Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15405 and HMPREF1058_RS15400 are separated by 152 nucleotides HMPREF1058_RS15400 and HMPREF1058_RS15395 overlap by 4 nucleotides HMPREF1058_RS15395 and HMPREF1058_RS15390 overlap by 4 nucleotides HMPREF1058_RS15390 and HMPREF1058_RS15385 are separated by 14 nucleotides
HMPREF1058_RS15405: HMPREF1058_RS15405 - outer membrane beta-barrel protein, at 930,163 to 930,789
_RS15405
HMPREF1058_RS15400: HMPREF1058_RS15400 - polyprenol monophosphomannose synthase, at 930,942 to 931,691
_RS15400
HMPREF1058_RS15395: HMPREF1058_RS15395 - dihydroorotase, at 931,688 to 933,028
_RS15395
HMPREF1058_RS15390: HMPREF1058_RS15390 - 5-methyltetrahydrofolate--homocysteine methyltransferase, at 933,025 to 933,912
_RS15390
HMPREF1058_RS15385: HMPREF1058_RS15385 - metallophosphoesterase, at 933,927 to 935,087
_RS15385
Position (kb) 931
932
933
934 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 930.706 kb on + strand, within HMPREF1058_RS15405 at 930.728 kb on + strand at 930.732 kb on + strand at 930.733 kb on - strand at 930.733 kb on - strand at 930.737 kb on - strand at 930.802 kb on + strand at 930.895 kb on + strand at 930.910 kb on + strand at 930.927 kb on + strand at 931.669 kb on - strand at 931.696 kb on + strand at 931.875 kb on + strand, within HMPREF1058_RS15395 at 931.875 kb on + strand, within HMPREF1058_RS15395 at 931.915 kb on - strand, within HMPREF1058_RS15395 at 931.990 kb on + strand, within HMPREF1058_RS15395 at 932.092 kb on - strand, within HMPREF1058_RS15395 at 933.053 kb on + strand at 933.066 kb on + strand at 933.128 kb on + strand, within HMPREF1058_RS15390 at 933.129 kb on - strand, within HMPREF1058_RS15390 at 933.129 kb on - strand, within HMPREF1058_RS15390 at 933.456 kb on - strand, within HMPREF1058_RS15390 at 933.479 kb on - strand, within HMPREF1058_RS15390 at 933.611 kb on + strand, within HMPREF1058_RS15390 at 933.625 kb on - strand, within HMPREF1058_RS15390 at 933.644 kb on + strand, within HMPREF1058_RS15390 at 933.850 kb on + strand at 933.874 kb on - strand at 933.970 kb on + strand at 933.984 kb on + strand at 933.985 kb on - strand at 933.986 kb on + strand at 933.986 kb on + strand at 933.987 kb on - strand at 933.987 kb on - strand at 933.988 kb on + strand at 933.988 kb on + strand at 933.988 kb on + strand at 933.990 kb on + strand at 933.990 kb on + strand at 933.991 kb on - strand at 933.991 kb on - strand at 933.991 kb on - strand at 933.999 kb on + strand at 934.000 kb on - strand at 934.001 kb on + strand at 934.001 kb on + strand at 934.002 kb on - strand at 934.002 kb on - strand at 934.002 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day3 remove 930,706 + HMPREF1058_RS15405 0.87 -0.9 930,728 + -0.7 930,732 + -0.6 930,733 - -2.0 930,733 - -2.0 930,737 - -0.8 930,802 + +0.4 930,895 + -0.3 930,910 + +0.7 930,927 + +0.4 931,669 - -2.0 931,696 + -2.4 931,875 + HMPREF1058_RS15395 0.14 -2.0 931,875 + HMPREF1058_RS15395 0.14 -2.6 931,915 - HMPREF1058_RS15395 0.17 -2.6 931,990 + HMPREF1058_RS15395 0.23 -2.4 932,092 - HMPREF1058_RS15395 0.30 -2.0 933,053 + -1.3 933,066 + -2.3 933,128 + HMPREF1058_RS15390 0.12 +1.1 933,129 - HMPREF1058_RS15390 0.12 -2.5 933,129 - HMPREF1058_RS15390 0.12 -3.1 933,456 - HMPREF1058_RS15390 0.49 -2.1 933,479 - HMPREF1058_RS15390 0.51 -2.0 933,611 + HMPREF1058_RS15390 0.66 -2.3 933,625 - HMPREF1058_RS15390 0.68 -3.0 933,644 + HMPREF1058_RS15390 0.70 -2.3 933,850 + -1.6 933,874 - -2.8 933,970 + -1.0 933,984 + -0.3 933,985 - -0.4 933,986 + -0.6 933,986 + -0.9 933,987 - -0.4 933,987 - -1.4 933,988 + +0.7 933,988 + -0.6 933,988 + +0.3 933,990 + -0.3 933,990 + -0.5 933,991 - +0.6 933,991 - -0.8 933,991 - -2.3 933,999 + -1.5 934,000 - -1.2 934,001 + -3.5 934,001 + -0.1 934,002 - +0.6 934,002 - -0.5 934,002 - -0.2
Or see this region's nucleotide sequence