Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03205 and HMPREF1058_RS03200 are separated by 253 nucleotides HMPREF1058_RS03200 and HMPREF1058_RS03195 are separated by 213 nucleotides HMPREF1058_RS03195 and HMPREF1058_RS03190 overlap by 4 nucleotides HMPREF1058_RS03190 and HMPREF1058_RS03185 are separated by 14 nucleotides
HMPREF1058_RS03205: HMPREF1058_RS03205 - glycogen/starch synthase, at 332,461 to 334,131
_RS03205
HMPREF1058_RS03200: HMPREF1058_RS03200 - V-type ATP synthase subunit K, at 334,385 to 334,849
_RS03200
HMPREF1058_RS03195: HMPREF1058_RS03195 - V-type ATP synthase subunit I, at 335,063 to 336,868
_RS03195
HMPREF1058_RS03190: HMPREF1058_RS03190 - V-type ATP synthase subunit D, at 336,865 to 337,470
_RS03190
HMPREF1058_RS03185: HMPREF1058_RS03185 - V-type ATP synthase subunit B, at 337,485 to 338,807
_RS03185
Position (kb) 335
336
337 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 334.072 kb on - strand at 334.078 kb on + strand at 334.078 kb on + strand at 334.078 kb on + strand at 334.078 kb on + strand at 334.078 kb on + strand at 334.079 kb on - strand at 334.079 kb on - strand at 334.099 kb on + strand at 334.102 kb on - strand at 334.102 kb on - strand at 334.102 kb on - strand at 334.203 kb on + strand at 334.240 kb on - strand at 334.435 kb on + strand, within HMPREF1058_RS03200 at 334.436 kb on - strand, within HMPREF1058_RS03200 at 334.440 kb on + strand, within HMPREF1058_RS03200 at 334.472 kb on - strand, within HMPREF1058_RS03200 at 334.481 kb on + strand, within HMPREF1058_RS03200 at 334.482 kb on - strand, within HMPREF1058_RS03200 at 334.486 kb on + strand, within HMPREF1058_RS03200 at 334.556 kb on + strand, within HMPREF1058_RS03200 at 334.668 kb on + strand, within HMPREF1058_RS03200 at 334.668 kb on + strand, within HMPREF1058_RS03200 at 334.748 kb on - strand, within HMPREF1058_RS03200 at 334.770 kb on - strand, within HMPREF1058_RS03200 at 334.807 kb on + strand at 334.807 kb on + strand at 334.808 kb on - strand at 334.849 kb on + strand at 334.865 kb on - strand at 334.947 kb on + strand at 334.948 kb on - strand at 334.948 kb on - strand at 334.950 kb on + strand at 334.951 kb on - strand at 334.951 kb on - strand at 334.951 kb on - strand at 335.168 kb on - strand at 335.185 kb on + strand at 335.185 kb on + strand at 335.185 kb on + strand at 335.195 kb on + strand at 335.273 kb on + strand, within HMPREF1058_RS03195 at 335.288 kb on - strand, within HMPREF1058_RS03195 at 335.322 kb on + strand, within HMPREF1058_RS03195 at 335.323 kb on - strand, within HMPREF1058_RS03195 at 335.512 kb on + strand, within HMPREF1058_RS03195 at 335.513 kb on - strand, within HMPREF1058_RS03195 at 335.516 kb on + strand, within HMPREF1058_RS03195 at 335.523 kb on - strand, within HMPREF1058_RS03195 at 335.553 kb on + strand, within HMPREF1058_RS03195 at 335.608 kb on + strand, within HMPREF1058_RS03195 at 335.608 kb on + strand, within HMPREF1058_RS03195 at 335.641 kb on + strand, within HMPREF1058_RS03195 at 335.758 kb on + strand, within HMPREF1058_RS03195 at 335.758 kb on + strand, within HMPREF1058_RS03195 at 335.828 kb on - strand, within HMPREF1058_RS03195 at 335.828 kb on - strand, within HMPREF1058_RS03195 at 335.942 kb on - strand, within HMPREF1058_RS03195 at 335.958 kb on + strand, within HMPREF1058_RS03195 at 335.959 kb on - strand, within HMPREF1058_RS03195 at 335.999 kb on - strand, within HMPREF1058_RS03195 at 336.001 kb on + strand, within HMPREF1058_RS03195 at 336.013 kb on + strand, within HMPREF1058_RS03195 at 336.017 kb on + strand, within HMPREF1058_RS03195 at 336.018 kb on - strand, within HMPREF1058_RS03195 at 336.054 kb on + strand, within HMPREF1058_RS03195 at 336.179 kb on + strand, within HMPREF1058_RS03195 at 336.245 kb on + strand, within HMPREF1058_RS03195 at 336.246 kb on - strand, within HMPREF1058_RS03195 at 336.250 kb on + strand, within HMPREF1058_RS03195 at 336.250 kb on + strand, within HMPREF1058_RS03195 at 336.305 kb on - strand, within HMPREF1058_RS03195 at 336.305 kb on - strand, within HMPREF1058_RS03195 at 336.423 kb on + strand, within HMPREF1058_RS03195 at 336.643 kb on + strand, within HMPREF1058_RS03195 at 336.673 kb on + strand, within HMPREF1058_RS03195 at 336.694 kb on + strand at 336.820 kb on - strand at 336.959 kb on - strand, within HMPREF1058_RS03190 at 337.033 kb on - strand, within HMPREF1058_RS03190 at 337.068 kb on + strand, within HMPREF1058_RS03190 at 337.069 kb on - strand, within HMPREF1058_RS03190 at 337.112 kb on + strand, within HMPREF1058_RS03190 at 337.112 kb on + strand, within HMPREF1058_RS03190 at 337.113 kb on - strand, within HMPREF1058_RS03190 at 337.113 kb on - strand, within HMPREF1058_RS03190 at 337.114 kb on + strand, within HMPREF1058_RS03190 at 337.115 kb on - strand, within HMPREF1058_RS03190 at 337.384 kb on - strand, within HMPREF1058_RS03190 at 337.390 kb on - strand, within HMPREF1058_RS03190 at 337.449 kb on + strand at 337.482 kb on - strand at 337.653 kb on - strand, within HMPREF1058_RS03185 at 337.694 kb on + strand, within HMPREF1058_RS03185 at 337.695 kb on - strand, within HMPREF1058_RS03185 at 337.721 kb on - strand, within HMPREF1058_RS03185 at 337.773 kb on - strand, within HMPREF1058_RS03185
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3 remove 334,072 - -1.0 334,078 + -0.6 334,078 + -1.0 334,078 + -0.2 334,078 + -0.6 334,078 + -1.0 334,079 - -0.3 334,079 - -0.2 334,099 + +0.5 334,102 - +0.7 334,102 - -0.2 334,102 - +0.5 334,203 + +0.6 334,240 - -1.0 334,435 + HMPREF1058_RS03200 0.11 -0.1 334,436 - HMPREF1058_RS03200 0.11 +1.2 334,440 + HMPREF1058_RS03200 0.12 +0.8 334,472 - HMPREF1058_RS03200 0.19 +1.6 334,481 + HMPREF1058_RS03200 0.21 +0.9 334,482 - HMPREF1058_RS03200 0.21 +1.2 334,486 + HMPREF1058_RS03200 0.22 -1.1 334,556 + HMPREF1058_RS03200 0.37 -0.1 334,668 + HMPREF1058_RS03200 0.61 +0.7 334,668 + HMPREF1058_RS03200 0.61 +1.9 334,748 - HMPREF1058_RS03200 0.78 +1.4 334,770 - HMPREF1058_RS03200 0.83 +1.4 334,807 + +0.3 334,807 + +1.0 334,808 - +0.3 334,849 + +1.7 334,865 - +0.4 334,947 + +0.9 334,948 - +1.0 334,948 - +0.1 334,950 + +0.3 334,951 - -1.3 334,951 - +2.1 334,951 - +0.4 335,168 - +1.0 335,185 + -0.3 335,185 + -0.1 335,185 + +1.1 335,195 + +1.0 335,273 + HMPREF1058_RS03195 0.12 +0.9 335,288 - HMPREF1058_RS03195 0.12 +1.0 335,322 + HMPREF1058_RS03195 0.14 -0.1 335,323 - HMPREF1058_RS03195 0.14 -1.0 335,512 + HMPREF1058_RS03195 0.25 +2.3 335,513 - HMPREF1058_RS03195 0.25 +0.5 335,516 + HMPREF1058_RS03195 0.25 +1.1 335,523 - HMPREF1058_RS03195 0.25 -0.5 335,553 + HMPREF1058_RS03195 0.27 +0.2 335,608 + HMPREF1058_RS03195 0.30 +2.3 335,608 + HMPREF1058_RS03195 0.30 -0.5 335,641 + HMPREF1058_RS03195 0.32 -0.2 335,758 + HMPREF1058_RS03195 0.38 -2.4 335,758 + HMPREF1058_RS03195 0.38 -1.0 335,828 - HMPREF1058_RS03195 0.42 +1.0 335,828 - HMPREF1058_RS03195 0.42 +1.0 335,942 - HMPREF1058_RS03195 0.49 +0.3 335,958 + HMPREF1058_RS03195 0.50 +0.1 335,959 - HMPREF1058_RS03195 0.50 -0.1 335,999 - HMPREF1058_RS03195 0.52 +1.7 336,001 + HMPREF1058_RS03195 0.52 +0.7 336,013 + HMPREF1058_RS03195 0.53 +0.6 336,017 + HMPREF1058_RS03195 0.53 -0.3 336,018 - HMPREF1058_RS03195 0.53 -0.1 336,054 + HMPREF1058_RS03195 0.55 +0.5 336,179 + HMPREF1058_RS03195 0.62 +0.5 336,245 + HMPREF1058_RS03195 0.65 +0.3 336,246 - HMPREF1058_RS03195 0.66 +3.7 336,250 + HMPREF1058_RS03195 0.66 +0.8 336,250 + HMPREF1058_RS03195 0.66 +1.1 336,305 - HMPREF1058_RS03195 0.69 +0.3 336,305 - HMPREF1058_RS03195 0.69 +0.9 336,423 + HMPREF1058_RS03195 0.75 +0.7 336,643 + HMPREF1058_RS03195 0.87 +2.3 336,673 + HMPREF1058_RS03195 0.89 -0.5 336,694 + +0.3 336,820 - +0.4 336,959 - HMPREF1058_RS03190 0.16 -0.8 337,033 - HMPREF1058_RS03190 0.28 +0.9 337,068 + HMPREF1058_RS03190 0.33 -0.1 337,069 - HMPREF1058_RS03190 0.34 -0.3 337,112 + HMPREF1058_RS03190 0.41 +0.7 337,112 + HMPREF1058_RS03190 0.41 +0.1 337,113 - HMPREF1058_RS03190 0.41 +0.9 337,113 - HMPREF1058_RS03190 0.41 +1.2 337,114 + HMPREF1058_RS03190 0.41 +0.7 337,115 - HMPREF1058_RS03190 0.41 +0.6 337,384 - HMPREF1058_RS03190 0.86 +0.8 337,390 - HMPREF1058_RS03190 0.87 +1.1 337,449 + -0.1 337,482 - +0.9 337,653 - HMPREF1058_RS03185 0.13 +0.8 337,694 + HMPREF1058_RS03185 0.16 +0.8 337,695 - HMPREF1058_RS03185 0.16 +1.2 337,721 - HMPREF1058_RS03185 0.18 +0.2 337,773 - HMPREF1058_RS03185 0.22 +0.7
Or see this region's nucleotide sequence