Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS05200

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS05205 and HMPREF1058_RS05200 are separated by 190 nucleotidesHMPREF1058_RS05200 and HMPREF1058_RS21005 are separated by 97 nucleotidesHMPREF1058_RS21005 and HMPREF1058_RS21010 are separated by 5 nucleotidesHMPREF1058_RS21010 and HMPREF1058_RS05195 overlap by 51 nucleotides HMPREF1058_RS05205: HMPREF1058_RS05205 - GNAT family N-acetyltransferase, at 216,257 to 217,198 _RS05205 HMPREF1058_RS05200: HMPREF1058_RS05200 - MaoC family dehydratase, at 217,389 to 217,853 _RS05200 HMPREF1058_RS21005: HMPREF1058_RS21005 - nitrous oxide-stimulated promoter family protein, at 217,951 to 218,244 _RS21005 HMPREF1058_RS21010: HMPREF1058_RS21010 - MGMT family protein, at 218,250 to 218,603 _RS21010 HMPREF1058_RS05195: HMPREF1058_RS05195 - hypothetical protein, at 218,553 to 219,026 _RS05195 Position (kb) 217 218Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 216.406 kb on + strand, within HMPREF1058_RS05205at 216.407 kb on - strand, within HMPREF1058_RS05205at 216.407 kb on - strand, within HMPREF1058_RS05205at 216.407 kb on - strand, within HMPREF1058_RS05205at 216.412 kb on - strand, within HMPREF1058_RS05205at 216.480 kb on + strand, within HMPREF1058_RS05205at 216.532 kb on - strand, within HMPREF1058_RS05205at 216.556 kb on - strand, within HMPREF1058_RS05205at 216.584 kb on + strand, within HMPREF1058_RS05205at 216.584 kb on + strand, within HMPREF1058_RS05205at 216.585 kb on - strand, within HMPREF1058_RS05205at 216.676 kb on - strand, within HMPREF1058_RS05205at 216.760 kb on - strand, within HMPREF1058_RS05205at 216.826 kb on - strand, within HMPREF1058_RS05205at 216.830 kb on - strand, within HMPREF1058_RS05205at 216.859 kb on + strand, within HMPREF1058_RS05205at 216.860 kb on - strand, within HMPREF1058_RS05205at 216.889 kb on + strand, within HMPREF1058_RS05205at 216.890 kb on - strand, within HMPREF1058_RS05205at 216.892 kb on - strand, within HMPREF1058_RS05205at 216.892 kb on - strand, within HMPREF1058_RS05205at 216.940 kb on - strand, within HMPREF1058_RS05205at 216.979 kb on + strand, within HMPREF1058_RS05205at 216.980 kb on - strand, within HMPREF1058_RS05205at 216.980 kb on - strand, within HMPREF1058_RS05205at 216.980 kb on - strand, within HMPREF1058_RS05205at 217.026 kb on + strand, within HMPREF1058_RS05205at 217.191 kb on + strandat 217.230 kb on - strandat 217.230 kb on - strandat 217.235 kb on - strandat 217.280 kb on + strandat 217.281 kb on - strandat 217.282 kb on + strandat 217.332 kb on + strandat 217.358 kb on + strandat 217.579 kb on + strand, within HMPREF1058_RS05200at 217.580 kb on - strand, within HMPREF1058_RS05200at 217.629 kb on - strand, within HMPREF1058_RS05200at 217.629 kb on - strand, within HMPREF1058_RS05200at 217.662 kb on + strand, within HMPREF1058_RS05200at 217.663 kb on - strand, within HMPREF1058_RS05200at 217.663 kb on - strand, within HMPREF1058_RS05200at 217.663 kb on - strand, within HMPREF1058_RS05200at 217.670 kb on + strand, within HMPREF1058_RS05200at 217.670 kb on + strand, within HMPREF1058_RS05200at 217.671 kb on - strand, within HMPREF1058_RS05200at 217.674 kb on - strand, within HMPREF1058_RS05200at 217.710 kb on + strand, within HMPREF1058_RS05200at 217.780 kb on + strand, within HMPREF1058_RS05200at 217.835 kb on + strandat 217.848 kb on - strandat 217.874 kb on + strandat 217.877 kb on - strandat 217.881 kb on + strandat 217.882 kb on - strandat 218.063 kb on - strand, within HMPREF1058_RS21005at 218.063 kb on - strand, within HMPREF1058_RS21005at 218.088 kb on + strand, within HMPREF1058_RS21005at 218.129 kb on + strandat 218.137 kb on + strand, within HMPREF1058_RS21005at 218.138 kb on - strand, within HMPREF1058_RS21005at 218.140 kb on - strand, within HMPREF1058_RS21005at 218.171 kb on + strand, within HMPREF1058_RS21005at 218.278 kb on + strandat 218.288 kb on + strand, within HMPREF1058_RS21010at 218.342 kb on + strand, within HMPREF1058_RS21010at 218.345 kb on - strand, within HMPREF1058_RS21010at 218.349 kb on - strand, within HMPREF1058_RS21010at 218.429 kb on - strand, within HMPREF1058_RS21010at 218.429 kb on - strand, within HMPREF1058_RS21010at 218.536 kb on + strand, within HMPREF1058_RS21010at 218.570 kb on - strandat 218.570 kb on - strandat 218.573 kb on + strandat 218.574 kb on - strandat 218.574 kb on - strandat 218.574 kb on - strandat 218.638 kb on - strand, within HMPREF1058_RS05195at 218.647 kb on + strand, within HMPREF1058_RS05195at 218.672 kb on + strand, within HMPREF1058_RS05195at 218.672 kb on + strand, within HMPREF1058_RS05195at 218.673 kb on - strand, within HMPREF1058_RS05195at 218.702 kb on - strand, within HMPREF1058_RS05195at 218.705 kb on + strand, within HMPREF1058_RS05195at 218.706 kb on - strand, within HMPREF1058_RS05195at 218.757 kb on - strand, within HMPREF1058_RS05195at 218.759 kb on + strand, within HMPREF1058_RS05195at 218.799 kb on - strand, within HMPREF1058_RS05195at 218.799 kb on - strand, within HMPREF1058_RS05195at 218.807 kb on - strand, within HMPREF1058_RS05195at 218.827 kb on + strand, within HMPREF1058_RS05195at 218.828 kb on - strand, within HMPREF1058_RS05195at 218.829 kb on + strand, within HMPREF1058_RS05195at 218.829 kb on + strand, within HMPREF1058_RS05195at 218.829 kb on + strand, within HMPREF1058_RS05195at 218.829 kb on + strand, within HMPREF1058_RS05195at 218.829 kb on + strand, within HMPREF1058_RS05195at 218.830 kb on - strand, within HMPREF1058_RS05195at 218.830 kb on - strand, within HMPREF1058_RS05195

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
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216,406 + HMPREF1058_RS05205 0.16 -1.5
216,407 - HMPREF1058_RS05205 0.16 +0.4
216,407 - HMPREF1058_RS05205 0.16 -0.2
216,407 - HMPREF1058_RS05205 0.16 -1.2
216,412 - HMPREF1058_RS05205 0.16 -0.4
216,480 + HMPREF1058_RS05205 0.24 +0.3
216,532 - HMPREF1058_RS05205 0.29 -3.4
216,556 - HMPREF1058_RS05205 0.32 +0.3
216,584 + HMPREF1058_RS05205 0.35 -0.3
216,584 + HMPREF1058_RS05205 0.35 -0.5
216,585 - HMPREF1058_RS05205 0.35 +0.9
216,676 - HMPREF1058_RS05205 0.44 +1.5
216,760 - HMPREF1058_RS05205 0.53 +0.6
216,826 - HMPREF1058_RS05205 0.60 -1.3
216,830 - HMPREF1058_RS05205 0.61 -0.3
216,859 + HMPREF1058_RS05205 0.64 +0.1
216,860 - HMPREF1058_RS05205 0.64 -0.0
216,889 + HMPREF1058_RS05205 0.67 -0.1
216,890 - HMPREF1058_RS05205 0.67 -0.1
216,892 - HMPREF1058_RS05205 0.67 -0.0
216,892 - HMPREF1058_RS05205 0.67 +0.1
216,940 - HMPREF1058_RS05205 0.73 +0.3
216,979 + HMPREF1058_RS05205 0.77 +0.1
216,980 - HMPREF1058_RS05205 0.77 -0.4
216,980 - HMPREF1058_RS05205 0.77 -0.0
216,980 - HMPREF1058_RS05205 0.77 +0.0
217,026 + HMPREF1058_RS05205 0.82 -0.4
217,191 + +0.3
217,230 - +0.4
217,230 - -0.3
217,235 - +0.8
217,280 + -0.7
217,281 - -0.2
217,282 + +1.6
217,332 + +0.6
217,358 + -0.3
217,579 + HMPREF1058_RS05200 0.41 +1.1
217,580 - HMPREF1058_RS05200 0.41 +0.8
217,629 - HMPREF1058_RS05200 0.52 +1.1
217,629 - HMPREF1058_RS05200 0.52 +2.6
217,662 + HMPREF1058_RS05200 0.59 -0.4
217,663 - HMPREF1058_RS05200 0.59 +1.2
217,663 - HMPREF1058_RS05200 0.59 +1.1
217,663 - HMPREF1058_RS05200 0.59 +0.3
217,670 + HMPREF1058_RS05200 0.60 +2.0
217,670 + HMPREF1058_RS05200 0.60 -0.0
217,671 - HMPREF1058_RS05200 0.61 -0.6
217,674 - HMPREF1058_RS05200 0.61 +0.6
217,710 + HMPREF1058_RS05200 0.69 +0.5
217,780 + HMPREF1058_RS05200 0.84 +1.8
217,835 + +1.6
217,848 - +0.9
217,874 + +0.1
217,877 - -1.4
217,881 + +1.5
217,882 - +0.3
218,063 - HMPREF1058_RS21005 0.38 -4.1
218,063 - HMPREF1058_RS21005 0.38 -1.9
218,088 + HMPREF1058_RS21005 0.47 +0.5
218,129 + -1.4
218,137 + HMPREF1058_RS21005 0.63 -0.5
218,138 - HMPREF1058_RS21005 0.64 -1.5
218,140 - HMPREF1058_RS21005 0.64 -1.2
218,171 + HMPREF1058_RS21005 0.75 -0.3
218,278 + +0.4
218,288 + HMPREF1058_RS21010 0.11 -1.0
218,342 + HMPREF1058_RS21010 0.26 +0.1
218,345 - HMPREF1058_RS21010 0.27 -0.1
218,349 - HMPREF1058_RS21010 0.28 -3.9
218,429 - HMPREF1058_RS21010 0.51 +0.7
218,429 - HMPREF1058_RS21010 0.51 +0.3
218,536 + HMPREF1058_RS21010 0.81 +0.4
218,570 - -1.0
218,570 - +0.5
218,573 + +0.1
218,574 - -0.2
218,574 - -0.6
218,574 - +0.6
218,638 - HMPREF1058_RS05195 0.18 -0.3
218,647 + HMPREF1058_RS05195 0.20 +1.8
218,672 + HMPREF1058_RS05195 0.25 +0.3
218,672 + HMPREF1058_RS05195 0.25 -1.2
218,673 - HMPREF1058_RS05195 0.25 -0.9
218,702 - HMPREF1058_RS05195 0.31 +0.1
218,705 + HMPREF1058_RS05195 0.32 +0.7
218,706 - HMPREF1058_RS05195 0.32 -0.7
218,757 - HMPREF1058_RS05195 0.43 -1.3
218,759 + HMPREF1058_RS05195 0.43 -1.6
218,799 - HMPREF1058_RS05195 0.52 -1.5
218,799 - HMPREF1058_RS05195 0.52 +0.1
218,807 - HMPREF1058_RS05195 0.54 +0.5
218,827 + HMPREF1058_RS05195 0.58 +0.1
218,828 - HMPREF1058_RS05195 0.58 +0.5
218,829 + HMPREF1058_RS05195 0.58 -0.7
218,829 + HMPREF1058_RS05195 0.58 -2.2
218,829 + HMPREF1058_RS05195 0.58 -0.7
218,829 + HMPREF1058_RS05195 0.58 -0.3
218,829 + HMPREF1058_RS05195 0.58 -1.8
218,830 - HMPREF1058_RS05195 0.58 -0.1
218,830 - HMPREF1058_RS05195 0.58 +0.1

Or see this region's nucleotide sequence