Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS02085

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS02095 and HMPREF1058_RS02090 are separated by 23 nucleotidesHMPREF1058_RS02090 and HMPREF1058_RS02085 are separated by 29 nucleotidesHMPREF1058_RS02085 and HMPREF1058_RS02080 are separated by 36 nucleotides HMPREF1058_RS02095: HMPREF1058_RS02095 - efflux transporter outer membrane subunit, at 291,046 to 292,431 _RS02095 HMPREF1058_RS02090: HMPREF1058_RS02090 - acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase, at 292,455 to 293,222 _RS02090 HMPREF1058_RS02085: HMPREF1058_RS02085 - TetR/AcrR family transcriptional regulator, at 293,252 to 293,905 _RS02085 HMPREF1058_RS02080: HMPREF1058_RS02080 - TolC family protein, at 293,942 to 295,267 _RS02080 Position (kb) 293 294Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 292.380 kb on + strandat 292.429 kb on + strandat 292.448 kb on + strandat 292.455 kb on - strandat 292.460 kb on + strandat 292.474 kb on - strandat 292.474 kb on - strandat 292.511 kb on + strandat 292.536 kb on - strand, within HMPREF1058_RS02090at 292.549 kb on + strand, within HMPREF1058_RS02090at 292.560 kb on - strand, within HMPREF1058_RS02090at 292.564 kb on + strand, within HMPREF1058_RS02090at 292.564 kb on + strand, within HMPREF1058_RS02090at 292.564 kb on + strand, within HMPREF1058_RS02090at 292.564 kb on + strand, within HMPREF1058_RS02090at 292.568 kb on + strand, within HMPREF1058_RS02090at 292.569 kb on - strand, within HMPREF1058_RS02090at 292.624 kb on - strand, within HMPREF1058_RS02090at 292.637 kb on - strand, within HMPREF1058_RS02090at 292.667 kb on + strand, within HMPREF1058_RS02090at 292.693 kb on + strand, within HMPREF1058_RS02090at 292.693 kb on + strand, within HMPREF1058_RS02090at 292.698 kb on - strand, within HMPREF1058_RS02090at 292.700 kb on + strand, within HMPREF1058_RS02090at 292.704 kb on - strand, within HMPREF1058_RS02090at 292.782 kb on - strand, within HMPREF1058_RS02090at 292.782 kb on - strand, within HMPREF1058_RS02090at 292.799 kb on + strand, within HMPREF1058_RS02090at 292.799 kb on + strand, within HMPREF1058_RS02090at 292.833 kb on - strandat 292.833 kb on - strand, within HMPREF1058_RS02090at 292.886 kb on + strand, within HMPREF1058_RS02090at 292.893 kb on - strand, within HMPREF1058_RS02090at 292.904 kb on - strand, within HMPREF1058_RS02090at 292.935 kb on + strand, within HMPREF1058_RS02090at 292.936 kb on - strand, within HMPREF1058_RS02090at 292.964 kb on + strand, within HMPREF1058_RS02090at 293.076 kb on - strand, within HMPREF1058_RS02090at 293.077 kb on + strand, within HMPREF1058_RS02090at 293.077 kb on + strand, within HMPREF1058_RS02090at 293.094 kb on - strand, within HMPREF1058_RS02090at 293.095 kb on + strand, within HMPREF1058_RS02090at 293.101 kb on - strand, within HMPREF1058_RS02090at 293.112 kb on - strand, within HMPREF1058_RS02090at 293.112 kb on - strand, within HMPREF1058_RS02090at 293.112 kb on - strand, within HMPREF1058_RS02090at 293.118 kb on - strand, within HMPREF1058_RS02090at 293.202 kb on - strandat 293.220 kb on + strandat 293.242 kb on + strandat 293.248 kb on - strandat 293.380 kb on - strand, within HMPREF1058_RS02085at 293.383 kb on + strand, within HMPREF1058_RS02085at 293.383 kb on + strand, within HMPREF1058_RS02085at 293.383 kb on + strand, within HMPREF1058_RS02085at 293.383 kb on + strand, within HMPREF1058_RS02085at 293.389 kb on + strand, within HMPREF1058_RS02085at 293.395 kb on + strand, within HMPREF1058_RS02085at 293.451 kb on + strand, within HMPREF1058_RS02085at 293.452 kb on - strand, within HMPREF1058_RS02085at 293.452 kb on - strand, within HMPREF1058_RS02085at 293.474 kb on + strand, within HMPREF1058_RS02085at 293.474 kb on + strand, within HMPREF1058_RS02085at 293.475 kb on - strand, within HMPREF1058_RS02085at 293.475 kb on - strand, within HMPREF1058_RS02085at 293.476 kb on + strand, within HMPREF1058_RS02085at 293.605 kb on - strand, within HMPREF1058_RS02085at 293.710 kb on + strand, within HMPREF1058_RS02085at 293.711 kb on - strand, within HMPREF1058_RS02085at 293.727 kb on + strand, within HMPREF1058_RS02085at 293.728 kb on - strand, within HMPREF1058_RS02085at 293.763 kb on + strand, within HMPREF1058_RS02085at 293.805 kb on + strand, within HMPREF1058_RS02085at 293.806 kb on - strand, within HMPREF1058_RS02085at 293.806 kb on - strand, within HMPREF1058_RS02085at 293.815 kb on + strand, within HMPREF1058_RS02085at 293.815 kb on + strand, within HMPREF1058_RS02085at 293.815 kb on + strand, within HMPREF1058_RS02085at 293.816 kb on - strand, within HMPREF1058_RS02085at 293.816 kb on - strand, within HMPREF1058_RS02085at 293.816 kb on - strand, within HMPREF1058_RS02085at 293.893 kb on + strandat 293.893 kb on + strandat 293.893 kb on + strandat 293.894 kb on - strandat 293.898 kb on - strandat 293.898 kb on - strandat 293.914 kb on + strandat 293.927 kb on - strandat 293.991 kb on + strandat 293.991 kb on + strandat 294.131 kb on + strand, within HMPREF1058_RS02080at 294.238 kb on + strand, within HMPREF1058_RS02080at 294.238 kb on + strand, within HMPREF1058_RS02080at 294.238 kb on + strand, within HMPREF1058_RS02080at 294.238 kb on + strand, within HMPREF1058_RS02080at 294.242 kb on + strand, within HMPREF1058_RS02080at 294.242 kb on + strand, within HMPREF1058_RS02080at 294.242 kb on + strand, within HMPREF1058_RS02080at 294.243 kb on - strand, within HMPREF1058_RS02080at 294.243 kb on - strand, within HMPREF1058_RS02080at 294.243 kb on - strand, within HMPREF1058_RS02080at 294.244 kb on + strand, within HMPREF1058_RS02080at 294.313 kb on + strand, within HMPREF1058_RS02080at 294.314 kb on - strand, within HMPREF1058_RS02080at 294.440 kb on - strand, within HMPREF1058_RS02080at 294.454 kb on + strand, within HMPREF1058_RS02080at 294.458 kb on + strand, within HMPREF1058_RS02080at 294.458 kb on + strand, within HMPREF1058_RS02080at 294.460 kb on + strand, within HMPREF1058_RS02080at 294.460 kb on + strand, within HMPREF1058_RS02080at 294.461 kb on - strand, within HMPREF1058_RS02080at 294.475 kb on + strand, within HMPREF1058_RS02080at 294.476 kb on - strand, within HMPREF1058_RS02080at 294.480 kb on - strand, within HMPREF1058_RS02080at 294.480 kb on - strand, within HMPREF1058_RS02080at 294.515 kb on - strand, within HMPREF1058_RS02080at 294.667 kb on + strand, within HMPREF1058_RS02080at 294.713 kb on - strand, within HMPREF1058_RS02080at 294.779 kb on - strand, within HMPREF1058_RS02080at 294.816 kb on - strand, within HMPREF1058_RS02080at 294.817 kb on + strand, within HMPREF1058_RS02080at 294.818 kb on - strand, within HMPREF1058_RS02080at 294.818 kb on - strand, within HMPREF1058_RS02080at 294.818 kb on - strand, within HMPREF1058_RS02080at 294.821 kb on + strand, within HMPREF1058_RS02080at 294.821 kb on + strand, within HMPREF1058_RS02080at 294.822 kb on - strand, within HMPREF1058_RS02080at 294.824 kb on - strand, within HMPREF1058_RS02080at 294.877 kb on + strand, within HMPREF1058_RS02080

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
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292,380 + -1.1
292,429 + -1.7
292,448 + +0.2
292,455 - -2.1
292,460 + +0.5
292,474 - -1.8
292,474 - -0.6
292,511 + -1.0
292,536 - HMPREF1058_RS02090 0.11 +0.2
292,549 + HMPREF1058_RS02090 0.12 -0.6
292,560 - HMPREF1058_RS02090 0.14 -0.1
292,564 + HMPREF1058_RS02090 0.14 +0.0
292,564 + HMPREF1058_RS02090 0.14 -1.0
292,564 + HMPREF1058_RS02090 0.14 -0.4
292,564 + HMPREF1058_RS02090 0.14 +0.6
292,568 + HMPREF1058_RS02090 0.15 +1.8
292,569 - HMPREF1058_RS02090 0.15 -0.5
292,624 - HMPREF1058_RS02090 0.22 +0.0
292,637 - HMPREF1058_RS02090 0.24 -1.3
292,667 + HMPREF1058_RS02090 0.28 -1.0
292,693 + HMPREF1058_RS02090 0.31 -0.0
292,693 + HMPREF1058_RS02090 0.31 -0.0
292,698 - HMPREF1058_RS02090 0.32 -1.0
292,700 + HMPREF1058_RS02090 0.32 +2.4
292,704 - HMPREF1058_RS02090 0.32 -1.1
292,782 - HMPREF1058_RS02090 0.43 +0.3
292,782 - HMPREF1058_RS02090 0.43 +0.6
292,799 + HMPREF1058_RS02090 0.45 +0.3
292,799 + HMPREF1058_RS02090 0.45 -2.1
292,833 - -0.6
292,833 - HMPREF1058_RS02090 0.49 -0.6
292,886 + HMPREF1058_RS02090 0.56 -1.1
292,893 - HMPREF1058_RS02090 0.57 +0.5
292,904 - HMPREF1058_RS02090 0.58 +0.3
292,935 + HMPREF1058_RS02090 0.62 +0.0
292,936 - HMPREF1058_RS02090 0.63 -0.5
292,964 + HMPREF1058_RS02090 0.66 +0.3
293,076 - HMPREF1058_RS02090 0.81 -1.4
293,077 + HMPREF1058_RS02090 0.81 -1.8
293,077 + HMPREF1058_RS02090 0.81 -0.2
293,094 - HMPREF1058_RS02090 0.83 -0.2
293,095 + HMPREF1058_RS02090 0.83 -1.6
293,101 - HMPREF1058_RS02090 0.84 +1.0
293,112 - HMPREF1058_RS02090 0.86 +1.0
293,112 - HMPREF1058_RS02090 0.86 +0.3
293,112 - HMPREF1058_RS02090 0.86 +0.5
293,118 - HMPREF1058_RS02090 0.86 -2.0
293,202 - -0.0
293,220 + -1.0
293,242 + +0.6
293,248 - +1.6
293,380 - HMPREF1058_RS02085 0.20 +0.4
293,383 + HMPREF1058_RS02085 0.20 +0.5
293,383 + HMPREF1058_RS02085 0.20 +0.6
293,383 + HMPREF1058_RS02085 0.20 +0.1
293,383 + HMPREF1058_RS02085 0.20 -0.4
293,389 + HMPREF1058_RS02085 0.21 +0.5
293,395 + HMPREF1058_RS02085 0.22 -0.2
293,451 + HMPREF1058_RS02085 0.30 +0.7
293,452 - HMPREF1058_RS02085 0.31 +0.6
293,452 - HMPREF1058_RS02085 0.31 +0.3
293,474 + HMPREF1058_RS02085 0.34 -0.6
293,474 + HMPREF1058_RS02085 0.34 +0.5
293,475 - HMPREF1058_RS02085 0.34 -0.6
293,475 - HMPREF1058_RS02085 0.34 +1.1
293,476 + HMPREF1058_RS02085 0.34 +0.6
293,605 - HMPREF1058_RS02085 0.54 -1.4
293,710 + HMPREF1058_RS02085 0.70 +0.8
293,711 - HMPREF1058_RS02085 0.70 +1.1
293,727 + HMPREF1058_RS02085 0.73 +0.6
293,728 - HMPREF1058_RS02085 0.73 -0.9
293,763 + HMPREF1058_RS02085 0.78 +1.6
293,805 + HMPREF1058_RS02085 0.85 +0.6
293,806 - HMPREF1058_RS02085 0.85 -1.0
293,806 - HMPREF1058_RS02085 0.85 +0.2
293,815 + HMPREF1058_RS02085 0.86 +0.2
293,815 + HMPREF1058_RS02085 0.86 +2.7
293,815 + HMPREF1058_RS02085 0.86 +0.6
293,816 - HMPREF1058_RS02085 0.86 -1.2
293,816 - HMPREF1058_RS02085 0.86 +1.5
293,816 - HMPREF1058_RS02085 0.86 +1.0
293,893 + +1.0
293,893 + +1.4
293,893 + +0.9
293,894 - -1.1
293,898 - -3.4
293,898 - +0.1
293,914 + +0.5
293,927 - -0.4
293,991 + -0.2
293,991 + +0.1
294,131 + HMPREF1058_RS02080 0.14 -0.2
294,238 + HMPREF1058_RS02080 0.22 -2.1
294,238 + HMPREF1058_RS02080 0.22 +0.4
294,238 + HMPREF1058_RS02080 0.22 -1.5
294,238 + HMPREF1058_RS02080 0.22 -2.3
294,242 + HMPREF1058_RS02080 0.23 +0.0
294,242 + HMPREF1058_RS02080 0.23 +0.0
294,242 + HMPREF1058_RS02080 0.23 -0.9
294,243 - HMPREF1058_RS02080 0.23 -0.7
294,243 - HMPREF1058_RS02080 0.23 -0.5
294,243 - HMPREF1058_RS02080 0.23 -0.2
294,244 + HMPREF1058_RS02080 0.23 -2.0
294,313 + HMPREF1058_RS02080 0.28 -0.4
294,314 - HMPREF1058_RS02080 0.28 -0.2
294,440 - HMPREF1058_RS02080 0.38 -0.6
294,454 + HMPREF1058_RS02080 0.39 +0.0
294,458 + HMPREF1058_RS02080 0.39 -0.7
294,458 + HMPREF1058_RS02080 0.39 -0.5
294,460 + HMPREF1058_RS02080 0.39 -2.0
294,460 + HMPREF1058_RS02080 0.39 -0.1
294,461 - HMPREF1058_RS02080 0.39 -0.8
294,475 + HMPREF1058_RS02080 0.40 -0.9
294,476 - HMPREF1058_RS02080 0.40 -0.3
294,480 - HMPREF1058_RS02080 0.41 -0.4
294,480 - HMPREF1058_RS02080 0.41 -0.1
294,515 - HMPREF1058_RS02080 0.43 -1.9
294,667 + HMPREF1058_RS02080 0.55 +0.0
294,713 - HMPREF1058_RS02080 0.58 -0.9
294,779 - HMPREF1058_RS02080 0.63 -0.6
294,816 - HMPREF1058_RS02080 0.66 -0.2
294,817 + HMPREF1058_RS02080 0.66 -0.1
294,818 - HMPREF1058_RS02080 0.66 -1.3
294,818 - HMPREF1058_RS02080 0.66 +0.8
294,818 - HMPREF1058_RS02080 0.66 +1.0
294,821 + HMPREF1058_RS02080 0.66 -0.2
294,821 + HMPREF1058_RS02080 0.66 +0.3
294,822 - HMPREF1058_RS02080 0.66 -0.2
294,824 - HMPREF1058_RS02080 0.67 -2.1
294,877 + HMPREF1058_RS02080 0.71 -0.0

Or see this region's nucleotide sequence