Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03185 and HMPREF1058_RS03180 are separated by 35 nucleotides HMPREF1058_RS03180 and HMPREF1058_RS03175 are separated by 18 nucleotides HMPREF1058_RS03175 and HMPREF1058_RS03170 are separated by 9 nucleotides
HMPREF1058_RS03185: HMPREF1058_RS03185 - V-type ATP synthase subunit B, at 337,485 to 338,807
_RS03185
HMPREF1058_RS03180: HMPREF1058_RS03180 - V-type ATP synthase subunit A, at 338,843 to 340,597
_RS03180
HMPREF1058_RS03175: HMPREF1058_RS03175 - DUF2764 domain-containing protein, at 340,616 to 341,452
_RS03175
HMPREF1058_RS03170: HMPREF1058_RS03170 - hypothetical protein, at 341,462 to 342,052
_RS03170
Position (kb) 338
339
340
341 Strain fitness (log2 ratio) -1
0
1
2
3 at 337.875 kb on - strand, within HMPREF1058_RS03185 at 337.877 kb on - strand, within HMPREF1058_RS03185 at 337.908 kb on - strand, within HMPREF1058_RS03185 at 337.926 kb on - strand, within HMPREF1058_RS03185 at 337.926 kb on - strand, within HMPREF1058_RS03185 at 338.018 kb on + strand, within HMPREF1058_RS03185 at 338.060 kb on + strand, within HMPREF1058_RS03185 at 338.061 kb on - strand, within HMPREF1058_RS03185 at 338.078 kb on - strand, within HMPREF1058_RS03185 at 338.078 kb on - strand, within HMPREF1058_RS03185 at 338.087 kb on + strand, within HMPREF1058_RS03185 at 338.106 kb on + strand, within HMPREF1058_RS03185 at 338.117 kb on + strand, within HMPREF1058_RS03185 at 338.179 kb on - strand, within HMPREF1058_RS03185 at 338.198 kb on + strand, within HMPREF1058_RS03185 at 338.216 kb on + strand, within HMPREF1058_RS03185 at 338.244 kb on + strand, within HMPREF1058_RS03185 at 338.245 kb on - strand, within HMPREF1058_RS03185 at 338.257 kb on + strand, within HMPREF1058_RS03185 at 338.263 kb on + strand, within HMPREF1058_RS03185 at 338.399 kb on + strand, within HMPREF1058_RS03185 at 338.399 kb on + strand, within HMPREF1058_RS03185 at 338.400 kb on - strand, within HMPREF1058_RS03185 at 338.400 kb on - strand, within HMPREF1058_RS03185 at 338.601 kb on + strand, within HMPREF1058_RS03185 at 338.720 kb on - strand at 338.777 kb on + strand at 338.778 kb on - strand at 338.779 kb on + strand at 338.782 kb on - strand at 338.782 kb on - strand at 338.873 kb on + strand at 338.896 kb on - strand at 338.915 kb on - strand at 338.958 kb on + strand at 338.980 kb on + strand at 339.133 kb on - strand, within HMPREF1058_RS03180 at 339.245 kb on - strand, within HMPREF1058_RS03180 at 339.256 kb on + strand, within HMPREF1058_RS03180 at 339.258 kb on + strand, within HMPREF1058_RS03180 at 339.357 kb on + strand, within HMPREF1058_RS03180 at 339.425 kb on + strand, within HMPREF1058_RS03180 at 339.426 kb on - strand, within HMPREF1058_RS03180 at 339.445 kb on + strand, within HMPREF1058_RS03180 at 339.445 kb on + strand, within HMPREF1058_RS03180 at 339.446 kb on - strand at 339.473 kb on + strand, within HMPREF1058_RS03180 at 339.473 kb on + strand, within HMPREF1058_RS03180 at 339.473 kb on + strand, within HMPREF1058_RS03180 at 339.474 kb on - strand, within HMPREF1058_RS03180 at 339.478 kb on - strand, within HMPREF1058_RS03180 at 339.639 kb on + strand, within HMPREF1058_RS03180 at 339.666 kb on + strand, within HMPREF1058_RS03180 at 339.667 kb on - strand, within HMPREF1058_RS03180 at 339.715 kb on + strand, within HMPREF1058_RS03180 at 339.722 kb on - strand at 339.724 kb on + strand, within HMPREF1058_RS03180 at 339.724 kb on + strand, within HMPREF1058_RS03180 at 339.724 kb on + strand, within HMPREF1058_RS03180 at 339.724 kb on + strand, within HMPREF1058_RS03180 at 339.740 kb on - strand, within HMPREF1058_RS03180 at 339.901 kb on + strand, within HMPREF1058_RS03180 at 339.921 kb on - strand, within HMPREF1058_RS03180 at 339.943 kb on + strand, within HMPREF1058_RS03180 at 339.943 kb on + strand, within HMPREF1058_RS03180 at 339.970 kb on + strand, within HMPREF1058_RS03180 at 340.003 kb on + strand, within HMPREF1058_RS03180 at 340.094 kb on - strand, within HMPREF1058_RS03180 at 340.094 kb on - strand, within HMPREF1058_RS03180 at 340.094 kb on - strand, within HMPREF1058_RS03180 at 340.096 kb on - strand, within HMPREF1058_RS03180 at 340.126 kb on + strand, within HMPREF1058_RS03180 at 340.128 kb on + strand, within HMPREF1058_RS03180 at 340.132 kb on + strand, within HMPREF1058_RS03180 at 340.238 kb on + strand, within HMPREF1058_RS03180 at 340.278 kb on + strand, within HMPREF1058_RS03180 at 340.279 kb on - strand, within HMPREF1058_RS03180 at 340.446 kb on + strand at 340.447 kb on - strand at 340.547 kb on - strand at 340.597 kb on + strand at 340.597 kb on + strand at 340.598 kb on - strand at 340.640 kb on + strand at 340.814 kb on + strand, within HMPREF1058_RS03175 at 340.991 kb on + strand, within HMPREF1058_RS03175 at 341.003 kb on + strand, within HMPREF1058_RS03175 at 341.004 kb on - strand, within HMPREF1058_RS03175 at 341.004 kb on - strand, within HMPREF1058_RS03175 at 341.070 kb on + strand, within HMPREF1058_RS03175 at 341.079 kb on + strand, within HMPREF1058_RS03175 at 341.091 kb on - strand, within HMPREF1058_RS03175 at 341.136 kb on + strand, within HMPREF1058_RS03175 at 341.161 kb on - strand, within HMPREF1058_RS03175 at 341.170 kb on - strand, within HMPREF1058_RS03175 at 341.257 kb on + strand, within HMPREF1058_RS03175 at 341.257 kb on + strand, within HMPREF1058_RS03175 at 341.384 kb on - strand at 341.385 kb on + strand at 341.463 kb on + strand at 341.477 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3 remove 337,875 - HMPREF1058_RS03185 0.29 +0.6 337,877 - HMPREF1058_RS03185 0.30 -0.5 337,908 - HMPREF1058_RS03185 0.32 +0.3 337,926 - HMPREF1058_RS03185 0.33 +0.1 337,926 - HMPREF1058_RS03185 0.33 +0.5 338,018 + HMPREF1058_RS03185 0.40 +0.8 338,060 + HMPREF1058_RS03185 0.43 +0.8 338,061 - HMPREF1058_RS03185 0.44 +1.1 338,078 - HMPREF1058_RS03185 0.45 +0.8 338,078 - HMPREF1058_RS03185 0.45 +1.0 338,087 + HMPREF1058_RS03185 0.46 +0.1 338,106 + HMPREF1058_RS03185 0.47 +1.0 338,117 + HMPREF1058_RS03185 0.48 +1.1 338,179 - HMPREF1058_RS03185 0.52 -0.6 338,198 + HMPREF1058_RS03185 0.54 +1.3 338,216 + HMPREF1058_RS03185 0.55 +1.3 338,244 + HMPREF1058_RS03185 0.57 +1.1 338,245 - HMPREF1058_RS03185 0.57 +1.0 338,257 + HMPREF1058_RS03185 0.58 +1.4 338,263 + HMPREF1058_RS03185 0.59 +0.6 338,399 + HMPREF1058_RS03185 0.69 +0.8 338,399 + HMPREF1058_RS03185 0.69 -0.1 338,400 - HMPREF1058_RS03185 0.69 +1.0 338,400 - HMPREF1058_RS03185 0.69 +0.7 338,601 + HMPREF1058_RS03185 0.84 -0.4 338,720 - +0.3 338,777 + -0.2 338,778 - +1.3 338,779 + +1.1 338,782 - +0.7 338,782 - +2.5 338,873 + +1.4 338,896 - +0.6 338,915 - +0.7 338,958 + +0.2 338,980 + +1.6 339,133 - HMPREF1058_RS03180 0.17 +0.3 339,245 - HMPREF1058_RS03180 0.23 +0.9 339,256 + HMPREF1058_RS03180 0.24 +2.4 339,258 + HMPREF1058_RS03180 0.24 +0.5 339,357 + HMPREF1058_RS03180 0.29 +2.1 339,425 + HMPREF1058_RS03180 0.33 +0.0 339,426 - HMPREF1058_RS03180 0.33 +1.0 339,445 + HMPREF1058_RS03180 0.34 +1.8 339,445 + HMPREF1058_RS03180 0.34 +1.1 339,446 - +1.3 339,473 + HMPREF1058_RS03180 0.36 +1.1 339,473 + HMPREF1058_RS03180 0.36 -0.9 339,473 + HMPREF1058_RS03180 0.36 +0.9 339,474 - HMPREF1058_RS03180 0.36 -0.1 339,478 - HMPREF1058_RS03180 0.36 +0.8 339,639 + HMPREF1058_RS03180 0.45 +0.1 339,666 + HMPREF1058_RS03180 0.47 +0.4 339,667 - HMPREF1058_RS03180 0.47 -0.2 339,715 + HMPREF1058_RS03180 0.50 +0.7 339,722 - +0.3 339,724 + HMPREF1058_RS03180 0.50 +1.3 339,724 + HMPREF1058_RS03180 0.50 +1.4 339,724 + HMPREF1058_RS03180 0.50 +0.6 339,724 + HMPREF1058_RS03180 0.50 +1.8 339,740 - HMPREF1058_RS03180 0.51 -0.2 339,901 + HMPREF1058_RS03180 0.60 +1.2 339,921 - HMPREF1058_RS03180 0.61 +1.0 339,943 + HMPREF1058_RS03180 0.63 +1.0 339,943 + HMPREF1058_RS03180 0.63 +0.9 339,970 + HMPREF1058_RS03180 0.64 -1.2 340,003 + HMPREF1058_RS03180 0.66 +0.9 340,094 - HMPREF1058_RS03180 0.71 +1.6 340,094 - HMPREF1058_RS03180 0.71 +1.1 340,094 - HMPREF1058_RS03180 0.71 +0.5 340,096 - HMPREF1058_RS03180 0.71 +1.4 340,126 + HMPREF1058_RS03180 0.73 +1.5 340,128 + HMPREF1058_RS03180 0.73 +0.5 340,132 + HMPREF1058_RS03180 0.73 +0.9 340,238 + HMPREF1058_RS03180 0.79 +0.9 340,278 + HMPREF1058_RS03180 0.82 +1.0 340,279 - HMPREF1058_RS03180 0.82 +0.0 340,446 + +1.3 340,447 - +0.5 340,547 - +0.4 340,597 + +0.8 340,597 + +0.6 340,598 - +0.8 340,640 + -0.3 340,814 + HMPREF1058_RS03175 0.24 +1.5 340,991 + HMPREF1058_RS03175 0.45 +0.6 341,003 + HMPREF1058_RS03175 0.46 +0.3 341,004 - HMPREF1058_RS03175 0.46 +1.0 341,004 - HMPREF1058_RS03175 0.46 -0.7 341,070 + HMPREF1058_RS03175 0.54 +0.2 341,079 + HMPREF1058_RS03175 0.55 +0.6 341,091 - HMPREF1058_RS03175 0.57 -0.4 341,136 + HMPREF1058_RS03175 0.62 +1.4 341,161 - HMPREF1058_RS03175 0.65 +2.9 341,170 - HMPREF1058_RS03175 0.66 +0.7 341,257 + HMPREF1058_RS03175 0.77 +0.5 341,257 + HMPREF1058_RS03175 0.77 +0.6 341,384 - +1.1 341,385 + +1.6 341,463 + +1.2 341,477 + +0.9
Or see this region's nucleotide sequence