Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS02255

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS02260 and HMPREF1058_RS02255 are separated by 143 nucleotidesHMPREF1058_RS02255 and HMPREF1058_RS02250 are separated by 158 nucleotides HMPREF1058_RS02260: HMPREF1058_RS02260 - hypothetical protein, at 245,406 to 246,332 _RS02260 HMPREF1058_RS02255: HMPREF1058_RS02255 - DUF3244 domain-containing protein, at 246,476 to 246,880 _RS02255 HMPREF1058_RS02250: HMPREF1058_RS02250 - hypothetical protein, at 247,039 to 248,895 _RS02250 Position (kb) 246 247Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 245.479 kb on - strandat 245.572 kb on - strand, within HMPREF1058_RS02260at 245.706 kb on + strand, within HMPREF1058_RS02260at 245.707 kb on - strand, within HMPREF1058_RS02260at 245.772 kb on + strand, within HMPREF1058_RS02260at 245.773 kb on - strand, within HMPREF1058_RS02260at 245.781 kb on + strand, within HMPREF1058_RS02260at 245.781 kb on + strand, within HMPREF1058_RS02260at 245.781 kb on + strand, within HMPREF1058_RS02260at 245.782 kb on - strand, within HMPREF1058_RS02260at 245.844 kb on - strand, within HMPREF1058_RS02260at 245.859 kb on + strand, within HMPREF1058_RS02260at 245.900 kb on + strand, within HMPREF1058_RS02260at 245.925 kb on - strand, within HMPREF1058_RS02260at 246.195 kb on + strand, within HMPREF1058_RS02260at 246.196 kb on - strand, within HMPREF1058_RS02260at 246.196 kb on - strand, within HMPREF1058_RS02260at 246.196 kb on - strand, within HMPREF1058_RS02260at 246.196 kb on - strand, within HMPREF1058_RS02260at 246.198 kb on + strand, within HMPREF1058_RS02260at 246.198 kb on + strand, within HMPREF1058_RS02260at 246.226 kb on + strand, within HMPREF1058_RS02260at 246.226 kb on + strand, within HMPREF1058_RS02260at 246.226 kb on + strand, within HMPREF1058_RS02260at 246.227 kb on - strand, within HMPREF1058_RS02260at 246.231 kb on - strand, within HMPREF1058_RS02260at 246.232 kb on + strand, within HMPREF1058_RS02260at 246.232 kb on + strand, within HMPREF1058_RS02260at 246.233 kb on - strand, within HMPREF1058_RS02260at 246.235 kb on + strand, within HMPREF1058_RS02260at 246.236 kb on - strand, within HMPREF1058_RS02260at 246.332 kb on + strandat 246.334 kb on + strandat 246.334 kb on + strandat 246.389 kb on + strandat 246.447 kb on - strandat 246.451 kb on + strandat 246.517 kb on + strand, within HMPREF1058_RS02255at 246.518 kb on - strand, within HMPREF1058_RS02255at 246.652 kb on + strand, within HMPREF1058_RS02255at 246.704 kb on - strand, within HMPREF1058_RS02255at 246.705 kb on - strand, within HMPREF1058_RS02255at 246.711 kb on - strand, within HMPREF1058_RS02255at 246.768 kb on - strand, within HMPREF1058_RS02255at 246.794 kb on - strand, within HMPREF1058_RS02255at 246.803 kb on + strand, within HMPREF1058_RS02255at 246.815 kb on - strand, within HMPREF1058_RS02255at 246.819 kb on - strand, within HMPREF1058_RS02255at 246.842 kb on + strandat 246.843 kb on - strandat 246.843 kb on - strandat 246.865 kb on + strandat 246.887 kb on - strandat 246.898 kb on - strandat 246.995 kb on - strandat 247.040 kb on + strandat 247.057 kb on + strandat 247.058 kb on - strandat 247.161 kb on + strandat 247.162 kb on - strandat 247.162 kb on - strandat 247.207 kb on + strandat 247.208 kb on - strandat 247.208 kb on - strandat 247.214 kb on - strandat 247.258 kb on - strand, within HMPREF1058_RS02250at 247.261 kb on - strand, within HMPREF1058_RS02250at 247.262 kb on + strand, within HMPREF1058_RS02250at 247.263 kb on - strand, within HMPREF1058_RS02250at 247.263 kb on - strand, within HMPREF1058_RS02250at 247.267 kb on - strand, within HMPREF1058_RS02250at 247.276 kb on + strand, within HMPREF1058_RS02250at 247.276 kb on + strand, within HMPREF1058_RS02250at 247.277 kb on - strand, within HMPREF1058_RS02250at 247.322 kb on + strand, within HMPREF1058_RS02250at 247.322 kb on + strand, within HMPREF1058_RS02250at 247.322 kb on + strand, within HMPREF1058_RS02250at 247.403 kb on + strand, within HMPREF1058_RS02250at 247.432 kb on - strand, within HMPREF1058_RS02250at 247.473 kb on - strand, within HMPREF1058_RS02250at 247.480 kb on + strand, within HMPREF1058_RS02250at 247.480 kb on + strand, within HMPREF1058_RS02250at 247.480 kb on + strand, within HMPREF1058_RS02250at 247.481 kb on - strand, within HMPREF1058_RS02250at 247.481 kb on - strand, within HMPREF1058_RS02250at 247.498 kb on - strand, within HMPREF1058_RS02250at 247.547 kb on - strand, within HMPREF1058_RS02250at 247.576 kb on + strand, within HMPREF1058_RS02250at 247.637 kb on - strand, within HMPREF1058_RS02250at 247.736 kb on - strand, within HMPREF1058_RS02250at 247.736 kb on - strand, within HMPREF1058_RS02250at 247.739 kb on + strand, within HMPREF1058_RS02250at 247.747 kb on + strand, within HMPREF1058_RS02250at 247.748 kb on - strand, within HMPREF1058_RS02250at 247.874 kb on - strand, within HMPREF1058_RS02250

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
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245,479 - +0.1
245,572 - HMPREF1058_RS02260 0.18 -1.0
245,706 + HMPREF1058_RS02260 0.32 +1.5
245,707 - HMPREF1058_RS02260 0.32 +0.9
245,772 + HMPREF1058_RS02260 0.39 +2.1
245,773 - HMPREF1058_RS02260 0.40 +0.7
245,781 + HMPREF1058_RS02260 0.40 +1.7
245,781 + HMPREF1058_RS02260 0.40 +2.4
245,781 + HMPREF1058_RS02260 0.40 +1.9
245,782 - HMPREF1058_RS02260 0.41 +0.4
245,844 - HMPREF1058_RS02260 0.47 +0.6
245,859 + HMPREF1058_RS02260 0.49 +2.3
245,900 + HMPREF1058_RS02260 0.53 +1.1
245,925 - HMPREF1058_RS02260 0.56 -1.0
246,195 + HMPREF1058_RS02260 0.85 +2.4
246,196 - HMPREF1058_RS02260 0.85 +0.7
246,196 - HMPREF1058_RS02260 0.85 +0.9
246,196 - HMPREF1058_RS02260 0.85 +0.2
246,196 - HMPREF1058_RS02260 0.85 +0.6
246,198 + HMPREF1058_RS02260 0.85 +1.9
246,198 + HMPREF1058_RS02260 0.85 +1.3
246,226 + HMPREF1058_RS02260 0.88 +3.5
246,226 + HMPREF1058_RS02260 0.88 +2.0
246,226 + HMPREF1058_RS02260 0.88 +1.5
246,227 - HMPREF1058_RS02260 0.89 +1.7
246,231 - HMPREF1058_RS02260 0.89 +2.7
246,232 + HMPREF1058_RS02260 0.89 -2.3
246,232 + HMPREF1058_RS02260 0.89 +2.0
246,233 - HMPREF1058_RS02260 0.89 +1.2
246,235 + HMPREF1058_RS02260 0.89 +2.3
246,236 - HMPREF1058_RS02260 0.90 +1.0
246,332 + -0.8
246,334 + +2.2
246,334 + +3.0
246,389 + +1.2
246,447 - +1.3
246,451 + +1.8
246,517 + HMPREF1058_RS02255 0.10 +2.2
246,518 - HMPREF1058_RS02255 0.10 +1.4
246,652 + HMPREF1058_RS02255 0.43 +0.9
246,704 - HMPREF1058_RS02255 0.56 +1.7
246,705 - HMPREF1058_RS02255 0.57 +1.2
246,711 - HMPREF1058_RS02255 0.58 +1.9
246,768 - HMPREF1058_RS02255 0.72 +0.9
246,794 - HMPREF1058_RS02255 0.79 +1.0
246,803 + HMPREF1058_RS02255 0.81 +1.1
246,815 - HMPREF1058_RS02255 0.84 +1.6
246,819 - HMPREF1058_RS02255 0.85 +2.0
246,842 + +0.4
246,843 - +0.7
246,843 - +1.4
246,865 + +3.7
246,887 - +1.6
246,898 - +0.3
246,995 - +1.5
247,040 + +0.4
247,057 + +2.2
247,058 - +2.3
247,161 + +1.6
247,162 - +2.1
247,162 - +2.0
247,207 + +0.9
247,208 - +1.9
247,208 - +2.6
247,214 - +3.1
247,258 - HMPREF1058_RS02250 0.12 +2.3
247,261 - HMPREF1058_RS02250 0.12 +1.8
247,262 + HMPREF1058_RS02250 0.12 +1.9
247,263 - HMPREF1058_RS02250 0.12 +1.3
247,263 - HMPREF1058_RS02250 0.12 +3.1
247,267 - HMPREF1058_RS02250 0.12 +4.2
247,276 + HMPREF1058_RS02250 0.13 +2.0
247,276 + HMPREF1058_RS02250 0.13 -2.1
247,277 - HMPREF1058_RS02250 0.13 +0.8
247,322 + HMPREF1058_RS02250 0.15 +2.5
247,322 + HMPREF1058_RS02250 0.15 +2.2
247,322 + HMPREF1058_RS02250 0.15 +1.8
247,403 + HMPREF1058_RS02250 0.20 +1.3
247,432 - HMPREF1058_RS02250 0.21 +2.3
247,473 - HMPREF1058_RS02250 0.23 +1.6
247,480 + HMPREF1058_RS02250 0.24 +2.2
247,480 + HMPREF1058_RS02250 0.24 +2.1
247,480 + HMPREF1058_RS02250 0.24 +1.4
247,481 - HMPREF1058_RS02250 0.24 +1.4
247,481 - HMPREF1058_RS02250 0.24 +2.0
247,498 - HMPREF1058_RS02250 0.25 +2.7
247,547 - HMPREF1058_RS02250 0.27 +0.5
247,576 + HMPREF1058_RS02250 0.29 +0.6
247,637 - HMPREF1058_RS02250 0.32 +0.5
247,736 - HMPREF1058_RS02250 0.38 +1.0
247,736 - HMPREF1058_RS02250 0.38 +2.1
247,739 + HMPREF1058_RS02250 0.38 +0.6
247,747 + HMPREF1058_RS02250 0.38 +2.7
247,748 - HMPREF1058_RS02250 0.38 -1.6
247,874 - HMPREF1058_RS02250 0.45 +2.0

Or see this region's nucleotide sequence