Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03195 and HMPREF1058_RS03190 overlap by 4 nucleotides HMPREF1058_RS03190 and HMPREF1058_RS03185 are separated by 14 nucleotides
HMPREF1058_RS03195: HMPREF1058_RS03195 - V-type ATP synthase subunit I, at 335,063 to 336,868
_RS03195
HMPREF1058_RS03190: HMPREF1058_RS03190 - V-type ATP synthase subunit D, at 336,865 to 337,470
_RS03190
HMPREF1058_RS03185: HMPREF1058_RS03185 - V-type ATP synthase subunit B, at 337,485 to 338,807
_RS03185
Position (kb) 336
337
338 Strain fitness (log2 ratio) -1
0
1
2
3 at 335.942 kb on - strand, within HMPREF1058_RS03195 at 335.958 kb on + strand, within HMPREF1058_RS03195 at 335.959 kb on - strand, within HMPREF1058_RS03195 at 335.999 kb on - strand, within HMPREF1058_RS03195 at 336.001 kb on + strand, within HMPREF1058_RS03195 at 336.013 kb on + strand, within HMPREF1058_RS03195 at 336.017 kb on + strand, within HMPREF1058_RS03195 at 336.018 kb on - strand, within HMPREF1058_RS03195 at 336.054 kb on + strand, within HMPREF1058_RS03195 at 336.179 kb on + strand, within HMPREF1058_RS03195 at 336.245 kb on + strand, within HMPREF1058_RS03195 at 336.246 kb on - strand, within HMPREF1058_RS03195 at 336.250 kb on + strand, within HMPREF1058_RS03195 at 336.250 kb on + strand, within HMPREF1058_RS03195 at 336.305 kb on - strand, within HMPREF1058_RS03195 at 336.305 kb on - strand, within HMPREF1058_RS03195 at 336.423 kb on + strand, within HMPREF1058_RS03195 at 336.643 kb on + strand, within HMPREF1058_RS03195 at 336.673 kb on + strand, within HMPREF1058_RS03195 at 336.694 kb on + strand at 336.820 kb on - strand at 336.959 kb on - strand, within HMPREF1058_RS03190 at 337.033 kb on - strand, within HMPREF1058_RS03190 at 337.068 kb on + strand, within HMPREF1058_RS03190 at 337.069 kb on - strand, within HMPREF1058_RS03190 at 337.112 kb on + strand, within HMPREF1058_RS03190 at 337.112 kb on + strand, within HMPREF1058_RS03190 at 337.113 kb on - strand, within HMPREF1058_RS03190 at 337.113 kb on - strand, within HMPREF1058_RS03190 at 337.114 kb on + strand, within HMPREF1058_RS03190 at 337.115 kb on - strand, within HMPREF1058_RS03190 at 337.384 kb on - strand, within HMPREF1058_RS03190 at 337.390 kb on - strand, within HMPREF1058_RS03190 at 337.449 kb on + strand at 337.482 kb on - strand at 337.653 kb on - strand, within HMPREF1058_RS03185 at 337.694 kb on + strand, within HMPREF1058_RS03185 at 337.695 kb on - strand, within HMPREF1058_RS03185 at 337.721 kb on - strand, within HMPREF1058_RS03185 at 337.773 kb on - strand, within HMPREF1058_RS03185 at 337.875 kb on - strand, within HMPREF1058_RS03185 at 337.877 kb on - strand, within HMPREF1058_RS03185 at 337.908 kb on - strand, within HMPREF1058_RS03185 at 337.926 kb on - strand, within HMPREF1058_RS03185 at 337.926 kb on - strand, within HMPREF1058_RS03185 at 338.018 kb on + strand, within HMPREF1058_RS03185 at 338.060 kb on + strand, within HMPREF1058_RS03185 at 338.061 kb on - strand, within HMPREF1058_RS03185 at 338.078 kb on - strand, within HMPREF1058_RS03185 at 338.078 kb on - strand, within HMPREF1058_RS03185 at 338.087 kb on + strand, within HMPREF1058_RS03185 at 338.106 kb on + strand, within HMPREF1058_RS03185 at 338.117 kb on + strand, within HMPREF1058_RS03185 at 338.179 kb on - strand, within HMPREF1058_RS03185 at 338.198 kb on + strand, within HMPREF1058_RS03185 at 338.216 kb on + strand, within HMPREF1058_RS03185 at 338.244 kb on + strand, within HMPREF1058_RS03185 at 338.245 kb on - strand, within HMPREF1058_RS03185 at 338.257 kb on + strand, within HMPREF1058_RS03185 at 338.263 kb on + strand, within HMPREF1058_RS03185 at 338.399 kb on + strand, within HMPREF1058_RS03185 at 338.399 kb on + strand, within HMPREF1058_RS03185 at 338.400 kb on - strand, within HMPREF1058_RS03185 at 338.400 kb on - strand, within HMPREF1058_RS03185
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3 remove 335,942 - HMPREF1058_RS03195 0.49 +0.3 335,958 + HMPREF1058_RS03195 0.50 +0.1 335,959 - HMPREF1058_RS03195 0.50 -0.1 335,999 - HMPREF1058_RS03195 0.52 +1.7 336,001 + HMPREF1058_RS03195 0.52 +0.7 336,013 + HMPREF1058_RS03195 0.53 +0.6 336,017 + HMPREF1058_RS03195 0.53 -0.3 336,018 - HMPREF1058_RS03195 0.53 -0.1 336,054 + HMPREF1058_RS03195 0.55 +0.5 336,179 + HMPREF1058_RS03195 0.62 +0.5 336,245 + HMPREF1058_RS03195 0.65 +0.3 336,246 - HMPREF1058_RS03195 0.66 +3.7 336,250 + HMPREF1058_RS03195 0.66 +0.8 336,250 + HMPREF1058_RS03195 0.66 +1.1 336,305 - HMPREF1058_RS03195 0.69 +0.3 336,305 - HMPREF1058_RS03195 0.69 +0.9 336,423 + HMPREF1058_RS03195 0.75 +0.7 336,643 + HMPREF1058_RS03195 0.87 +2.3 336,673 + HMPREF1058_RS03195 0.89 -0.5 336,694 + +0.3 336,820 - +0.4 336,959 - HMPREF1058_RS03190 0.16 -0.8 337,033 - HMPREF1058_RS03190 0.28 +0.9 337,068 + HMPREF1058_RS03190 0.33 -0.1 337,069 - HMPREF1058_RS03190 0.34 -0.3 337,112 + HMPREF1058_RS03190 0.41 +0.7 337,112 + HMPREF1058_RS03190 0.41 +0.1 337,113 - HMPREF1058_RS03190 0.41 +0.9 337,113 - HMPREF1058_RS03190 0.41 +1.2 337,114 + HMPREF1058_RS03190 0.41 +0.7 337,115 - HMPREF1058_RS03190 0.41 +0.6 337,384 - HMPREF1058_RS03190 0.86 +0.8 337,390 - HMPREF1058_RS03190 0.87 +1.1 337,449 + -0.1 337,482 - +0.9 337,653 - HMPREF1058_RS03185 0.13 +0.8 337,694 + HMPREF1058_RS03185 0.16 +0.8 337,695 - HMPREF1058_RS03185 0.16 +1.2 337,721 - HMPREF1058_RS03185 0.18 +0.2 337,773 - HMPREF1058_RS03185 0.22 +0.7 337,875 - HMPREF1058_RS03185 0.29 +0.6 337,877 - HMPREF1058_RS03185 0.30 -0.5 337,908 - HMPREF1058_RS03185 0.32 +0.3 337,926 - HMPREF1058_RS03185 0.33 +0.1 337,926 - HMPREF1058_RS03185 0.33 +0.5 338,018 + HMPREF1058_RS03185 0.40 +0.8 338,060 + HMPREF1058_RS03185 0.43 +0.8 338,061 - HMPREF1058_RS03185 0.44 +1.1 338,078 - HMPREF1058_RS03185 0.45 +0.8 338,078 - HMPREF1058_RS03185 0.45 +1.0 338,087 + HMPREF1058_RS03185 0.46 +0.1 338,106 + HMPREF1058_RS03185 0.47 +1.0 338,117 + HMPREF1058_RS03185 0.48 +1.1 338,179 - HMPREF1058_RS03185 0.52 -0.6 338,198 + HMPREF1058_RS03185 0.54 +1.3 338,216 + HMPREF1058_RS03185 0.55 +1.3 338,244 + HMPREF1058_RS03185 0.57 +1.1 338,245 - HMPREF1058_RS03185 0.57 +1.0 338,257 + HMPREF1058_RS03185 0.58 +1.4 338,263 + HMPREF1058_RS03185 0.59 +0.6 338,399 + HMPREF1058_RS03185 0.69 +0.8 338,399 + HMPREF1058_RS03185 0.69 -0.1 338,400 - HMPREF1058_RS03185 0.69 +1.0 338,400 - HMPREF1058_RS03185 0.69 +0.7
Or see this region's nucleotide sequence