Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05220 and HMPREF1058_RS05215 are separated by 393 nucleotides HMPREF1058_RS05215 and HMPREF1058_RS05210 are separated by 16 nucleotides HMPREF1058_RS05210 and HMPREF1058_RS05205 are separated by 42 nucleotides
HMPREF1058_RS05220: HMPREF1058_RS05220 - Hsp20/alpha crystallin family protein, at 214,102 to 214,539
_RS05220
HMPREF1058_RS05215: HMPREF1058_RS05215 - GtrA family protein, at 214,933 to 215,322
_RS05215
HMPREF1058_RS05210: HMPREF1058_RS05210 - SDR family oxidoreductase, at 215,339 to 216,214
_RS05210
HMPREF1058_RS05205: HMPREF1058_RS05205 - GNAT family N-acetyltransferase, at 216,257 to 217,198
_RS05205
Position (kb) 214
215
216 Strain fitness (log2 ratio) -2
-1
0
1
2 at 214.006 kb on - strand at 214.008 kb on - strand at 214.008 kb on - strand at 214.029 kb on - strand at 214.070 kb on - strand at 214.097 kb on + strand at 214.120 kb on + strand at 214.209 kb on + strand, within HMPREF1058_RS05220 at 214.241 kb on + strand, within HMPREF1058_RS05220 at 214.367 kb on - strand, within HMPREF1058_RS05220 at 214.558 kb on + strand at 214.576 kb on - strand at 214.580 kb on + strand at 214.580 kb on + strand at 214.587 kb on - strand at 214.612 kb on - strand at 214.613 kb on + strand at 214.613 kb on + strand at 214.629 kb on - strand at 214.629 kb on - strand at 214.739 kb on - strand at 214.786 kb on + strand at 214.857 kb on + strand at 214.857 kb on + strand at 214.858 kb on - strand at 214.858 kb on - strand at 214.946 kb on + strand at 214.970 kb on + strand at 214.970 kb on + strand at 214.979 kb on + strand, within HMPREF1058_RS05215 at 214.984 kb on + strand, within HMPREF1058_RS05215 at 214.989 kb on + strand, within HMPREF1058_RS05215 at 215.023 kb on + strand, within HMPREF1058_RS05215 at 215.044 kb on + strand, within HMPREF1058_RS05215 at 215.046 kb on + strand, within HMPREF1058_RS05215 at 215.047 kb on - strand, within HMPREF1058_RS05215 at 215.048 kb on + strand, within HMPREF1058_RS05215 at 215.049 kb on - strand, within HMPREF1058_RS05215 at 215.049 kb on - strand, within HMPREF1058_RS05215 at 215.059 kb on - strand, within HMPREF1058_RS05215 at 215.068 kb on + strand, within HMPREF1058_RS05215 at 215.156 kb on + strand, within HMPREF1058_RS05215 at 215.157 kb on - strand, within HMPREF1058_RS05215 at 215.157 kb on - strand, within HMPREF1058_RS05215 at 215.169 kb on + strand, within HMPREF1058_RS05215 at 215.195 kb on + strand, within HMPREF1058_RS05215 at 215.195 kb on + strand, within HMPREF1058_RS05215 at 215.222 kb on + strand, within HMPREF1058_RS05215 at 215.222 kb on + strand, within HMPREF1058_RS05215 at 215.259 kb on + strand, within HMPREF1058_RS05215 at 215.268 kb on - strand, within HMPREF1058_RS05215 at 215.305 kb on - strand at 215.352 kb on - strand at 215.375 kb on + strand at 215.559 kb on - strand, within HMPREF1058_RS05210 at 215.598 kb on + strand, within HMPREF1058_RS05210 at 215.832 kb on + strand, within HMPREF1058_RS05210 at 215.876 kb on - strand, within HMPREF1058_RS05210 at 215.951 kb on + strand, within HMPREF1058_RS05210 at 216.235 kb on + strand at 216.249 kb on - strand at 216.264 kb on + strand at 216.315 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3 remove 214,006 - +1.0 214,008 - +0.7 214,008 - -1.5 214,029 - +1.7 214,070 - +0.8 214,097 + +1.1 214,120 + +0.1 214,209 + HMPREF1058_RS05220 0.24 -1.0 214,241 + HMPREF1058_RS05220 0.32 -0.2 214,367 - HMPREF1058_RS05220 0.61 -0.3 214,558 + -1.2 214,576 - +0.5 214,580 + -0.1 214,580 + -1.2 214,587 - -0.9 214,612 - +2.5 214,613 + -1.3 214,613 + -0.9 214,629 - -0.7 214,629 - -0.3 214,739 - +0.4 214,786 + -0.0 214,857 + -0.6 214,857 + -0.4 214,858 - -2.3 214,858 - +1.3 214,946 + +0.1 214,970 + +0.7 214,970 + -0.5 214,979 + HMPREF1058_RS05215 0.12 +0.9 214,984 + HMPREF1058_RS05215 0.13 -0.3 214,989 + HMPREF1058_RS05215 0.14 +0.1 215,023 + HMPREF1058_RS05215 0.23 +0.6 215,044 + HMPREF1058_RS05215 0.28 -0.1 215,046 + HMPREF1058_RS05215 0.29 +1.8 215,047 - HMPREF1058_RS05215 0.29 +0.8 215,048 + HMPREF1058_RS05215 0.29 +0.9 215,049 - HMPREF1058_RS05215 0.30 +0.2 215,049 - HMPREF1058_RS05215 0.30 -1.0 215,059 - HMPREF1058_RS05215 0.32 +1.5 215,068 + HMPREF1058_RS05215 0.35 +0.2 215,156 + HMPREF1058_RS05215 0.57 -0.5 215,157 - HMPREF1058_RS05215 0.57 -0.0 215,157 - HMPREF1058_RS05215 0.57 -0.0 215,169 + HMPREF1058_RS05215 0.61 +0.1 215,195 + HMPREF1058_RS05215 0.67 +0.5 215,195 + HMPREF1058_RS05215 0.67 -0.9 215,222 + HMPREF1058_RS05215 0.74 +1.7 215,222 + HMPREF1058_RS05215 0.74 -0.0 215,259 + HMPREF1058_RS05215 0.84 +0.7 215,268 - HMPREF1058_RS05215 0.86 +0.3 215,305 - +0.3 215,352 - +1.0 215,375 + -1.4 215,559 - HMPREF1058_RS05210 0.25 +0.2 215,598 + HMPREF1058_RS05210 0.30 -0.9 215,832 + HMPREF1058_RS05210 0.56 -0.6 215,876 - HMPREF1058_RS05210 0.61 -1.1 215,951 + HMPREF1058_RS05210 0.70 +0.1 216,235 + +1.4 216,249 - -1.9 216,264 + +0.1 216,315 - +0.1
Or see this region's nucleotide sequence