Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04345 and HMPREF1058_RS04340 are separated by 713 nucleotides HMPREF1058_RS04340 and HMPREF1058_RS04335 are separated by 244 nucleotides
HMPREF1058_RS04345: HMPREF1058_RS04345 - AAA family ATPase, at 60,599 to 61,633
_RS04345
HMPREF1058_RS04340: HMPREF1058_RS04340 - hypothetical protein, at 62,347 to 63,178
_RS04340
HMPREF1058_RS04335: HMPREF1058_RS04335 - Na(+)-translocating NADH-quinone reductase subunit A, at 63,423 to 64,772
_RS04335
Position (kb) 62
63
64 Strain fitness (log2 ratio) -2
-1
0
1
2 at 61.381 kb on + strand, within HMPREF1058_RS04345 at 61.522 kb on + strand, within HMPREF1058_RS04345 at 61.522 kb on + strand, within HMPREF1058_RS04345 at 61.523 kb on - strand, within HMPREF1058_RS04345 at 61.523 kb on - strand, within HMPREF1058_RS04345 at 61.526 kb on + strand, within HMPREF1058_RS04345 at 61.527 kb on - strand, within HMPREF1058_RS04345 at 61.527 kb on - strand, within HMPREF1058_RS04345 at 61.628 kb on - strand at 61.695 kb on - strand at 61.838 kb on + strand at 61.954 kb on - strand at 61.970 kb on + strand at 61.984 kb on + strand at 61.984 kb on + strand at 61.985 kb on - strand at 62.012 kb on - strand at 62.012 kb on - strand at 62.062 kb on + strand at 62.107 kb on + strand at 62.108 kb on - strand at 62.108 kb on - strand at 62.399 kb on - strand at 62.426 kb on + strand at 62.507 kb on - strand, within HMPREF1058_RS04340 at 62.554 kb on + strand, within HMPREF1058_RS04340 at 62.557 kb on + strand, within HMPREF1058_RS04340 at 62.568 kb on - strand, within HMPREF1058_RS04340 at 62.731 kb on + strand, within HMPREF1058_RS04340 at 62.764 kb on + strand, within HMPREF1058_RS04340 at 62.764 kb on + strand, within HMPREF1058_RS04340 at 62.915 kb on + strand, within HMPREF1058_RS04340 at 63.114 kb on + strand at 63.115 kb on - strand at 63.115 kb on - strand at 63.132 kb on + strand at 63.217 kb on - strand at 63.340 kb on - strand at 63.343 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3 remove 61,381 + HMPREF1058_RS04345 0.76 +0.0 61,522 + HMPREF1058_RS04345 0.89 -0.2 61,522 + HMPREF1058_RS04345 0.89 -0.2 61,523 - HMPREF1058_RS04345 0.89 -0.9 61,523 - HMPREF1058_RS04345 0.89 -2.3 61,526 + HMPREF1058_RS04345 0.90 +0.1 61,527 - HMPREF1058_RS04345 0.90 -2.5 61,527 - HMPREF1058_RS04345 0.90 +1.3 61,628 - +0.6 61,695 - -0.7 61,838 + +0.9 61,954 - -0.0 61,970 + -0.3 61,984 + +0.9 61,984 + -0.2 61,985 - +1.0 62,012 - +0.2 62,012 - -0.9 62,062 + +1.9 62,107 + -0.4 62,108 - -1.8 62,108 - +0.3 62,399 - +0.4 62,426 + +0.0 62,507 - HMPREF1058_RS04340 0.19 -1.0 62,554 + HMPREF1058_RS04340 0.25 +0.1 62,557 + HMPREF1058_RS04340 0.25 +0.7 62,568 - HMPREF1058_RS04340 0.27 -0.7 62,731 + HMPREF1058_RS04340 0.46 +1.0 62,764 + HMPREF1058_RS04340 0.50 +0.4 62,764 + HMPREF1058_RS04340 0.50 +1.1 62,915 + HMPREF1058_RS04340 0.68 +1.3 63,114 + +0.1 63,115 - -0.2 63,115 - -0.3 63,132 + +0.7 63,217 - -0.3 63,340 - -0.4 63,343 - -0.7
Or see this region's nucleotide sequence