Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01535 and HMPREF1058_RS01530 are separated by 5 nucleotides HMPREF1058_RS01530 and HMPREF1058_RS01525 are separated by 325 nucleotides
HMPREF1058_RS01535: HMPREF1058_RS01535 - flavin reductase family protein, at 99,802 to 100,362
_RS01535
HMPREF1058_RS01530: HMPREF1058_RS01530 - NAD(P)H-dependent oxidoreductase, at 100,368 to 100,904
_RS01530
HMPREF1058_RS01525: HMPREF1058_RS01525 - helix-turn-helix transcriptional regulator, at 101,230 to 102,138
_RS01525
Position (kb) 100
101 Strain fitness (log2 ratio) -2
-1
0
1
2 at 99.470 kb on + strand at 99.497 kb on + strand at 99.497 kb on + strand at 99.498 kb on - strand at 99.498 kb on - strand at 99.539 kb on + strand at 99.661 kb on + strand at 99.662 kb on - strand at 99.785 kb on + strand at 99.786 kb on - strand at 99.895 kb on - strand, within HMPREF1058_RS01535 at 99.943 kb on + strand, within HMPREF1058_RS01535 at 99.958 kb on + strand, within HMPREF1058_RS01535 at 100.299 kb on - strand, within HMPREF1058_RS01535 at 100.370 kb on - strand at 100.597 kb on + strand, within HMPREF1058_RS01530 at 100.597 kb on + strand, within HMPREF1058_RS01530 at 100.597 kb on + strand, within HMPREF1058_RS01530 at 100.604 kb on + strand, within HMPREF1058_RS01530 at 100.605 kb on - strand, within HMPREF1058_RS01530 at 100.720 kb on + strand, within HMPREF1058_RS01530 at 100.721 kb on - strand, within HMPREF1058_RS01530 at 100.721 kb on - strand, within HMPREF1058_RS01530 at 100.813 kb on + strand, within HMPREF1058_RS01530 at 100.819 kb on - strand, within HMPREF1058_RS01530 at 100.860 kb on - strand at 100.911 kb on + strand at 100.917 kb on - strand at 100.931 kb on + strand at 100.946 kb on + strand at 100.968 kb on + strand at 100.969 kb on - strand at 101.033 kb on + strand at 101.033 kb on + strand at 101.035 kb on + strand at 101.035 kb on + strand at 101.036 kb on - strand at 101.108 kb on - strand at 101.108 kb on - strand at 101.108 kb on - strand at 101.214 kb on + strand at 101.240 kb on + strand at 101.268 kb on + strand at 101.269 kb on - strand at 101.348 kb on - strand, within HMPREF1058_RS01525 at 101.348 kb on - strand, within HMPREF1058_RS01525 at 101.413 kb on + strand, within HMPREF1058_RS01525 at 101.414 kb on - strand, within HMPREF1058_RS01525 at 101.643 kb on + strand, within HMPREF1058_RS01525 at 101.643 kb on + strand, within HMPREF1058_RS01525 at 101.643 kb on + strand, within HMPREF1058_RS01525 at 101.700 kb on + strand, within HMPREF1058_RS01525 at 101.701 kb on - strand, within HMPREF1058_RS01525 at 101.703 kb on + strand, within HMPREF1058_RS01525 at 101.722 kb on + strand, within HMPREF1058_RS01525 at 101.723 kb on - strand, within HMPREF1058_RS01525 at 101.723 kb on - strand, within HMPREF1058_RS01525 at 101.726 kb on + strand, within HMPREF1058_RS01525 at 101.727 kb on - strand, within HMPREF1058_RS01525 at 101.727 kb on - strand, within HMPREF1058_RS01525 at 101.759 kb on - strand, within HMPREF1058_RS01525
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3 remove 99,470 + -2.2 99,497 + -0.2 99,497 + -1.2 99,498 - +0.1 99,498 - +0.5 99,539 + -0.5 99,661 + +1.3 99,662 - +0.3 99,785 + -0.6 99,786 - -0.7 99,895 - HMPREF1058_RS01535 0.17 -0.0 99,943 + HMPREF1058_RS01535 0.25 -0.3 99,958 + HMPREF1058_RS01535 0.28 -0.0 100,299 - HMPREF1058_RS01535 0.89 +0.1 100,370 - -0.3 100,597 + HMPREF1058_RS01530 0.43 -1.0 100,597 + HMPREF1058_RS01530 0.43 +0.0 100,597 + HMPREF1058_RS01530 0.43 +1.6 100,604 + HMPREF1058_RS01530 0.44 +1.3 100,605 - HMPREF1058_RS01530 0.44 +2.4 100,720 + HMPREF1058_RS01530 0.66 -2.5 100,721 - HMPREF1058_RS01530 0.66 +1.3 100,721 - HMPREF1058_RS01530 0.66 +1.1 100,813 + HMPREF1058_RS01530 0.83 -0.1 100,819 - HMPREF1058_RS01530 0.84 -1.6 100,860 - -1.6 100,911 + -2.5 100,917 - +0.2 100,931 + -0.7 100,946 + +0.2 100,968 + +1.7 100,969 - +0.2 101,033 + +0.5 101,033 + +0.5 101,035 + +1.5 101,035 + +0.4 101,036 - +0.0 101,108 - -0.0 101,108 - -1.6 101,108 - -0.4 101,214 + -0.5 101,240 + +1.0 101,268 + -1.0 101,269 - -0.3 101,348 - HMPREF1058_RS01525 0.13 -0.4 101,348 - HMPREF1058_RS01525 0.13 +0.3 101,413 + HMPREF1058_RS01525 0.20 +0.7 101,414 - HMPREF1058_RS01525 0.20 -1.7 101,643 + HMPREF1058_RS01525 0.45 -1.4 101,643 + HMPREF1058_RS01525 0.45 -1.4 101,643 + HMPREF1058_RS01525 0.45 +1.3 101,700 + HMPREF1058_RS01525 0.52 -0.1 101,701 - HMPREF1058_RS01525 0.52 +0.7 101,703 + HMPREF1058_RS01525 0.52 +0.1 101,722 + HMPREF1058_RS01525 0.54 +0.4 101,723 - HMPREF1058_RS01525 0.54 +0.1 101,723 - HMPREF1058_RS01525 0.54 +0.3 101,726 + HMPREF1058_RS01525 0.55 +0.4 101,727 - HMPREF1058_RS01525 0.55 -0.1 101,727 - HMPREF1058_RS01525 0.55 -0.2 101,759 - HMPREF1058_RS01525 0.58 +0.6
Or see this region's nucleotide sequence