Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15530 and HMPREF1058_RS15525 are separated by 150 nucleotides HMPREF1058_RS15525 and HMPREF1058_RS15520 are separated by 10 nucleotides HMPREF1058_RS15520 and HMPREF1058_RS15515 are separated by 84 nucleotides
HMPREF1058_RS15530: HMPREF1058_RS15530 - diphosphate--fructose-6-phosphate 1-phosphotransferase, at 894,336 to 895,979
_RS15530
HMPREF1058_RS15525: HMPREF1058_RS15525 - hypothetical protein, at 896,130 to 896,378
_RS15525
HMPREF1058_RS15520: HMPREF1058_RS15520 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 896,389 to 896,946
_RS15520
HMPREF1058_RS15515: HMPREF1058_RS15515 - alpha-1,3-galactosidase, at 897,031 to 898,848
_RS15515
Position (kb) 896
897 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 896.258 kb on + strand, within HMPREF1058_RS15525 at 896.260 kb on + strand, within HMPREF1058_RS15525 at 896.260 kb on + strand, within HMPREF1058_RS15525 at 896.401 kb on - strand at 896.471 kb on - strand, within HMPREF1058_RS15520 at 896.538 kb on + strand, within HMPREF1058_RS15520 at 896.591 kb on + strand, within HMPREF1058_RS15520 at 896.756 kb on - strand, within HMPREF1058_RS15520 at 896.890 kb on + strand, within HMPREF1058_RS15520 at 896.911 kb on + strand at 897.022 kb on + strand at 897.023 kb on - strand at 897.023 kb on - strand at 897.028 kb on + strand at 897.032 kb on + strand at 897.033 kb on - strand at 897.046 kb on - strand at 897.046 kb on - strand at 897.046 kb on - strand at 897.046 kb on - strand at 897.235 kb on - strand, within HMPREF1058_RS15515 at 897.319 kb on - strand, within HMPREF1058_RS15515 at 897.348 kb on + strand, within HMPREF1058_RS15515 at 897.348 kb on + strand, within HMPREF1058_RS15515 at 897.348 kb on + strand, within HMPREF1058_RS15515 at 897.459 kb on + strand, within HMPREF1058_RS15515 at 897.639 kb on + strand, within HMPREF1058_RS15515 at 897.666 kb on + strand, within HMPREF1058_RS15515 at 897.746 kb on - strand, within HMPREF1058_RS15515 at 897.813 kb on + strand, within HMPREF1058_RS15515 at 897.845 kb on + strand, within HMPREF1058_RS15515 at 897.846 kb on - strand, within HMPREF1058_RS15515 at 897.856 kb on + strand, within HMPREF1058_RS15515 at 897.857 kb on - strand, within HMPREF1058_RS15515 at 897.857 kb on - strand, within HMPREF1058_RS15515 at 897.887 kb on + strand, within HMPREF1058_RS15515
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day3 remove 896,258 + HMPREF1058_RS15525 0.51 +0.3 896,260 + HMPREF1058_RS15525 0.52 +0.3 896,260 + HMPREF1058_RS15525 0.52 -0.1 896,401 - -3.2 896,471 - HMPREF1058_RS15520 0.15 -0.6 896,538 + HMPREF1058_RS15520 0.27 -3.7 896,591 + HMPREF1058_RS15520 0.36 -3.1 896,756 - HMPREF1058_RS15520 0.66 -2.3 896,890 + HMPREF1058_RS15520 0.90 -1.5 896,911 + +2.6 897,022 + +0.2 897,023 - +0.2 897,023 - +0.3 897,028 + +0.8 897,032 + +0.2 897,033 - -0.3 897,046 - +0.3 897,046 - -0.0 897,046 - +0.8 897,046 - -1.7 897,235 - HMPREF1058_RS15515 0.11 +0.1 897,319 - HMPREF1058_RS15515 0.16 +0.2 897,348 + HMPREF1058_RS15515 0.17 -0.5 897,348 + HMPREF1058_RS15515 0.17 +0.9 897,348 + HMPREF1058_RS15515 0.17 -2.2 897,459 + HMPREF1058_RS15515 0.24 +0.0 897,639 + HMPREF1058_RS15515 0.33 +0.2 897,666 + HMPREF1058_RS15515 0.35 -1.9 897,746 - HMPREF1058_RS15515 0.39 -0.9 897,813 + HMPREF1058_RS15515 0.43 -0.3 897,845 + HMPREF1058_RS15515 0.45 -0.6 897,846 - HMPREF1058_RS15515 0.45 -0.1 897,856 + HMPREF1058_RS15515 0.45 -0.6 897,857 - HMPREF1058_RS15515 0.45 -0.2 897,857 - HMPREF1058_RS15515 0.45 +0.2 897,887 + HMPREF1058_RS15515 0.47 -1.8
Or see this region's nucleotide sequence