Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03950 and HMPREF1058_RS03945 are separated by 100 nucleotides HMPREF1058_RS03945 and HMPREF1058_RS03940 are separated by 8 nucleotides HMPREF1058_RS03940 and HMPREF1058_RS03935 are separated by 61 nucleotides HMPREF1058_RS03935 and HMPREF1058_RS03930 are separated by 58 nucleotides
HMPREF1058_RS03950: HMPREF1058_RS03950 - type I restriction enzyme HsdR N-terminal domain-containing protein, at 152,769 to 153,218
_RS03950
HMPREF1058_RS03945: HMPREF1058_RS03945 - hypothetical protein, at 153,319 to 154,110
_RS03945
HMPREF1058_RS03940: HMPREF1058_RS03940 - Nif3-like dinuclear metal center hexameric protein, at 154,119 to 155,213
_RS03940
HMPREF1058_RS03935: HMPREF1058_RS03935 - hypothetical protein, at 155,275 to 155,553
_RS03935
HMPREF1058_RS03930: HMPREF1058_RS03930 - ABC transporter permease, at 155,612 to 156,409
_RS03930
Position (kb) 154
155
156 Strain fitness (log2 ratio) -2
-1
0
1
2 at 153.205 kb on - strand at 153.216 kb on + strand at 153.222 kb on + strand at 153.223 kb on - strand at 153.301 kb on - strand at 153.301 kb on - strand at 153.316 kb on - strand at 153.317 kb on + strand at 153.318 kb on - strand at 153.320 kb on + strand at 153.321 kb on - strand at 154.215 kb on - strand at 154.215 kb on - strand at 154.232 kb on - strand, within HMPREF1058_RS03940 at 154.257 kb on - strand, within HMPREF1058_RS03940 at 154.286 kb on - strand, within HMPREF1058_RS03940 at 154.286 kb on - strand, within HMPREF1058_RS03940 at 154.309 kb on - strand, within HMPREF1058_RS03940 at 154.404 kb on - strand, within HMPREF1058_RS03940 at 154.618 kb on - strand, within HMPREF1058_RS03940 at 154.730 kb on - strand, within HMPREF1058_RS03940 at 154.730 kb on - strand, within HMPREF1058_RS03940 at 154.730 kb on - strand, within HMPREF1058_RS03940 at 154.734 kb on - strand, within HMPREF1058_RS03940 at 154.738 kb on - strand, within HMPREF1058_RS03940 at 154.774 kb on - strand, within HMPREF1058_RS03940 at 154.843 kb on - strand, within HMPREF1058_RS03940 at 154.849 kb on - strand, within HMPREF1058_RS03940 at 154.998 kb on - strand, within HMPREF1058_RS03940 at 155.011 kb on - strand, within HMPREF1058_RS03940 at 155.042 kb on - strand, within HMPREF1058_RS03940 at 155.277 kb on - strand at 155.285 kb on + strand at 155.307 kb on + strand, within HMPREF1058_RS03935 at 155.419 kb on + strand, within HMPREF1058_RS03935 at 155.428 kb on + strand, within HMPREF1058_RS03935 at 155.443 kb on - strand, within HMPREF1058_RS03935 at 155.452 kb on - strand, within HMPREF1058_RS03935 at 155.454 kb on + strand, within HMPREF1058_RS03935 at 155.455 kb on - strand, within HMPREF1058_RS03935 at 155.480 kb on + strand, within HMPREF1058_RS03935 at 155.485 kb on + strand, within HMPREF1058_RS03935 at 155.486 kb on - strand, within HMPREF1058_RS03935 at 155.486 kb on - strand, within HMPREF1058_RS03935 at 155.488 kb on - strand, within HMPREF1058_RS03935 at 155.529 kb on + strand at 155.531 kb on + strand at 155.532 kb on - strand at 155.561 kb on + strand at 155.578 kb on + strand at 155.583 kb on - strand at 155.613 kb on + strand at 155.729 kb on - strand, within HMPREF1058_RS03930 at 155.798 kb on - strand, within HMPREF1058_RS03930 at 155.965 kb on - strand, within HMPREF1058_RS03930 at 155.965 kb on - strand, within HMPREF1058_RS03930 at 155.973 kb on - strand, within HMPREF1058_RS03930 at 155.998 kb on + strand, within HMPREF1058_RS03930 at 156.013 kb on + strand, within HMPREF1058_RS03930
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3 remove 153,205 - -0.1 153,216 + -0.2 153,222 + +0.6 153,223 - +1.0 153,301 - -2.2 153,301 - -0.0 153,316 - +0.5 153,317 + +0.1 153,318 - +0.1 153,320 + +0.9 153,321 - +0.2 154,215 - +0.3 154,215 - +0.0 154,232 - HMPREF1058_RS03940 0.10 +0.5 154,257 - HMPREF1058_RS03940 0.13 +1.1 154,286 - HMPREF1058_RS03940 0.15 -2.5 154,286 - HMPREF1058_RS03940 0.15 +0.1 154,309 - HMPREF1058_RS03940 0.17 +0.1 154,404 - HMPREF1058_RS03940 0.26 +0.5 154,618 - HMPREF1058_RS03940 0.46 +0.7 154,730 - HMPREF1058_RS03940 0.56 +1.3 154,730 - HMPREF1058_RS03940 0.56 +0.3 154,730 - HMPREF1058_RS03940 0.56 -0.1 154,734 - HMPREF1058_RS03940 0.56 +0.7 154,738 - HMPREF1058_RS03940 0.57 +1.4 154,774 - HMPREF1058_RS03940 0.60 +2.3 154,843 - HMPREF1058_RS03940 0.66 +1.9 154,849 - HMPREF1058_RS03940 0.67 +0.6 154,998 - HMPREF1058_RS03940 0.80 +0.1 155,011 - HMPREF1058_RS03940 0.81 +0.3 155,042 - HMPREF1058_RS03940 0.84 -0.3 155,277 - +0.5 155,285 + +0.8 155,307 + HMPREF1058_RS03935 0.11 +0.1 155,419 + HMPREF1058_RS03935 0.52 +0.9 155,428 + HMPREF1058_RS03935 0.55 +0.6 155,443 - HMPREF1058_RS03935 0.60 +1.3 155,452 - HMPREF1058_RS03935 0.63 +0.4 155,454 + HMPREF1058_RS03935 0.64 +0.7 155,455 - HMPREF1058_RS03935 0.65 +1.0 155,480 + HMPREF1058_RS03935 0.73 +0.9 155,485 + HMPREF1058_RS03935 0.75 -0.1 155,486 - HMPREF1058_RS03935 0.76 +0.1 155,486 - HMPREF1058_RS03935 0.76 +0.9 155,488 - HMPREF1058_RS03935 0.76 +0.3 155,529 + -0.0 155,531 + +0.7 155,532 - +0.1 155,561 + -0.4 155,578 + +0.5 155,583 - -0.9 155,613 + +0.3 155,729 - HMPREF1058_RS03930 0.15 +0.9 155,798 - HMPREF1058_RS03930 0.23 +0.6 155,965 - HMPREF1058_RS03930 0.44 +0.1 155,965 - HMPREF1058_RS03930 0.44 -0.3 155,973 - HMPREF1058_RS03930 0.45 -1.6 155,998 + HMPREF1058_RS03930 0.48 -0.6 156,013 + HMPREF1058_RS03930 0.50 +0.6
Or see this region's nucleotide sequence