Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07960 and HMPREF1058_RS07955 are separated by 77 nucleotides HMPREF1058_RS07955 and HMPREF1058_RS07950 are separated by 150 nucleotides HMPREF1058_RS07950 and HMPREF1058_RS07945 are separated by 71 nucleotides
HMPREF1058_RS07960: HMPREF1058_RS07960 - response regulator, at 89,214 to 93,230
_RS07960
HMPREF1058_RS07955: HMPREF1058_RS07955 - phosphoribosylformylglycinamidine synthase, at 93,308 to 97,012
_RS07955
HMPREF1058_RS07950: HMPREF1058_RS07950 - LysE family translocator, at 97,163 to 97,822
_RS07950
HMPREF1058_RS07945: HMPREF1058_RS07945 - DUF4924 family protein, at 97,894 to 98,436
_RS07945
Position (kb) 93
94
95
96
97
98 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2 at 92.343 kb on - strand, within HMPREF1058_RS07960 at 92.367 kb on + strand, within HMPREF1058_RS07960 at 92.371 kb on - strand, within HMPREF1058_RS07960 at 92.439 kb on + strand, within HMPREF1058_RS07960 at 92.440 kb on - strand, within HMPREF1058_RS07960 at 92.473 kb on - strand, within HMPREF1058_RS07960 at 92.477 kb on - strand, within HMPREF1058_RS07960 at 92.481 kb on - strand, within HMPREF1058_RS07960 at 92.499 kb on + strand, within HMPREF1058_RS07960 at 92.499 kb on + strand, within HMPREF1058_RS07960 at 92.505 kb on + strand, within HMPREF1058_RS07960 at 92.536 kb on + strand, within HMPREF1058_RS07960 at 92.537 kb on - strand, within HMPREF1058_RS07960 at 92.545 kb on - strand, within HMPREF1058_RS07960 at 92.583 kb on + strand, within HMPREF1058_RS07960 at 92.638 kb on + strand, within HMPREF1058_RS07960 at 92.665 kb on + strand, within HMPREF1058_RS07960 at 92.666 kb on - strand, within HMPREF1058_RS07960 at 92.702 kb on + strand, within HMPREF1058_RS07960 at 92.702 kb on + strand, within HMPREF1058_RS07960 at 92.714 kb on + strand, within HMPREF1058_RS07960 at 92.714 kb on + strand, within HMPREF1058_RS07960 at 92.715 kb on - strand, within HMPREF1058_RS07960 at 92.719 kb on - strand, within HMPREF1058_RS07960 at 92.732 kb on - strand, within HMPREF1058_RS07960 at 92.758 kb on - strand, within HMPREF1058_RS07960 at 92.759 kb on + strand, within HMPREF1058_RS07960 at 92.759 kb on + strand, within HMPREF1058_RS07960 at 92.759 kb on + strand, within HMPREF1058_RS07960 at 92.759 kb on + strand, within HMPREF1058_RS07960 at 92.759 kb on + strand, within HMPREF1058_RS07960 at 92.760 kb on - strand, within HMPREF1058_RS07960 at 92.760 kb on - strand, within HMPREF1058_RS07960 at 92.760 kb on - strand, within HMPREF1058_RS07960 at 92.760 kb on - strand, within HMPREF1058_RS07960 at 92.760 kb on - strand, within HMPREF1058_RS07960 at 92.853 kb on - strand at 92.869 kb on + strand at 92.869 kb on + strand at 92.869 kb on + strand at 92.877 kb on + strand at 92.919 kb on - strand at 92.919 kb on - strand at 92.981 kb on + strand at 92.982 kb on - strand at 92.992 kb on + strand at 93.007 kb on + strand at 93.007 kb on + strand at 93.016 kb on - strand at 93.041 kb on + strand at 93.042 kb on - strand at 93.042 kb on - strand at 93.042 kb on - strand at 93.063 kb on + strand at 93.117 kb on + strand at 93.159 kb on + strand at 93.161 kb on + strand at 93.165 kb on + strand at 93.166 kb on - strand at 93.182 kb on + strand at 93.243 kb on + strand at 93.246 kb on - strand at 93.529 kb on - strand at 93.534 kb on + strand at 93.553 kb on - strand at 93.553 kb on - strand at 93.553 kb on - strand at 93.650 kb on - strand at 93.755 kb on + strand, within HMPREF1058_RS07955 at 93.779 kb on + strand, within HMPREF1058_RS07955 at 93.797 kb on - strand, within HMPREF1058_RS07955 at 93.797 kb on - strand, within HMPREF1058_RS07955 at 93.797 kb on - strand, within HMPREF1058_RS07955 at 93.797 kb on - strand, within HMPREF1058_RS07955 at 93.810 kb on + strand, within HMPREF1058_RS07955 at 93.818 kb on - strand, within HMPREF1058_RS07955 at 93.896 kb on - strand, within HMPREF1058_RS07955 at 93.971 kb on + strand, within HMPREF1058_RS07955 at 93.972 kb on - strand, within HMPREF1058_RS07955 at 94.000 kb on - strand, within HMPREF1058_RS07955 at 94.008 kb on + strand, within HMPREF1058_RS07955 at 94.232 kb on + strand, within HMPREF1058_RS07955 at 94.233 kb on - strand, within HMPREF1058_RS07955 at 94.233 kb on - strand, within HMPREF1058_RS07955 at 94.245 kb on + strand, within HMPREF1058_RS07955 at 94.263 kb on + strand, within HMPREF1058_RS07955 at 94.313 kb on - strand, within HMPREF1058_RS07955 at 94.323 kb on - strand, within HMPREF1058_RS07955 at 94.332 kb on - strand, within HMPREF1058_RS07955 at 94.442 kb on - strand, within HMPREF1058_RS07955 at 94.507 kb on + strand, within HMPREF1058_RS07955 at 94.556 kb on - strand, within HMPREF1058_RS07955 at 94.562 kb on + strand, within HMPREF1058_RS07955 at 94.597 kb on - strand, within HMPREF1058_RS07955 at 94.610 kb on + strand, within HMPREF1058_RS07955 at 94.611 kb on - strand, within HMPREF1058_RS07955 at 94.632 kb on - strand, within HMPREF1058_RS07955 at 94.673 kb on + strand, within HMPREF1058_RS07955 at 94.696 kb on + strand, within HMPREF1058_RS07955 at 94.701 kb on + strand, within HMPREF1058_RS07955 at 94.701 kb on + strand, within HMPREF1058_RS07955 at 95.006 kb on + strand, within HMPREF1058_RS07955 at 95.006 kb on + strand, within HMPREF1058_RS07955 at 95.099 kb on + strand, within HMPREF1058_RS07955 at 95.101 kb on + strand, within HMPREF1058_RS07955 at 95.102 kb on - strand, within HMPREF1058_RS07955 at 95.129 kb on + strand, within HMPREF1058_RS07955 at 95.130 kb on - strand, within HMPREF1058_RS07955 at 95.210 kb on + strand, within HMPREF1058_RS07955 at 95.215 kb on + strand, within HMPREF1058_RS07955 at 95.259 kb on - strand, within HMPREF1058_RS07955 at 95.269 kb on + strand, within HMPREF1058_RS07955 at 95.451 kb on + strand, within HMPREF1058_RS07955 at 95.451 kb on + strand, within HMPREF1058_RS07955 at 95.451 kb on + strand, within HMPREF1058_RS07955 at 95.452 kb on - strand, within HMPREF1058_RS07955 at 95.452 kb on - strand, within HMPREF1058_RS07955 at 95.549 kb on - strand, within HMPREF1058_RS07955 at 95.597 kb on - strand, within HMPREF1058_RS07955 at 95.604 kb on - strand, within HMPREF1058_RS07955 at 95.622 kb on - strand, within HMPREF1058_RS07955 at 95.689 kb on + strand, within HMPREF1058_RS07955 at 95.690 kb on - strand, within HMPREF1058_RS07955 at 95.720 kb on - strand, within HMPREF1058_RS07955 at 95.720 kb on - strand, within HMPREF1058_RS07955 at 95.721 kb on + strand, within HMPREF1058_RS07955 at 95.721 kb on + strand, within HMPREF1058_RS07955 at 95.721 kb on + strand, within HMPREF1058_RS07955 at 95.722 kb on - strand, within HMPREF1058_RS07955 at 95.722 kb on - strand, within HMPREF1058_RS07955 at 95.852 kb on + strand, within HMPREF1058_RS07955 at 95.863 kb on + strand, within HMPREF1058_RS07955 at 95.864 kb on - strand, within HMPREF1058_RS07955 at 95.864 kb on - strand, within HMPREF1058_RS07955 at 95.864 kb on - strand, within HMPREF1058_RS07955 at 95.932 kb on + strand, within HMPREF1058_RS07955 at 95.933 kb on - strand, within HMPREF1058_RS07955 at 95.952 kb on + strand, within HMPREF1058_RS07955 at 95.953 kb on - strand, within HMPREF1058_RS07955 at 95.953 kb on - strand, within HMPREF1058_RS07955 at 95.953 kb on - strand, within HMPREF1058_RS07955 at 96.148 kb on + strand, within HMPREF1058_RS07955 at 96.149 kb on - strand, within HMPREF1058_RS07955 at 96.149 kb on - strand, within HMPREF1058_RS07955 at 96.149 kb on - strand, within HMPREF1058_RS07955 at 96.151 kb on - strand, within HMPREF1058_RS07955 at 96.248 kb on + strand, within HMPREF1058_RS07955 at 96.248 kb on + strand, within HMPREF1058_RS07955 at 96.248 kb on + strand, within HMPREF1058_RS07955 at 96.249 kb on - strand, within HMPREF1058_RS07955 at 96.290 kb on - strand, within HMPREF1058_RS07955 at 96.382 kb on - strand, within HMPREF1058_RS07955 at 96.391 kb on + strand, within HMPREF1058_RS07955 at 96.393 kb on + strand, within HMPREF1058_RS07955 at 96.562 kb on + strand, within HMPREF1058_RS07955 at 96.562 kb on + strand, within HMPREF1058_RS07955 at 96.563 kb on - strand, within HMPREF1058_RS07955 at 96.595 kb on - strand, within HMPREF1058_RS07955 at 96.717 kb on + strand at 96.717 kb on + strand at 96.717 kb on + strand at 96.718 kb on - strand at 96.718 kb on - strand at 96.718 kb on - strand at 96.721 kb on + strand at 96.771 kb on + strand at 96.771 kb on + strand at 96.785 kb on + strand at 96.786 kb on - strand at 96.797 kb on - strand at 96.797 kb on - strand at 96.797 kb on - strand at 96.900 kb on - strand at 96.977 kb on + strand at 96.977 kb on + strand at 96.978 kb on - strand at 97.021 kb on + strand at 97.022 kb on - strand at 97.067 kb on - strand at 97.069 kb on + strand at 97.090 kb on + strand at 97.090 kb on - strand at 97.090 kb on - strand at 97.122 kb on + strand at 97.126 kb on + strand at 97.132 kb on + strand at 97.833 kb on + strand at 97.833 kb on + strand at 97.943 kb on + strand at 97.945 kb on + strand at 97.945 kb on + strand at 97.945 kb on + strand at 97.945 kb on + strand at 97.945 kb on + strand at 97.945 kb on + strand at 97.947 kb on + strand at 97.947 kb on + strand at 97.947 kb on + strand at 97.989 kb on + strand, within HMPREF1058_RS07945
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day3 remove 92,343 - HMPREF1058_RS07960 0.78 +0.2 92,367 + HMPREF1058_RS07960 0.78 -1.6 92,371 - HMPREF1058_RS07960 0.79 -0.5 92,439 + HMPREF1058_RS07960 0.80 -1.7 92,440 - HMPREF1058_RS07960 0.80 -2.8 92,473 - HMPREF1058_RS07960 0.81 -1.5 92,477 - HMPREF1058_RS07960 0.81 -2.4 92,481 - HMPREF1058_RS07960 0.81 -1.7 92,499 + HMPREF1058_RS07960 0.82 -1.4 92,499 + HMPREF1058_RS07960 0.82 -1.2 92,505 + HMPREF1058_RS07960 0.82 -2.1 92,536 + HMPREF1058_RS07960 0.83 -1.6 92,537 - HMPREF1058_RS07960 0.83 -0.7 92,545 - HMPREF1058_RS07960 0.83 -1.0 92,583 + HMPREF1058_RS07960 0.84 -1.3 92,638 + HMPREF1058_RS07960 0.85 -0.2 92,665 + HMPREF1058_RS07960 0.86 -2.7 92,666 - HMPREF1058_RS07960 0.86 -3.2 92,702 + HMPREF1058_RS07960 0.87 -3.2 92,702 + HMPREF1058_RS07960 0.87 -2.2 92,714 + HMPREF1058_RS07960 0.87 -2.3 92,714 + HMPREF1058_RS07960 0.87 -1.0 92,715 - HMPREF1058_RS07960 0.87 -3.3 92,719 - HMPREF1058_RS07960 0.87 -0.7 92,732 - HMPREF1058_RS07960 0.88 -2.4 92,758 - HMPREF1058_RS07960 0.88 -1.3 92,759 + HMPREF1058_RS07960 0.88 -2.2 92,759 + HMPREF1058_RS07960 0.88 -1.1 92,759 + HMPREF1058_RS07960 0.88 -2.6 92,759 + HMPREF1058_RS07960 0.88 -3.5 92,759 + HMPREF1058_RS07960 0.88 -0.9 92,760 - HMPREF1058_RS07960 0.88 -1.4 92,760 - HMPREF1058_RS07960 0.88 -1.9 92,760 - HMPREF1058_RS07960 0.88 -3.8 92,760 - HMPREF1058_RS07960 0.88 -1.1 92,760 - HMPREF1058_RS07960 0.88 +0.3 92,853 - -0.4 92,869 + -2.2 92,869 + -1.2 92,869 + -1.7 92,877 + -1.3 92,919 - -1.4 92,919 - +0.2 92,981 + -0.7 92,982 - -1.2 92,992 + -2.4 93,007 + -1.1 93,007 + -4.3 93,016 - -0.9 93,041 + -1.9 93,042 - -0.7 93,042 - -3.3 93,042 - -1.9 93,063 + -1.6 93,117 + -2.2 93,159 + -2.9 93,161 + -2.2 93,165 + -0.7 93,166 - -1.5 93,182 + -1.8 93,243 + -2.4 93,246 - -3.2 93,529 - -7.1 93,534 + -3.3 93,553 - -4.1 93,553 - -4.3 93,553 - -6.1 93,650 - -2.8 93,755 + HMPREF1058_RS07955 0.12 -4.0 93,779 + HMPREF1058_RS07955 0.13 -4.8 93,797 - HMPREF1058_RS07955 0.13 -4.0 93,797 - HMPREF1058_RS07955 0.13 -5.9 93,797 - HMPREF1058_RS07955 0.13 -5.5 93,797 - HMPREF1058_RS07955 0.13 -6.1 93,810 + HMPREF1058_RS07955 0.14 -5.0 93,818 - HMPREF1058_RS07955 0.14 -2.6 93,896 - HMPREF1058_RS07955 0.16 -2.8 93,971 + HMPREF1058_RS07955 0.18 -3.6 93,972 - HMPREF1058_RS07955 0.18 -6.0 94,000 - HMPREF1058_RS07955 0.19 -2.6 94,008 + HMPREF1058_RS07955 0.19 -5.7 94,232 + HMPREF1058_RS07955 0.25 -4.6 94,233 - HMPREF1058_RS07955 0.25 -4.5 94,233 - HMPREF1058_RS07955 0.25 -6.9 94,245 + HMPREF1058_RS07955 0.25 -3.0 94,263 + HMPREF1058_RS07955 0.26 -4.0 94,313 - HMPREF1058_RS07955 0.27 -4.1 94,323 - HMPREF1058_RS07955 0.27 -3.8 94,332 - HMPREF1058_RS07955 0.28 -3.7 94,442 - HMPREF1058_RS07955 0.31 -6.3 94,507 + HMPREF1058_RS07955 0.32 -4.5 94,556 - HMPREF1058_RS07955 0.34 -4.7 94,562 + HMPREF1058_RS07955 0.34 -5.4 94,597 - HMPREF1058_RS07955 0.35 -4.5 94,610 + HMPREF1058_RS07955 0.35 -3.2 94,611 - HMPREF1058_RS07955 0.35 -3.8 94,632 - HMPREF1058_RS07955 0.36 -3.2 94,673 + HMPREF1058_RS07955 0.37 -3.0 94,696 + HMPREF1058_RS07955 0.37 -4.6 94,701 + HMPREF1058_RS07955 0.38 -5.3 94,701 + HMPREF1058_RS07955 0.38 -5.2 95,006 + HMPREF1058_RS07955 0.46 -4.9 95,006 + HMPREF1058_RS07955 0.46 -5.8 95,099 + HMPREF1058_RS07955 0.48 -4.6 95,101 + HMPREF1058_RS07955 0.48 -4.2 95,102 - HMPREF1058_RS07955 0.48 -4.8 95,129 + HMPREF1058_RS07955 0.49 -3.2 95,130 - HMPREF1058_RS07955 0.49 -6.3 95,210 + HMPREF1058_RS07955 0.51 -3.6 95,215 + HMPREF1058_RS07955 0.51 -2.6 95,259 - HMPREF1058_RS07955 0.53 -5.5 95,269 + HMPREF1058_RS07955 0.53 -2.3 95,451 + HMPREF1058_RS07955 0.58 -6.3 95,451 + HMPREF1058_RS07955 0.58 -5.4 95,451 + HMPREF1058_RS07955 0.58 -6.6 95,452 - HMPREF1058_RS07955 0.58 -4.6 95,452 - HMPREF1058_RS07955 0.58 -3.3 95,549 - HMPREF1058_RS07955 0.60 -5.6 95,597 - HMPREF1058_RS07955 0.62 -4.8 95,604 - HMPREF1058_RS07955 0.62 -6.7 95,622 - HMPREF1058_RS07955 0.62 -4.2 95,689 + HMPREF1058_RS07955 0.64 -3.9 95,690 - HMPREF1058_RS07955 0.64 -6.5 95,720 - HMPREF1058_RS07955 0.65 -6.5 95,720 - HMPREF1058_RS07955 0.65 -7.1 95,721 + HMPREF1058_RS07955 0.65 -4.2 95,721 + HMPREF1058_RS07955 0.65 -3.2 95,721 + HMPREF1058_RS07955 0.65 -2.8 95,722 - HMPREF1058_RS07955 0.65 -2.8 95,722 - HMPREF1058_RS07955 0.65 -2.6 95,852 + HMPREF1058_RS07955 0.69 -3.0 95,863 + HMPREF1058_RS07955 0.69 -6.3 95,864 - HMPREF1058_RS07955 0.69 -5.3 95,864 - HMPREF1058_RS07955 0.69 -5.9 95,864 - HMPREF1058_RS07955 0.69 -6.8 95,932 + HMPREF1058_RS07955 0.71 -6.0 95,933 - HMPREF1058_RS07955 0.71 -6.9 95,952 + HMPREF1058_RS07955 0.71 -4.7 95,953 - HMPREF1058_RS07955 0.71 -2.8 95,953 - HMPREF1058_RS07955 0.71 -4.4 95,953 - HMPREF1058_RS07955 0.71 -4.8 96,148 + HMPREF1058_RS07955 0.77 -2.8 96,149 - HMPREF1058_RS07955 0.77 -5.4 96,149 - HMPREF1058_RS07955 0.77 -3.7 96,149 - HMPREF1058_RS07955 0.77 -4.3 96,151 - HMPREF1058_RS07955 0.77 -5.2 96,248 + HMPREF1058_RS07955 0.79 -4.3 96,248 + HMPREF1058_RS07955 0.79 -3.0 96,248 + HMPREF1058_RS07955 0.79 -3.6 96,249 - HMPREF1058_RS07955 0.79 -4.2 96,290 - HMPREF1058_RS07955 0.80 -4.5 96,382 - HMPREF1058_RS07955 0.83 -3.4 96,391 + HMPREF1058_RS07955 0.83 -2.8 96,393 + HMPREF1058_RS07955 0.83 -3.2 96,562 + HMPREF1058_RS07955 0.88 -3.9 96,562 + HMPREF1058_RS07955 0.88 -4.1 96,563 - HMPREF1058_RS07955 0.88 -4.8 96,595 - HMPREF1058_RS07955 0.89 -4.7 96,717 + -4.0 96,717 + -1.6 96,717 + -5.6 96,718 - -2.0 96,718 - -5.8 96,718 - -4.5 96,721 + -2.3 96,771 + -3.6 96,771 + -4.2 96,785 + -6.1 96,786 - -2.0 96,797 - -3.6 96,797 - -3.3 96,797 - -3.7 96,900 - -4.6 96,977 + -4.7 96,977 + -4.2 96,978 - -3.4 97,021 + -3.8 97,022 - -3.5 97,067 - +0.6 97,069 + -4.2 97,090 + -2.6 97,090 - +0.1 97,090 - -0.8 97,122 + -2.2 97,126 + -0.8 97,132 + -0.1 97,833 + -0.7 97,833 + +1.7 97,943 + -0.5 97,945 + +2.0 97,945 + +1.0 97,945 + -0.6 97,945 + -0.4 97,945 + -0.9 97,945 + +0.1 97,947 + -0.1 97,947 + +1.0 97,947 + -0.4 97,989 + HMPREF1058_RS07945 0.17 -1.6
Or see this region's nucleotide sequence