Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02270 and HMPREF1058_RS02265 are separated by 17 nucleotides HMPREF1058_RS02265 and HMPREF1058_RS02260 are separated by 120 nucleotides HMPREF1058_RS02260 and HMPREF1058_RS02255 are separated by 143 nucleotides HMPREF1058_RS02255 and HMPREF1058_RS02250 are separated by 158 nucleotides
HMPREF1058_RS02270: HMPREF1058_RS02270 - outer membrane beta-barrel protein, at 242,374 to 244,680
_RS02270
HMPREF1058_RS02265: HMPREF1058_RS02265 - peptidase C39, at 244,698 to 245,285
_RS02265
HMPREF1058_RS02260: HMPREF1058_RS02260 - hypothetical protein, at 245,406 to 246,332
_RS02260
HMPREF1058_RS02255: HMPREF1058_RS02255 - DUF3244 domain-containing protein, at 246,476 to 246,880
_RS02255
HMPREF1058_RS02250: HMPREF1058_RS02250 - hypothetical protein, at 247,039 to 248,895
_RS02250
Position (kb) 245
246
247 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 244.431 kb on + strand, within HMPREF1058_RS02270 at 244.537 kb on - strand at 244.537 kb on - strand at 244.540 kb on + strand at 244.541 kb on - strand at 244.541 kb on - strand at 244.543 kb on + strand at 244.544 kb on - strand at 244.544 kb on - strand at 244.577 kb on - strand at 244.581 kb on + strand at 244.624 kb on - strand at 244.632 kb on + strand at 244.639 kb on - strand at 244.719 kb on - strand at 244.719 kb on - strand at 244.720 kb on + strand at 244.723 kb on - strand at 244.756 kb on - strand at 244.757 kb on + strand, within HMPREF1058_RS02265 at 244.757 kb on + strand, within HMPREF1058_RS02265 at 244.757 kb on + strand, within HMPREF1058_RS02265 at 244.758 kb on - strand, within HMPREF1058_RS02265 at 244.758 kb on - strand, within HMPREF1058_RS02265 at 244.759 kb on + strand, within HMPREF1058_RS02265 at 244.809 kb on + strand, within HMPREF1058_RS02265 at 244.810 kb on - strand, within HMPREF1058_RS02265 at 244.988 kb on - strand, within HMPREF1058_RS02265 at 244.996 kb on - strand, within HMPREF1058_RS02265 at 245.092 kb on + strand, within HMPREF1058_RS02265 at 245.092 kb on + strand, within HMPREF1058_RS02265 at 245.093 kb on - strand, within HMPREF1058_RS02265 at 245.159 kb on + strand, within HMPREF1058_RS02265 at 245.160 kb on - strand, within HMPREF1058_RS02265 at 245.160 kb on - strand, within HMPREF1058_RS02265 at 245.160 kb on - strand, within HMPREF1058_RS02265 at 245.163 kb on + strand, within HMPREF1058_RS02265 at 245.164 kb on - strand, within HMPREF1058_RS02265 at 245.215 kb on - strand, within HMPREF1058_RS02265 at 245.384 kb on + strand at 245.384 kb on + strand at 245.411 kb on - strand at 245.438 kb on + strand at 245.439 kb on - strand at 245.440 kb on + strand at 245.440 kb on + strand at 245.440 kb on + strand at 245.447 kb on + strand at 245.463 kb on + strand at 245.466 kb on + strand at 245.467 kb on - strand at 245.479 kb on - strand at 245.572 kb on - strand, within HMPREF1058_RS02260 at 245.706 kb on + strand, within HMPREF1058_RS02260 at 245.707 kb on - strand, within HMPREF1058_RS02260 at 245.772 kb on + strand, within HMPREF1058_RS02260 at 245.773 kb on - strand, within HMPREF1058_RS02260 at 245.781 kb on + strand, within HMPREF1058_RS02260 at 245.781 kb on + strand, within HMPREF1058_RS02260 at 245.781 kb on + strand, within HMPREF1058_RS02260 at 245.782 kb on - strand, within HMPREF1058_RS02260 at 245.844 kb on - strand, within HMPREF1058_RS02260 at 245.859 kb on + strand, within HMPREF1058_RS02260 at 245.900 kb on + strand, within HMPREF1058_RS02260 at 245.925 kb on - strand, within HMPREF1058_RS02260 at 246.195 kb on + strand, within HMPREF1058_RS02260 at 246.196 kb on - strand, within HMPREF1058_RS02260 at 246.196 kb on - strand, within HMPREF1058_RS02260 at 246.196 kb on - strand, within HMPREF1058_RS02260 at 246.196 kb on - strand, within HMPREF1058_RS02260 at 246.198 kb on + strand, within HMPREF1058_RS02260 at 246.198 kb on + strand, within HMPREF1058_RS02260 at 246.226 kb on + strand, within HMPREF1058_RS02260 at 246.226 kb on + strand, within HMPREF1058_RS02260 at 246.226 kb on + strand, within HMPREF1058_RS02260 at 246.227 kb on - strand, within HMPREF1058_RS02260 at 246.231 kb on - strand, within HMPREF1058_RS02260 at 246.232 kb on + strand, within HMPREF1058_RS02260 at 246.232 kb on + strand, within HMPREF1058_RS02260 at 246.233 kb on - strand, within HMPREF1058_RS02260 at 246.235 kb on + strand, within HMPREF1058_RS02260 at 246.236 kb on - strand, within HMPREF1058_RS02260 at 246.332 kb on + strand at 246.334 kb on + strand at 246.334 kb on + strand at 246.389 kb on + strand at 246.447 kb on - strand at 246.451 kb on + strand at 246.517 kb on + strand, within HMPREF1058_RS02255 at 246.518 kb on - strand, within HMPREF1058_RS02255 at 246.652 kb on + strand, within HMPREF1058_RS02255 at 246.704 kb on - strand, within HMPREF1058_RS02255 at 246.705 kb on - strand, within HMPREF1058_RS02255 at 246.711 kb on - strand, within HMPREF1058_RS02255 at 246.768 kb on - strand, within HMPREF1058_RS02255 at 246.794 kb on - strand, within HMPREF1058_RS02255 at 246.803 kb on + strand, within HMPREF1058_RS02255 at 246.815 kb on - strand, within HMPREF1058_RS02255 at 246.819 kb on - strand, within HMPREF1058_RS02255 at 246.842 kb on + strand at 246.843 kb on - strand at 246.843 kb on - strand at 246.865 kb on + strand at 246.887 kb on - strand at 246.898 kb on - strand at 246.995 kb on - strand at 247.040 kb on + strand at 247.057 kb on + strand at 247.058 kb on - strand at 247.161 kb on + strand at 247.162 kb on - strand at 247.162 kb on - strand at 247.207 kb on + strand at 247.208 kb on - strand at 247.208 kb on - strand at 247.214 kb on - strand at 247.258 kb on - strand, within HMPREF1058_RS02250 at 247.261 kb on - strand, within HMPREF1058_RS02250 at 247.262 kb on + strand, within HMPREF1058_RS02250 at 247.263 kb on - strand, within HMPREF1058_RS02250 at 247.263 kb on - strand, within HMPREF1058_RS02250 at 247.267 kb on - strand, within HMPREF1058_RS02250 at 247.276 kb on + strand, within HMPREF1058_RS02250 at 247.276 kb on + strand, within HMPREF1058_RS02250 at 247.277 kb on - strand, within HMPREF1058_RS02250 at 247.322 kb on + strand, within HMPREF1058_RS02250 at 247.322 kb on + strand, within HMPREF1058_RS02250 at 247.322 kb on + strand, within HMPREF1058_RS02250
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3 remove 244,431 + HMPREF1058_RS02270 0.89 -0.6 244,537 - -0.2 244,537 - +0.8 244,540 + -0.9 244,541 - -1.3 244,541 - +0.6 244,543 + -0.2 244,544 - +0.2 244,544 - -0.1 244,577 - -0.1 244,581 + -0.3 244,624 - +0.0 244,632 + +0.2 244,639 - -1.0 244,719 - +0.5 244,719 - -0.7 244,720 + +0.4 244,723 - -0.4 244,756 - -0.5 244,757 + HMPREF1058_RS02265 0.10 +0.9 244,757 + HMPREF1058_RS02265 0.10 +0.0 244,757 + HMPREF1058_RS02265 0.10 -1.9 244,758 - HMPREF1058_RS02265 0.10 +0.4 244,758 - HMPREF1058_RS02265 0.10 -0.3 244,759 + HMPREF1058_RS02265 0.10 -1.4 244,809 + HMPREF1058_RS02265 0.19 +0.0 244,810 - HMPREF1058_RS02265 0.19 +0.6 244,988 - HMPREF1058_RS02265 0.49 -2.0 244,996 - HMPREF1058_RS02265 0.51 +0.7 245,092 + HMPREF1058_RS02265 0.67 +1.3 245,092 + HMPREF1058_RS02265 0.67 +0.5 245,093 - HMPREF1058_RS02265 0.67 -1.9 245,159 + HMPREF1058_RS02265 0.78 +1.5 245,160 - HMPREF1058_RS02265 0.79 -0.5 245,160 - HMPREF1058_RS02265 0.79 +0.0 245,160 - HMPREF1058_RS02265 0.79 -1.2 245,163 + HMPREF1058_RS02265 0.79 +1.8 245,164 - HMPREF1058_RS02265 0.79 +0.2 245,215 - HMPREF1058_RS02265 0.88 -0.2 245,384 + +2.1 245,384 + +0.5 245,411 - +1.9 245,438 + +2.1 245,439 - +0.1 245,440 + +1.2 245,440 + +0.0 245,440 + +2.6 245,447 + +2.7 245,463 + +1.2 245,466 + +2.2 245,467 - +0.1 245,479 - +0.1 245,572 - HMPREF1058_RS02260 0.18 -1.0 245,706 + HMPREF1058_RS02260 0.32 +1.5 245,707 - HMPREF1058_RS02260 0.32 +0.9 245,772 + HMPREF1058_RS02260 0.39 +2.1 245,773 - HMPREF1058_RS02260 0.40 +0.7 245,781 + HMPREF1058_RS02260 0.40 +1.7 245,781 + HMPREF1058_RS02260 0.40 +2.4 245,781 + HMPREF1058_RS02260 0.40 +1.9 245,782 - HMPREF1058_RS02260 0.41 +0.4 245,844 - HMPREF1058_RS02260 0.47 +0.6 245,859 + HMPREF1058_RS02260 0.49 +2.3 245,900 + HMPREF1058_RS02260 0.53 +1.1 245,925 - HMPREF1058_RS02260 0.56 -1.0 246,195 + HMPREF1058_RS02260 0.85 +2.4 246,196 - HMPREF1058_RS02260 0.85 +0.7 246,196 - HMPREF1058_RS02260 0.85 +0.9 246,196 - HMPREF1058_RS02260 0.85 +0.2 246,196 - HMPREF1058_RS02260 0.85 +0.6 246,198 + HMPREF1058_RS02260 0.85 +1.9 246,198 + HMPREF1058_RS02260 0.85 +1.3 246,226 + HMPREF1058_RS02260 0.88 +3.5 246,226 + HMPREF1058_RS02260 0.88 +2.0 246,226 + HMPREF1058_RS02260 0.88 +1.5 246,227 - HMPREF1058_RS02260 0.89 +1.7 246,231 - HMPREF1058_RS02260 0.89 +2.7 246,232 + HMPREF1058_RS02260 0.89 -2.3 246,232 + HMPREF1058_RS02260 0.89 +2.0 246,233 - HMPREF1058_RS02260 0.89 +1.2 246,235 + HMPREF1058_RS02260 0.89 +2.3 246,236 - HMPREF1058_RS02260 0.90 +1.0 246,332 + -0.8 246,334 + +2.2 246,334 + +3.0 246,389 + +1.2 246,447 - +1.3 246,451 + +1.8 246,517 + HMPREF1058_RS02255 0.10 +2.2 246,518 - HMPREF1058_RS02255 0.10 +1.4 246,652 + HMPREF1058_RS02255 0.43 +0.9 246,704 - HMPREF1058_RS02255 0.56 +1.7 246,705 - HMPREF1058_RS02255 0.57 +1.2 246,711 - HMPREF1058_RS02255 0.58 +1.9 246,768 - HMPREF1058_RS02255 0.72 +0.9 246,794 - HMPREF1058_RS02255 0.79 +1.0 246,803 + HMPREF1058_RS02255 0.81 +1.1 246,815 - HMPREF1058_RS02255 0.84 +1.6 246,819 - HMPREF1058_RS02255 0.85 +2.0 246,842 + +0.4 246,843 - +0.7 246,843 - +1.4 246,865 + +3.7 246,887 - +1.6 246,898 - +0.3 246,995 - +1.5 247,040 + +0.4 247,057 + +2.2 247,058 - +2.3 247,161 + +1.6 247,162 - +2.1 247,162 - +2.0 247,207 + +0.9 247,208 - +1.9 247,208 - +2.6 247,214 - +3.1 247,258 - HMPREF1058_RS02250 0.12 +2.3 247,261 - HMPREF1058_RS02250 0.12 +1.8 247,262 + HMPREF1058_RS02250 0.12 +1.9 247,263 - HMPREF1058_RS02250 0.12 +1.3 247,263 - HMPREF1058_RS02250 0.12 +3.1 247,267 - HMPREF1058_RS02250 0.12 +4.2 247,276 + HMPREF1058_RS02250 0.13 +2.0 247,276 + HMPREF1058_RS02250 0.13 -2.1 247,277 - HMPREF1058_RS02250 0.13 +0.8 247,322 + HMPREF1058_RS02250 0.15 +2.5 247,322 + HMPREF1058_RS02250 0.15 +2.2 247,322 + HMPREF1058_RS02250 0.15 +1.8
Or see this region's nucleotide sequence