Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS0119985 and HMPREF1058_RS02850 are separated by 260 nucleotides HMPREF1058_RS02850 and HMPREF1058_RS02845 are separated by 282 nucleotides
HMPREF1058_RS0119985: HMPREF1058_RS0119985 - NAD(P)H-dependent oxidoreductase subunit E, at 72,081 to 72,417
_RS0119985
HMPREF1058_RS02850: HMPREF1058_RS02850 - DUF1566 domain-containing protein, at 72,678 to 74,228
_RS02850
HMPREF1058_RS02845: HMPREF1058_RS02845 - arylsulfatase, at 74,511 to 76,109
_RS02845
Position (kb) 72
73
74
75 Strain fitness (log2 ratio) -2
-1
0
1
2 at 71.683 kb on + strand at 71.707 kb on + strand at 71.767 kb on - strand at 71.839 kb on - strand at 71.850 kb on - strand at 71.863 kb on - strand at 71.866 kb on - strand at 71.867 kb on + strand at 71.874 kb on - strand at 71.877 kb on + strand at 72.008 kb on + strand at 72.142 kb on + strand, within HMPREF1058_RS0119985 at 72.143 kb on - strand, within HMPREF1058_RS0119985 at 72.148 kb on + strand, within HMPREF1058_RS0119985 at 72.176 kb on - strand, within HMPREF1058_RS0119985 at 72.232 kb on + strand at 72.358 kb on - strand, within HMPREF1058_RS0119985 at 72.369 kb on - strand, within HMPREF1058_RS0119985 at 72.377 kb on + strand, within HMPREF1058_RS0119985 at 72.409 kb on - strand at 72.409 kb on - strand at 72.413 kb on + strand at 72.482 kb on + strand at 72.517 kb on - strand at 72.620 kb on - strand at 72.620 kb on - strand at 72.662 kb on + strand at 72.707 kb on - strand at 72.719 kb on + strand at 72.745 kb on - strand at 72.902 kb on - strand, within HMPREF1058_RS02850 at 72.985 kb on + strand, within HMPREF1058_RS02850 at 72.986 kb on - strand, within HMPREF1058_RS02850 at 73.129 kb on + strand, within HMPREF1058_RS02850 at 73.130 kb on - strand, within HMPREF1058_RS02850 at 73.192 kb on - strand, within HMPREF1058_RS02850 at 73.192 kb on - strand, within HMPREF1058_RS02850 at 73.194 kb on - strand, within HMPREF1058_RS02850 at 73.313 kb on - strand, within HMPREF1058_RS02850 at 73.335 kb on - strand, within HMPREF1058_RS02850 at 73.361 kb on + strand, within HMPREF1058_RS02850 at 73.373 kb on - strand, within HMPREF1058_RS02850 at 73.375 kb on + strand, within HMPREF1058_RS02850 at 73.375 kb on + strand, within HMPREF1058_RS02850 at 73.402 kb on - strand, within HMPREF1058_RS02850 at 73.470 kb on - strand, within HMPREF1058_RS02850 at 73.470 kb on - strand, within HMPREF1058_RS02850 at 73.480 kb on + strand, within HMPREF1058_RS02850 at 73.586 kb on + strand, within HMPREF1058_RS02850 at 73.587 kb on - strand, within HMPREF1058_RS02850 at 73.673 kb on + strand, within HMPREF1058_RS02850 at 73.811 kb on - strand, within HMPREF1058_RS02850 at 73.827 kb on - strand, within HMPREF1058_RS02850 at 74.188 kb on - strand at 74.188 kb on - strand at 74.252 kb on - strand at 74.272 kb on - strand at 74.275 kb on + strand at 74.275 kb on + strand at 74.302 kb on - strand at 74.329 kb on + strand at 74.471 kb on + strand at 74.539 kb on + strand at 74.542 kb on - strand at 74.736 kb on + strand, within HMPREF1058_RS02845 at 74.740 kb on - strand, within HMPREF1058_RS02845 at 74.740 kb on - strand, within HMPREF1058_RS02845 at 74.928 kb on - strand, within HMPREF1058_RS02845 at 74.949 kb on - strand, within HMPREF1058_RS02845 at 75.035 kb on - strand at 75.131 kb on + strand, within HMPREF1058_RS02845 at 75.139 kb on + strand, within HMPREF1058_RS02845 at 75.157 kb on - strand, within HMPREF1058_RS02845 at 75.166 kb on - strand, within HMPREF1058_RS02845
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3 remove 71,683 + +0.4 71,707 + -0.4 71,767 - +0.1 71,839 - -0.1 71,850 - -2.1 71,863 - +0.8 71,866 - -0.2 71,867 + +0.2 71,874 - +0.5 71,877 + -0.3 72,008 + -0.1 72,142 + HMPREF1058_RS0119985 0.18 +0.3 72,143 - HMPREF1058_RS0119985 0.18 +0.1 72,148 + HMPREF1058_RS0119985 0.20 +0.0 72,176 - HMPREF1058_RS0119985 0.28 +1.3 72,232 + +0.6 72,358 - HMPREF1058_RS0119985 0.82 -0.1 72,369 - HMPREF1058_RS0119985 0.85 +0.2 72,377 + HMPREF1058_RS0119985 0.88 +0.1 72,409 - +1.3 72,409 - -1.8 72,413 + -0.7 72,482 + +0.3 72,517 - -0.4 72,620 - +0.5 72,620 - -0.5 72,662 + +2.0 72,707 - +0.3 72,719 + +0.4 72,745 - +0.6 72,902 - HMPREF1058_RS02850 0.14 +1.9 72,985 + HMPREF1058_RS02850 0.20 +0.3 72,986 - HMPREF1058_RS02850 0.20 +0.4 73,129 + HMPREF1058_RS02850 0.29 +0.2 73,130 - HMPREF1058_RS02850 0.29 +0.4 73,192 - HMPREF1058_RS02850 0.33 +0.1 73,192 - HMPREF1058_RS02850 0.33 -0.9 73,194 - HMPREF1058_RS02850 0.33 +0.5 73,313 - HMPREF1058_RS02850 0.41 +0.4 73,335 - HMPREF1058_RS02850 0.42 +0.2 73,361 + HMPREF1058_RS02850 0.44 +0.8 73,373 - HMPREF1058_RS02850 0.45 +0.0 73,375 + HMPREF1058_RS02850 0.45 +0.2 73,375 + HMPREF1058_RS02850 0.45 +0.9 73,402 - HMPREF1058_RS02850 0.47 +0.4 73,470 - HMPREF1058_RS02850 0.51 -0.3 73,470 - HMPREF1058_RS02850 0.51 +0.4 73,480 + HMPREF1058_RS02850 0.52 -0.8 73,586 + HMPREF1058_RS02850 0.59 +0.6 73,587 - HMPREF1058_RS02850 0.59 +0.9 73,673 + HMPREF1058_RS02850 0.64 +0.5 73,811 - HMPREF1058_RS02850 0.73 +0.3 73,827 - HMPREF1058_RS02850 0.74 +0.8 74,188 - +0.3 74,188 - +1.4 74,252 - +0.7 74,272 - +1.3 74,275 + +0.2 74,275 + +0.1 74,302 - +0.0 74,329 + +0.2 74,471 + +0.1 74,539 + +0.2 74,542 - +0.2 74,736 + HMPREF1058_RS02845 0.14 +0.0 74,740 - HMPREF1058_RS02845 0.14 +0.2 74,740 - HMPREF1058_RS02845 0.14 +0.2 74,928 - HMPREF1058_RS02845 0.26 -1.5 74,949 - HMPREF1058_RS02845 0.27 +1.4 75,035 - +0.6 75,131 + HMPREF1058_RS02845 0.39 +0.4 75,139 + HMPREF1058_RS02845 0.39 -0.3 75,157 - HMPREF1058_RS02845 0.40 +0.4 75,166 - HMPREF1058_RS02845 0.41 -1.5
Or see this region's nucleotide sequence