378 kb on + strand at 103.378 kb on + strand at 103.378 kb on + strand at 103.378 kb on + strand at 103.378 kb on + strand at 103.379 kb on - strand at 103.379 kb on - strand at 103.379 kb on - strand at 103.379 kb on - strand at 103.379 kb on - strand at 103.379 kb on - strand at 103.379 kb on - strand at 103.379 kb on - strand at 103.379 kb on - strand at 103.379 kb on - strand at 103.382 kb on + strand at 103.383 kb on - strand at 103.383 kb on - strand at 103.384 kb on + strand at 103.505 kb on - strand, within HMPREF1058_RS05695 at 103.512 kb on - strand, within HMPREF1058_RS05695 at 103.645 kb on - strand, within HMPREF1058_RS05695 at 103.707 kb on + strand at 103.733 kb on - strand at 103.737 kb on + strand at 103.762 kb on - strand at 103.765 kb on + strand at 103.807 kb on - strand at 103.810 kb on - strand at 103.822 kb on + strand at 103.859 kb on - strand at 103.860 kb on - strand at 103.903 kb on + strand, within HMPREF1058_RS05690 at 103.903 kb on + strand, within HMPREF1058_RS05690 at 103.964 kb on - strand, within HMPREF1058_RS05690 at 103.987 kb on + strand, within HMPREF1058_RS05690 at 104.156 kb on + strand at 104.204 kb on - strand at 104.447 kb on + strand at 104.471 kb on + strand at 104.471 kb on + strand at 104.474 kb on - strand at 104.670 kb on - strand, within HMPREF1058_RS20935 at 104.683 kb on + strand, within HMPREF1058_RS20935 at 104.708 kb on + strand, within HMPREF1058_RS20935
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3 remove 102,511 - HMPREF1058_RS0119835 0.30 -0.1 102,553 + HMPREF1058_RS0119835 0.33 -0.1 102,566 + HMPREF1058_RS0119835 0.34 -0.4 102,588 - HMPREF1058_RS0119835 0.36 -0.7 102,664 - HMPREF1058_RS0119835 0.42 +0.9 102,664 - HMPREF1058_RS0119835 0.42 -0.2 102,714 + HMPREF1058_RS0119835 0.46 +0.5 102,715 - HMPREF1058_RS0119835 0.46 -0.1 102,801 - HMPREF1058_RS0119835 0.53 +0.3 102,801 - HMPREF1058_RS0119835 0.53 +1.9 102,803 - HMPREF1058_RS0119835 0.53 -0.2 102,998 + HMPREF1058_RS0119835 0.69 -0.1 103,191 + HMPREF1058_RS0119835 0.84 +0.2 103,211 + HMPREF1058_RS0119835 0.85 -0.0 103,230 + HMPREF1058_RS0119835 0.87 +0.6 103,330 + +0.5 103,378 + +0.7 103,378 + -2.4 103,378 + +0.2 103,378 + -0.8 103,378 + -0.3 103,379 - -1.8 103,379 - -0.2 103,379 - +0.2 103,379 - -0.3 103,379 - +0.4 103,379 - -0.3 103,379 - +0.3 103,379 - -0.0 103,379 - +0.1 103,379 - +1.2 103,382 + +0.1 103,383 - +0.1 103,383 - +0.2 103,384 + +1.8 103,505 - HMPREF1058_RS05695 0.33 +0.8 103,512 - HMPREF1058_RS05695 0.35 +1.6 103,645 - HMPREF1058_RS05695 0.77 +0.4 103,707 + -0.3 103,733 - +1.2 103,737 + -0.6 103,762 - -0.2 103,765 + +1.6 103,807 - -0.7 103,810 - -0.4 103,822 + -0.2 103,859 - +1.1 103,860 - +0.4 103,903 + HMPREF1058_RS05690 0.15 -1.4 103,903 + HMPREF1058_RS05690 0.15 +0.8 103,964 - HMPREF1058_RS05690 0.37 -0.1 103,987 + HMPREF1058_RS05690 0.45 +0.1 104,156 + +0.9 104,204 - +0.7 104,447 + -1.1 104,471 + -0.8 104,471 + +0.2 104,474 - -1.0 104,670 - HMPREF1058_RS20935 0.17 +0.9 104,683 + HMPREF1058_RS20935 0.18 +0.2 104,708 + HMPREF1058_RS20935 0.21 -1.8
Or see this region's nucleotide sequence