Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS0120135 and HMPREF1058_RS01050 are separated by 108 nucleotides HMPREF1058_RS01050 and HMPREF1058_RS21555 are separated by 75 nucleotides
HMPREF1058_RS0120135: HMPREF1058_RS0120135 - hypothetical protein, at 222,045 to 222,248
_RS0120135
HMPREF1058_RS01050: HMPREF1058_RS01050 - hypothetical protein, at 222,357 to 222,614
_RS01050
HMPREF1058_RS21555: HMPREF1058_RS21555 - hypothetical protein, at 222,690 to 223,205
_RS21555
Position (kb) 222
223 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 221.895 kb on + strand at 221.901 kb on - strand at 221.958 kb on - strand at 221.960 kb on + strand at 221.966 kb on + strand at 221.966 kb on + strand at 221.966 kb on + strand at 221.969 kb on - strand at 221.969 kb on - strand at 221.972 kb on - strand at 221.972 kb on - strand at 221.975 kb on + strand at 221.975 kb on + strand at 221.976 kb on - strand at 221.976 kb on - strand at 221.977 kb on + strand at 221.977 kb on + strand at 221.977 kb on + strand at 221.977 kb on + strand at 221.978 kb on - strand at 221.978 kb on - strand at 221.978 kb on - strand at 221.979 kb on + strand at 221.979 kb on + strand at 221.979 kb on + strand at 221.980 kb on - strand at 221.980 kb on - strand at 221.980 kb on - strand at 221.980 kb on - strand at 221.980 kb on - strand at 221.980 kb on - strand at 221.981 kb on + strand at 221.981 kb on + strand at 221.981 kb on + strand at 222.017 kb on + strand at 222.031 kb on + strand at 222.042 kb on + strand at 222.042 kb on + strand at 222.042 kb on + strand at 222.043 kb on - strand at 222.043 kb on - strand at 222.043 kb on - strand at 222.043 kb on - strand at 222.045 kb on - strand at 222.075 kb on + strand, within HMPREF1058_RS0120135 at 222.077 kb on + strand, within HMPREF1058_RS0120135 at 222.077 kb on + strand, within HMPREF1058_RS0120135 at 222.077 kb on + strand, within HMPREF1058_RS0120135 at 222.077 kb on + strand, within HMPREF1058_RS0120135 at 222.080 kb on + strand, within HMPREF1058_RS0120135 at 222.081 kb on - strand, within HMPREF1058_RS0120135 at 222.136 kb on + strand, within HMPREF1058_RS0120135 at 222.137 kb on - strand, within HMPREF1058_RS0120135 at 222.215 kb on + strand, within HMPREF1058_RS0120135 at 222.239 kb on + strand at 222.241 kb on + strand at 222.253 kb on + strand at 222.254 kb on - strand at 222.271 kb on + strand at 222.275 kb on + strand at 222.275 kb on + strand at 222.293 kb on + strand at 222.384 kb on - strand, within HMPREF1058_RS01050 at 222.405 kb on + strand, within HMPREF1058_RS01050 at 222.405 kb on + strand, within HMPREF1058_RS01050 at 222.405 kb on + strand, within HMPREF1058_RS01050 at 222.406 kb on - strand, within HMPREF1058_RS01050 at 222.433 kb on + strand, within HMPREF1058_RS01050 at 222.434 kb on - strand, within HMPREF1058_RS01050 at 222.434 kb on - strand, within HMPREF1058_RS01050 at 222.434 kb on - strand, within HMPREF1058_RS01050 at 222.476 kb on + strand, within HMPREF1058_RS01050 at 222.477 kb on - strand, within HMPREF1058_RS01050 at 222.480 kb on + strand, within HMPREF1058_RS01050 at 222.483 kb on - strand, within HMPREF1058_RS01050 at 222.521 kb on + strand, within HMPREF1058_RS01050 at 222.521 kb on + strand, within HMPREF1058_RS01050 at 222.533 kb on + strand, within HMPREF1058_RS01050 at 222.534 kb on - strand, within HMPREF1058_RS01050 at 222.534 kb on - strand, within HMPREF1058_RS01050 at 222.560 kb on + strand, within HMPREF1058_RS01050 at 222.561 kb on - strand, within HMPREF1058_RS01050 at 222.566 kb on + strand, within HMPREF1058_RS01050 at 222.567 kb on - strand, within HMPREF1058_RS01050 at 222.572 kb on - strand, within HMPREF1058_RS01050 at 222.572 kb on - strand, within HMPREF1058_RS01050 at 222.588 kb on - strand, within HMPREF1058_RS01050 at 222.641 kb on + strand at 222.694 kb on + strand at 222.695 kb on - strand at 222.695 kb on - strand at 222.696 kb on + strand at 222.696 kb on + strand at 222.696 kb on + strand at 222.697 kb on - strand at 222.697 kb on - strand at 222.697 kb on - strand at 222.742 kb on - strand at 222.742 kb on - strand, within HMPREF1058_RS21555 at 222.778 kb on - strand, within HMPREF1058_RS21555 at 222.778 kb on - strand, within HMPREF1058_RS21555 at 222.780 kb on + strand, within HMPREF1058_RS21555 at 222.780 kb on + strand, within HMPREF1058_RS21555 at 222.808 kb on + strand, within HMPREF1058_RS21555 at 222.809 kb on - strand, within HMPREF1058_RS21555 at 222.828 kb on - strand, within HMPREF1058_RS21555 at 222.836 kb on + strand, within HMPREF1058_RS21555 at 222.836 kb on - strand, within HMPREF1058_RS21555 at 222.837 kb on - strand, within HMPREF1058_RS21555 at 222.837 kb on - strand, within HMPREF1058_RS21555 at 222.838 kb on + strand, within HMPREF1058_RS21555 at 222.839 kb on - strand, within HMPREF1058_RS21555 at 222.839 kb on - strand, within HMPREF1058_RS21555 at 222.841 kb on + strand, within HMPREF1058_RS21555 at 222.841 kb on + strand, within HMPREF1058_RS21555 at 222.841 kb on + strand, within HMPREF1058_RS21555 at 222.842 kb on - strand, within HMPREF1058_RS21555 at 222.845 kb on + strand, within HMPREF1058_RS21555 at 222.849 kb on - strand, within HMPREF1058_RS21555 at 222.893 kb on + strand, within HMPREF1058_RS21555 at 222.893 kb on + strand, within HMPREF1058_RS21555 at 222.894 kb on - strand, within HMPREF1058_RS21555 at 222.914 kb on + strand, within HMPREF1058_RS21555 at 222.914 kb on + strand, within HMPREF1058_RS21555 at 222.914 kb on + strand, within HMPREF1058_RS21555 at 222.954 kb on - strand, within HMPREF1058_RS21555 at 222.959 kb on + strand, within HMPREF1058_RS21555 at 222.995 kb on + strand, within HMPREF1058_RS21555 at 223.004 kb on + strand at 223.011 kb on - strand, within HMPREF1058_RS21555 at 223.022 kb on + strand, within HMPREF1058_RS21555 at 223.025 kb on + strand, within HMPREF1058_RS21555 at 223.076 kb on + strand, within HMPREF1058_RS21555 at 223.135 kb on - strand, within HMPREF1058_RS21555 at 223.177 kb on - strand at 223.180 kb on - strand at 223.245 kb on + strand at 223.245 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3 remove 221,895 + +0.4 221,901 - +0.0 221,958 - +0.3 221,960 + +0.9 221,966 + +0.9 221,966 + -1.4 221,966 + -3.2 221,969 - -0.1 221,969 - +0.4 221,972 - +0.4 221,972 - -0.4 221,975 + +0.4 221,975 + -1.2 221,976 - -0.3 221,976 - +1.0 221,977 + -0.2 221,977 + -0.5 221,977 + +1.2 221,977 + +0.5 221,978 - -0.4 221,978 - +0.6 221,978 - +0.4 221,979 + -0.1 221,979 + +0.0 221,979 + -0.6 221,980 - -1.3 221,980 - -3.2 221,980 - +0.6 221,980 - -1.4 221,980 - -0.1 221,980 - +0.6 221,981 + -0.3 221,981 + -0.9 221,981 + -0.3 222,017 + -0.4 222,031 + -1.4 222,042 + -0.6 222,042 + +0.6 222,042 + +0.2 222,043 - +0.1 222,043 - +1.1 222,043 - -0.4 222,043 - +0.4 222,045 - +0.7 222,075 + HMPREF1058_RS0120135 0.15 +0.3 222,077 + HMPREF1058_RS0120135 0.16 +0.1 222,077 + HMPREF1058_RS0120135 0.16 -1.7 222,077 + HMPREF1058_RS0120135 0.16 +0.3 222,077 + HMPREF1058_RS0120135 0.16 +0.6 222,080 + HMPREF1058_RS0120135 0.17 -0.1 222,081 - HMPREF1058_RS0120135 0.18 +0.2 222,136 + HMPREF1058_RS0120135 0.45 +0.2 222,137 - HMPREF1058_RS0120135 0.45 +2.1 222,215 + HMPREF1058_RS0120135 0.83 +0.9 222,239 + +2.1 222,241 + -0.8 222,253 + -0.7 222,254 - +0.5 222,271 + +0.9 222,275 + -1.5 222,275 + +0.3 222,293 + +0.3 222,384 - HMPREF1058_RS01050 0.10 +0.8 222,405 + HMPREF1058_RS01050 0.19 +0.2 222,405 + HMPREF1058_RS01050 0.19 +0.3 222,405 + HMPREF1058_RS01050 0.19 -2.1 222,406 - HMPREF1058_RS01050 0.19 -0.6 222,433 + HMPREF1058_RS01050 0.29 +1.2 222,434 - HMPREF1058_RS01050 0.30 +1.0 222,434 - HMPREF1058_RS01050 0.30 -2.0 222,434 - HMPREF1058_RS01050 0.30 -1.1 222,476 + HMPREF1058_RS01050 0.46 +0.4 222,477 - HMPREF1058_RS01050 0.47 -0.3 222,480 + HMPREF1058_RS01050 0.48 -1.3 222,483 - HMPREF1058_RS01050 0.49 +0.3 222,521 + HMPREF1058_RS01050 0.64 -0.1 222,521 + HMPREF1058_RS01050 0.64 +0.3 222,533 + HMPREF1058_RS01050 0.68 +0.2 222,534 - HMPREF1058_RS01050 0.69 -1.2 222,534 - HMPREF1058_RS01050 0.69 +1.5 222,560 + HMPREF1058_RS01050 0.79 -0.3 222,561 - HMPREF1058_RS01050 0.79 +1.1 222,566 + HMPREF1058_RS01050 0.81 -0.1 222,567 - HMPREF1058_RS01050 0.81 -0.1 222,572 - HMPREF1058_RS01050 0.83 -0.1 222,572 - HMPREF1058_RS01050 0.83 -0.5 222,588 - HMPREF1058_RS01050 0.90 +0.4 222,641 + +0.3 222,694 + -1.7 222,695 - +1.1 222,695 - -0.2 222,696 + -1.1 222,696 + -0.3 222,696 + -1.3 222,697 - -1.7 222,697 - +1.0 222,697 - +0.0 222,742 - +0.9 222,742 - HMPREF1058_RS21555 0.10 +0.0 222,778 - HMPREF1058_RS21555 0.17 +0.3 222,778 - HMPREF1058_RS21555 0.17 +0.7 222,780 + HMPREF1058_RS21555 0.17 -2.0 222,780 + HMPREF1058_RS21555 0.17 -1.9 222,808 + HMPREF1058_RS21555 0.23 -0.5 222,809 - HMPREF1058_RS21555 0.23 -1.2 222,828 - HMPREF1058_RS21555 0.27 +0.3 222,836 + HMPREF1058_RS21555 0.28 -0.4 222,836 - HMPREF1058_RS21555 0.28 +0.4 222,837 - HMPREF1058_RS21555 0.28 +0.3 222,837 - HMPREF1058_RS21555 0.28 +1.4 222,838 + HMPREF1058_RS21555 0.29 +1.0 222,839 - HMPREF1058_RS21555 0.29 -0.6 222,839 - HMPREF1058_RS21555 0.29 +0.8 222,841 + HMPREF1058_RS21555 0.29 +0.3 222,841 + HMPREF1058_RS21555 0.29 +0.4 222,841 + HMPREF1058_RS21555 0.29 -1.0 222,842 - HMPREF1058_RS21555 0.29 +0.3 222,845 + HMPREF1058_RS21555 0.30 +0.3 222,849 - HMPREF1058_RS21555 0.31 -0.0 222,893 + HMPREF1058_RS21555 0.39 -0.3 222,893 + HMPREF1058_RS21555 0.39 +1.0 222,894 - HMPREF1058_RS21555 0.40 +0.1 222,914 + HMPREF1058_RS21555 0.43 +0.3 222,914 + HMPREF1058_RS21555 0.43 +0.8 222,914 + HMPREF1058_RS21555 0.43 -0.1 222,954 - HMPREF1058_RS21555 0.51 -0.9 222,959 + HMPREF1058_RS21555 0.52 +1.5 222,995 + HMPREF1058_RS21555 0.59 +0.4 223,004 + +1.3 223,011 - HMPREF1058_RS21555 0.62 -1.3 223,022 + HMPREF1058_RS21555 0.64 -0.6 223,025 + HMPREF1058_RS21555 0.65 -0.0 223,076 + HMPREF1058_RS21555 0.75 +0.5 223,135 - HMPREF1058_RS21555 0.86 +0.4 223,177 - +1.5 223,180 - -0.8 223,245 + -0.5 223,245 + +0.0
Or see this region's nucleotide sequence