Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS01330

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS01340 and HMPREF1058_RS01330 are separated by 966 nucleotidesHMPREF1058_RS01330 and HMPREF1058_RS01325 are separated by 397 nucleotides HMPREF1058_RS01340: HMPREF1058_RS01340 - hypothetical protein, at 150,460 to 150,873 _RS01340 HMPREF1058_RS01330: HMPREF1058_RS01330 - hypothetical protein, at 151,840 to 153,093 _RS01330 HMPREF1058_RS01325: HMPREF1058_RS01325 - RagB/SusD family nutrient uptake outer membrane protein, at 153,491 to 155,026 _RS01325 Position (kb) 151 152 153 154Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 150.851 kb on + strandat 150.852 kb on - strandat 150.875 kb on - strandat 150.889 kb on - strandat 150.922 kb on + strandat 150.937 kb on + strandat 150.949 kb on - strandat 150.981 kb on + strandat 150.981 kb on + strandat 151.013 kb on + strandat 151.015 kb on + strandat 151.016 kb on - strandat 151.070 kb on + strandat 151.071 kb on - strandat 151.109 kb on - strandat 151.291 kb on + strandat 151.291 kb on + strandat 151.312 kb on + strandat 151.312 kb on + strandat 151.332 kb on + strandat 151.333 kb on - strandat 151.385 kb on + strandat 151.386 kb on - strandat 151.388 kb on - strandat 151.398 kb on + strandat 151.474 kb on + strandat 151.474 kb on + strandat 151.474 kb on + strandat 151.475 kb on - strandat 151.534 kb on - strandat 151.535 kb on + strandat 151.536 kb on - strandat 151.536 kb on - strandat 151.621 kb on - strandat 151.621 kb on - strandat 151.622 kb on + strandat 151.623 kb on - strandat 151.628 kb on + strandat 151.740 kb on + strandat 151.833 kb on - strandat 151.841 kb on + strandat 151.841 kb on + strandat 151.865 kb on - strandat 151.882 kb on + strandat 151.951 kb on + strandat 151.952 kb on - strandat 151.956 kb on + strandat 151.957 kb on - strandat 151.958 kb on + strandat 151.959 kb on - strandat 151.959 kb on - strandat 151.983 kb on + strand, within HMPREF1058_RS01330at 152.011 kb on + strandat 152.052 kb on + strand, within HMPREF1058_RS01330at 152.054 kb on + strand, within HMPREF1058_RS01330at 152.106 kb on - strand, within HMPREF1058_RS01330at 152.140 kb on + strand, within HMPREF1058_RS01330at 152.141 kb on - strand, within HMPREF1058_RS01330at 152.206 kb on + strand, within HMPREF1058_RS01330at 152.207 kb on - strand, within HMPREF1058_RS01330at 152.208 kb on + strand, within HMPREF1058_RS01330at 152.286 kb on + strand, within HMPREF1058_RS01330at 152.293 kb on + strand, within HMPREF1058_RS01330at 152.293 kb on + strand, within HMPREF1058_RS01330at 152.422 kb on - strand, within HMPREF1058_RS01330at 152.463 kb on + strand, within HMPREF1058_RS01330at 152.571 kb on - strand, within HMPREF1058_RS01330at 152.572 kb on + strand, within HMPREF1058_RS01330at 152.572 kb on + strand, within HMPREF1058_RS01330at 152.573 kb on - strand, within HMPREF1058_RS01330at 152.573 kb on - strand, within HMPREF1058_RS01330at 152.576 kb on - strand, within HMPREF1058_RS01330at 152.686 kb on - strand, within HMPREF1058_RS01330at 152.751 kb on - strand, within HMPREF1058_RS01330at 152.755 kb on + strand, within HMPREF1058_RS01330at 152.891 kb on + strand, within HMPREF1058_RS01330at 152.915 kb on - strand, within HMPREF1058_RS01330at 152.972 kb on - strandat 152.975 kb on + strandat 152.982 kb on + strandat 153.069 kb on - strandat 153.119 kb on + strandat 153.120 kb on - strandat 153.120 kb on - strandat 153.224 kb on + strandat 153.271 kb on + strandat 153.420 kb on + strandat 153.454 kb on + strandat 153.518 kb on + strandat 153.704 kb on + strand, within HMPREF1058_RS01325at 153.704 kb on + strand, within HMPREF1058_RS01325at 153.714 kb on - strand, within HMPREF1058_RS01325at 153.751 kb on - strand, within HMPREF1058_RS01325at 153.794 kb on + strand, within HMPREF1058_RS01325at 153.846 kb on - strand, within HMPREF1058_RS01325at 153.846 kb on - strand, within HMPREF1058_RS01325at 153.871 kb on - strand, within HMPREF1058_RS01325at 153.880 kb on - strand, within HMPREF1058_RS01325at 153.925 kb on - strand, within HMPREF1058_RS01325at 153.931 kb on - strand, within HMPREF1058_RS01325at 153.955 kb on - strand, within HMPREF1058_RS01325at 154.018 kb on + strand, within HMPREF1058_RS01325at 154.018 kb on + strand, within HMPREF1058_RS01325

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
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150,851 + +0.5
150,852 - +0.1
150,875 - -0.1
150,889 - -1.0
150,922 + -0.9
150,937 + -0.7
150,949 - -1.2
150,981 + +0.3
150,981 + +0.1
151,013 + +0.6
151,015 + +0.3
151,016 - +0.7
151,070 + -1.0
151,071 - +0.3
151,109 - -1.5
151,291 + -2.2
151,291 + -2.9
151,312 + -2.7
151,312 + +0.6
151,332 + +0.3
151,333 - -1.3
151,385 + -0.5
151,386 - -0.5
151,388 - +0.1
151,398 + +0.4
151,474 + +0.0
151,474 + -0.1
151,474 + +0.6
151,475 - +0.1
151,534 - -1.0
151,535 + -1.0
151,536 - -0.0
151,536 - +0.5
151,621 - +0.7
151,621 - +0.5
151,622 + -0.4
151,623 - +0.3
151,628 + -1.2
151,740 + +0.3
151,833 - -1.0
151,841 + +0.4
151,841 + -0.6
151,865 - +0.1
151,882 + -0.2
151,951 + -1.0
151,952 - -0.4
151,956 + +0.5
151,957 - -0.3
151,958 + +0.1
151,959 - +0.2
151,959 - -0.7
151,983 + HMPREF1058_RS01330 0.11 +0.2
152,011 + -1.0
152,052 + HMPREF1058_RS01330 0.17 +0.6
152,054 + HMPREF1058_RS01330 0.17 -0.3
152,106 - HMPREF1058_RS01330 0.21 +0.2
152,140 + HMPREF1058_RS01330 0.24 +0.3
152,141 - HMPREF1058_RS01330 0.24 +0.3
152,206 + HMPREF1058_RS01330 0.29 -0.7
152,207 - HMPREF1058_RS01330 0.29 +0.6
152,208 + HMPREF1058_RS01330 0.29 -0.1
152,286 + HMPREF1058_RS01330 0.36 -0.5
152,293 + HMPREF1058_RS01330 0.36 -0.6
152,293 + HMPREF1058_RS01330 0.36 +0.3
152,422 - HMPREF1058_RS01330 0.46 +2.3
152,463 + HMPREF1058_RS01330 0.50 -1.3
152,571 - HMPREF1058_RS01330 0.58 +0.5
152,572 + HMPREF1058_RS01330 0.58 +1.6
152,572 + HMPREF1058_RS01330 0.58 -1.0
152,573 - HMPREF1058_RS01330 0.58 +1.1
152,573 - HMPREF1058_RS01330 0.58 -0.7
152,576 - HMPREF1058_RS01330 0.59 -0.0
152,686 - HMPREF1058_RS01330 0.67 +1.3
152,751 - HMPREF1058_RS01330 0.73 +0.4
152,755 + HMPREF1058_RS01330 0.73 +1.1
152,891 + HMPREF1058_RS01330 0.84 -0.5
152,915 - HMPREF1058_RS01330 0.86 +1.6
152,972 - +1.0
152,975 + -1.0
152,982 + +0.3
153,069 - +0.1
153,119 + +0.1
153,120 - +0.5
153,120 - -0.4
153,224 + -0.0
153,271 + +0.3
153,420 + -1.3
153,454 + -0.9
153,518 + +0.3
153,704 + HMPREF1058_RS01325 0.14 -0.9
153,704 + HMPREF1058_RS01325 0.14 +0.7
153,714 - HMPREF1058_RS01325 0.15 -1.5
153,751 - HMPREF1058_RS01325 0.17 +0.5
153,794 + HMPREF1058_RS01325 0.20 -0.1
153,846 - HMPREF1058_RS01325 0.23 -0.1
153,846 - HMPREF1058_RS01325 0.23 -0.0
153,871 - HMPREF1058_RS01325 0.25 -1.5
153,880 - HMPREF1058_RS01325 0.25 +0.0
153,925 - HMPREF1058_RS01325 0.28 +0.2
153,931 - HMPREF1058_RS01325 0.29 -0.5
153,955 - HMPREF1058_RS01325 0.30 -0.5
154,018 + HMPREF1058_RS01325 0.34 +0.3
154,018 + HMPREF1058_RS01325 0.34 -0.2

Or see this region's nucleotide sequence