Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04750 and HMPREF1058_RS04745 are separated by 134 nucleotides HMPREF1058_RS04745 and HMPREF1058_RS21660 are separated by 411 nucleotides HMPREF1058_RS21660 and HMPREF1058_RS04740 are separated by 196 nucleotides
HMPREF1058_RS04750: HMPREF1058_RS04750 - hypothetical protein, at 323,048 to 323,563
_RS04750
HMPREF1058_RS04745: HMPREF1058_RS04745 - helix-turn-helix domain-containing protein, at 323,698 to 324,462
_RS04745
HMPREF1058_RS21660: HMPREF1058_RS21660 - hypothetical protein, at 324,874 to 325,137
_RS21660
HMPREF1058_RS04740: HMPREF1058_RS04740 - DUF5606 domain-containing protein, at 325,334 to 325,774
_RS04740
Position (kb) 323
324
325 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 322.729 kb on - strand at 322.729 kb on - strand at 322.755 kb on - strand at 322.761 kb on - strand at 322.764 kb on + strand at 322.765 kb on - strand at 322.766 kb on + strand at 322.766 kb on + strand at 322.773 kb on - strand at 322.785 kb on + strand at 322.786 kb on - strand at 322.786 kb on - strand at 322.915 kb on + strand at 322.917 kb on + strand at 322.918 kb on - strand at 322.919 kb on + strand at 322.919 kb on + strand at 322.920 kb on - strand at 322.920 kb on - strand at 322.945 kb on - strand at 323.004 kb on - strand at 323.163 kb on + strand, within HMPREF1058_RS04750 at 323.370 kb on + strand, within HMPREF1058_RS04750 at 323.370 kb on + strand, within HMPREF1058_RS04750 at 323.370 kb on + strand, within HMPREF1058_RS04750 at 323.370 kb on + strand, within HMPREF1058_RS04750 at 323.370 kb on + strand, within HMPREF1058_RS04750 at 323.371 kb on - strand, within HMPREF1058_RS04750 at 323.395 kb on - strand, within HMPREF1058_RS04750 at 323.439 kb on + strand, within HMPREF1058_RS04750 at 323.516 kb on + strand at 323.532 kb on - strand at 323.536 kb on + strand at 323.718 kb on - strand at 323.801 kb on - strand, within HMPREF1058_RS04745 at 324.235 kb on + strand, within HMPREF1058_RS04745 at 324.319 kb on + strand, within HMPREF1058_RS04745 at 324.686 kb on - strand at 324.728 kb on + strand at 324.943 kb on + strand, within HMPREF1058_RS21660 at 324.943 kb on + strand, within HMPREF1058_RS21660 at 324.944 kb on - strand, within HMPREF1058_RS21660 at 324.972 kb on - strand, within HMPREF1058_RS21660 at 325.171 kb on - strand at 325.172 kb on + strand at 325.173 kb on - strand at 325.173 kb on - strand at 325.189 kb on + strand at 325.237 kb on + strand at 325.238 kb on - strand at 325.243 kb on + strand at 325.244 kb on - strand at 325.299 kb on + strand at 325.326 kb on + strand at 325.399 kb on + strand, within HMPREF1058_RS04740 at 325.399 kb on + strand, within HMPREF1058_RS04740 at 325.418 kb on - strand, within HMPREF1058_RS04740 at 325.423 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3 remove 322,729 - +0.4 322,729 - -0.2 322,755 - -0.2 322,761 - -0.7 322,764 + -0.1 322,765 - -0.3 322,766 + +0.9 322,766 + -0.3 322,773 - -2.9 322,785 + +0.1 322,786 - -1.0 322,786 - +0.8 322,915 + +2.0 322,917 + -0.9 322,918 - -0.7 322,919 + +0.6 322,919 + -0.9 322,920 - +0.0 322,920 - +0.6 322,945 - -2.6 323,004 - -0.1 323,163 + HMPREF1058_RS04750 0.22 -0.5 323,370 + HMPREF1058_RS04750 0.62 -0.4 323,370 + HMPREF1058_RS04750 0.62 -1.0 323,370 + HMPREF1058_RS04750 0.62 +0.2 323,370 + HMPREF1058_RS04750 0.62 +0.1 323,370 + HMPREF1058_RS04750 0.62 -1.1 323,371 - HMPREF1058_RS04750 0.63 +0.1 323,395 - HMPREF1058_RS04750 0.67 -2.3 323,439 + HMPREF1058_RS04750 0.76 +0.1 323,516 + +0.2 323,532 - +0.1 323,536 + -0.4 323,718 - +0.7 323,801 - HMPREF1058_RS04745 0.13 +1.0 324,235 + HMPREF1058_RS04745 0.70 +0.7 324,319 + HMPREF1058_RS04745 0.81 +0.1 324,686 - -1.8 324,728 + -0.2 324,943 + HMPREF1058_RS21660 0.26 -0.1 324,943 + HMPREF1058_RS21660 0.26 -0.4 324,944 - HMPREF1058_RS21660 0.27 -1.0 324,972 - HMPREF1058_RS21660 0.37 -1.4 325,171 - +0.2 325,172 + +0.5 325,173 - +1.2 325,173 - +0.2 325,189 + +2.0 325,237 + -0.1 325,238 - -1.3 325,243 + +0.1 325,244 - +1.3 325,299 + +0.0 325,326 + -0.4 325,399 + HMPREF1058_RS04740 0.15 +0.4 325,399 + HMPREF1058_RS04740 0.15 +0.4 325,418 - HMPREF1058_RS04740 0.19 +0.0 325,423 - -0.9
Or see this region's nucleotide sequence