Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04410 and HMPREF1058_RS04405 are separated by 271 nucleotides HMPREF1058_RS04405 and HMPREF1058_RS04400 are separated by 16 nucleotides
HMPREF1058_RS04410: HMPREF1058_RS04410 - porin family protein, at 43,418 to 43,815
_RS04410
HMPREF1058_RS04405: HMPREF1058_RS04405 - flavodoxin FldA, at 44,087 to 44,590
_RS04405
HMPREF1058_RS04400: HMPREF1058_RS04400 - DUF2023 family protein, at 44,607 to 44,951
_RS04400
Position (kb) 43
44 Strain fitness (log2 ratio) -2
-1
0
1
2 at 43.503 kb on + strand, within HMPREF1058_RS04410 at 43.503 kb on + strand, within HMPREF1058_RS04410 at 43.503 kb on + strand, within HMPREF1058_RS04410 at 43.873 kb on + strand at 43.913 kb on - strand at 43.949 kb on + strand at 44.009 kb on - strand at 44.017 kb on + strand at 44.103 kb on + strand at 44.152 kb on - strand, within HMPREF1058_RS04405 at 44.163 kb on + strand, within HMPREF1058_RS04405 at 44.184 kb on + strand, within HMPREF1058_RS04405 at 44.184 kb on + strand at 44.185 kb on - strand, within HMPREF1058_RS04405 at 44.197 kb on + strand, within HMPREF1058_RS04405 at 44.285 kb on + strand, within HMPREF1058_RS04405 at 44.331 kb on + strand, within HMPREF1058_RS04405 at 44.366 kb on + strand, within HMPREF1058_RS04405 at 44.399 kb on - strand, within HMPREF1058_RS04405 at 44.400 kb on + strand, within HMPREF1058_RS04405 at 44.401 kb on - strand, within HMPREF1058_RS04405 at 44.402 kb on + strand, within HMPREF1058_RS04405 at 44.402 kb on + strand, within HMPREF1058_RS04405 at 44.402 kb on + strand, within HMPREF1058_RS04405 at 44.465 kb on + strand, within HMPREF1058_RS04405 at 44.607 kb on - strand at 44.607 kb on - strand at 44.612 kb on - strand at 44.612 kb on - strand at 44.612 kb on - strand at 44.644 kb on + strand, within HMPREF1058_RS04400 at 44.657 kb on + strand, within HMPREF1058_RS04400 at 44.680 kb on + strand, within HMPREF1058_RS04400 at 44.698 kb on - strand, within HMPREF1058_RS04400 at 44.698 kb on - strand, within HMPREF1058_RS04400 at 44.702 kb on + strand, within HMPREF1058_RS04400 at 44.703 kb on - strand, within HMPREF1058_RS04400 at 44.703 kb on - strand, within HMPREF1058_RS04400 at 44.760 kb on + strand, within HMPREF1058_RS04400 at 44.764 kb on + strand, within HMPREF1058_RS04400 at 44.765 kb on - strand, within HMPREF1058_RS04400 at 44.791 kb on + strand, within HMPREF1058_RS04400
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3 remove 43,503 + HMPREF1058_RS04410 0.21 +0.3 43,503 + HMPREF1058_RS04410 0.21 -0.5 43,503 + HMPREF1058_RS04410 0.21 +1.3 43,873 + +0.6 43,913 - -1.2 43,949 + +0.5 44,009 - +0.6 44,017 + -0.7 44,103 + +0.2 44,152 - HMPREF1058_RS04405 0.13 -0.4 44,163 + HMPREF1058_RS04405 0.15 +0.4 44,184 + HMPREF1058_RS04405 0.19 +0.3 44,184 + +1.9 44,185 - HMPREF1058_RS04405 0.19 +0.4 44,197 + HMPREF1058_RS04405 0.22 +0.5 44,285 + HMPREF1058_RS04405 0.39 -0.1 44,331 + HMPREF1058_RS04405 0.48 -0.2 44,366 + HMPREF1058_RS04405 0.55 -0.3 44,399 - HMPREF1058_RS04405 0.62 -1.5 44,400 + HMPREF1058_RS04405 0.62 +0.0 44,401 - HMPREF1058_RS04405 0.62 +0.9 44,402 + HMPREF1058_RS04405 0.62 -0.6 44,402 + HMPREF1058_RS04405 0.62 +2.3 44,402 + HMPREF1058_RS04405 0.62 -0.1 44,465 + HMPREF1058_RS04405 0.75 +0.9 44,607 - +0.6 44,607 - -0.5 44,612 - -0.1 44,612 - -1.7 44,612 - +0.5 44,644 + HMPREF1058_RS04400 0.11 -2.7 44,657 + HMPREF1058_RS04400 0.14 -2.7 44,680 + HMPREF1058_RS04400 0.21 +0.6 44,698 - HMPREF1058_RS04400 0.26 -0.4 44,698 - HMPREF1058_RS04400 0.26 -0.3 44,702 + HMPREF1058_RS04400 0.28 -0.0 44,703 - HMPREF1058_RS04400 0.28 -0.4 44,703 - HMPREF1058_RS04400 0.28 +0.4 44,760 + HMPREF1058_RS04400 0.44 -0.0 44,764 + HMPREF1058_RS04400 0.46 +0.7 44,765 - HMPREF1058_RS04400 0.46 +0.4 44,791 + HMPREF1058_RS04400 0.53 -0.5
Or see this region's nucleotide sequence