Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04955 and HMPREF1058_RS04950 are separated by 15 nucleotides HMPREF1058_RS04950 and HMPREF1058_RS04945 are separated by 142 nucleotides
HMPREF1058_RS04955: HMPREF1058_RS04955 - site-specific integrase, at 284,201 to 285,436
_RS04955
HMPREF1058_RS04950: HMPREF1058_RS04950 - hypothetical protein, at 285,452 to 285,766
_RS04950
HMPREF1058_RS04945: HMPREF1058_RS04945 - hypothetical protein, at 285,909 to 287,006
_RS04945
Position (kb) 285
286 Strain fitness (log2 ratio) -1
0
1 at 284.465 kb on + strand, within HMPREF1058_RS04955 at 284.466 kb on - strand, within HMPREF1058_RS04955 at 284.466 kb on - strand, within HMPREF1058_RS04955 at 284.466 kb on - strand, within HMPREF1058_RS04955 at 284.521 kb on + strand, within HMPREF1058_RS04955 at 284.610 kb on - strand, within HMPREF1058_RS04955 at 284.621 kb on + strand, within HMPREF1058_RS04955 at 285.120 kb on - strand, within HMPREF1058_RS04955 at 285.435 kb on - strand at 285.618 kb on + strand, within HMPREF1058_RS04950 at 285.708 kb on - strand, within HMPREF1058_RS04950 at 285.762 kb on + strand at 285.869 kb on - strand at 285.888 kb on - strand at 285.909 kb on - strand at 286.105 kb on - strand, within HMPREF1058_RS04945 at 286.105 kb on - strand, within HMPREF1058_RS04945 at 286.156 kb on - strand, within HMPREF1058_RS04945 at 286.156 kb on - strand, within HMPREF1058_RS04945 at 286.189 kb on - strand, within HMPREF1058_RS04945 at 286.225 kb on - strand, within HMPREF1058_RS04945 at 286.299 kb on + strand, within HMPREF1058_RS04945 at 286.441 kb on - strand, within HMPREF1058_RS04945 at 286.476 kb on + strand, within HMPREF1058_RS04945 at 286.477 kb on - strand, within HMPREF1058_RS04945 at 286.522 kb on - strand, within HMPREF1058_RS04945 at 286.626 kb on + strand, within HMPREF1058_RS04945 at 286.695 kb on + strand, within HMPREF1058_RS04945 at 286.737 kb on + strand, within HMPREF1058_RS04945
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3 remove 284,465 + HMPREF1058_RS04955 0.21 -0.2 284,466 - HMPREF1058_RS04955 0.21 -0.7 284,466 - HMPREF1058_RS04955 0.21 +0.1 284,466 - HMPREF1058_RS04955 0.21 -1.6 284,521 + HMPREF1058_RS04955 0.26 -0.0 284,610 - HMPREF1058_RS04955 0.33 +0.7 284,621 + HMPREF1058_RS04955 0.34 -1.0 285,120 - HMPREF1058_RS04955 0.74 -0.2 285,435 - -0.6 285,618 + HMPREF1058_RS04950 0.53 +1.7 285,708 - HMPREF1058_RS04950 0.81 -0.3 285,762 + -1.0 285,869 - -0.9 285,888 - +0.5 285,909 - +0.1 286,105 - HMPREF1058_RS04945 0.18 +0.7 286,105 - HMPREF1058_RS04945 0.18 -1.4 286,156 - HMPREF1058_RS04945 0.22 +0.9 286,156 - HMPREF1058_RS04945 0.22 -0.4 286,189 - HMPREF1058_RS04945 0.26 -0.1 286,225 - HMPREF1058_RS04945 0.29 -0.6 286,299 + HMPREF1058_RS04945 0.36 -1.5 286,441 - HMPREF1058_RS04945 0.48 +0.7 286,476 + HMPREF1058_RS04945 0.52 -1.6 286,477 - HMPREF1058_RS04945 0.52 -1.0 286,522 - HMPREF1058_RS04945 0.56 +0.0 286,626 + HMPREF1058_RS04945 0.65 -1.2 286,695 + HMPREF1058_RS04945 0.72 +0.8 286,737 + HMPREF1058_RS04945 0.75 -0.1
Or see this region's nucleotide sequence