Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05085 and HMPREF1058_RS05080 are separated by 7 nucleotides HMPREF1058_RS05080 and HMPREF1058_RS05075 are separated by 12 nucleotides HMPREF1058_RS05075 and HMPREF1058_RS05070 are separated by 150 nucleotides HMPREF1058_RS05070 and HMPREF1058_RS05065 are separated by 22 nucleotides
HMPREF1058_RS05085: HMPREF1058_RS05085 - hypothetical protein, at 250,430 to 251,365
_RS05085
HMPREF1058_RS05080: HMPREF1058_RS05080 - hypothetical protein, at 251,373 to 252,323
_RS05080
HMPREF1058_RS05075: HMPREF1058_RS05075 - hypothetical protein, at 252,336 to 252,821
_RS05075
HMPREF1058_RS05070: HMPREF1058_RS05070 - hypothetical protein, at 252,972 to 253,466
_RS05070
HMPREF1058_RS05065: HMPREF1058_RS05065 - WG repeat-containing protein, at 253,489 to 255,183
_RS05065
Position (kb) 252
253 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 251.346 kb on - strand at 251.346 kb on - strand at 251.456 kb on - strand at 251.850 kb on - strand, within HMPREF1058_RS05080 at 251.855 kb on - strand, within HMPREF1058_RS05080 at 251.855 kb on - strand, within HMPREF1058_RS05080 at 251.878 kb on + strand, within HMPREF1058_RS05080 at 251.879 kb on - strand, within HMPREF1058_RS05080 at 251.879 kb on - strand, within HMPREF1058_RS05080 at 251.883 kb on - strand, within HMPREF1058_RS05080 at 251.907 kb on - strand, within HMPREF1058_RS05080 at 251.910 kb on - strand, within HMPREF1058_RS05080 at 251.945 kb on + strand, within HMPREF1058_RS05080 at 252.174 kb on - strand, within HMPREF1058_RS05080 at 252.283 kb on - strand at 252.300 kb on + strand at 252.305 kb on + strand at 252.306 kb on - strand at 252.310 kb on + strand at 252.471 kb on + strand, within HMPREF1058_RS05075 at 252.471 kb on + strand, within HMPREF1058_RS05075 at 252.472 kb on - strand, within HMPREF1058_RS05075 at 252.472 kb on - strand, within HMPREF1058_RS05075 at 252.476 kb on - strand, within HMPREF1058_RS05075 at 252.517 kb on + strand, within HMPREF1058_RS05075 at 252.642 kb on - strand, within HMPREF1058_RS05075 at 252.921 kb on + strand at 252.964 kb on + strand at 252.964 kb on + strand at 252.964 kb on + strand at 252.964 kb on + strand at 252.964 kb on + strand at 252.965 kb on - strand at 252.965 kb on - strand at 252.965 kb on - strand at 252.968 kb on + strand at 252.968 kb on + strand at 252.987 kb on + strand at 252.996 kb on - strand at 252.996 kb on - strand at 253.127 kb on - strand, within HMPREF1058_RS05070 at 253.127 kb on - strand, within HMPREF1058_RS05070 at 253.187 kb on + strand, within HMPREF1058_RS05070 at 253.248 kb on + strand, within HMPREF1058_RS05070 at 253.332 kb on - strand, within HMPREF1058_RS05070 at 253.345 kb on - strand, within HMPREF1058_RS05070 at 253.345 kb on - strand, within HMPREF1058_RS05070 at 253.427 kb on + strand at 253.427 kb on + strand at 253.436 kb on + strand at 253.484 kb on - strand at 253.485 kb on + strand at 253.486 kb on - strand at 253.488 kb on - strand at 253.551 kb on - strand at 253.603 kb on + strand at 253.604 kb on - strand at 253.604 kb on - strand at 253.610 kb on + strand at 253.632 kb on + strand at 253.647 kb on + strand at 253.648 kb on - strand at 253.654 kb on - strand at 253.654 kb on - strand at 253.678 kb on + strand, within HMPREF1058_RS05065 at 253.678 kb on + strand, within HMPREF1058_RS05065 at 253.747 kb on - strand, within HMPREF1058_RS05065 at 253.765 kb on - strand, within HMPREF1058_RS05065 at 253.796 kb on + strand, within HMPREF1058_RS05065
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day3 remove 251,346 - -0.1 251,346 - -0.8 251,456 - +0.2 251,850 - HMPREF1058_RS05080 0.50 -0.1 251,855 - HMPREF1058_RS05080 0.51 +0.0 251,855 - HMPREF1058_RS05080 0.51 +0.3 251,878 + HMPREF1058_RS05080 0.53 -1.4 251,879 - HMPREF1058_RS05080 0.53 -1.9 251,879 - HMPREF1058_RS05080 0.53 -0.2 251,883 - HMPREF1058_RS05080 0.54 -0.4 251,907 - HMPREF1058_RS05080 0.56 -0.6 251,910 - HMPREF1058_RS05080 0.56 +0.2 251,945 + HMPREF1058_RS05080 0.60 -1.8 252,174 - HMPREF1058_RS05080 0.84 +0.2 252,283 - +0.5 252,300 + -1.2 252,305 + +0.3 252,306 - -2.4 252,310 + -0.9 252,471 + HMPREF1058_RS05075 0.28 +0.9 252,471 + HMPREF1058_RS05075 0.28 +0.4 252,472 - HMPREF1058_RS05075 0.28 -0.3 252,472 - HMPREF1058_RS05075 0.28 +1.6 252,476 - HMPREF1058_RS05075 0.29 -0.4 252,517 + HMPREF1058_RS05075 0.37 +0.1 252,642 - HMPREF1058_RS05075 0.63 +0.2 252,921 + +0.6 252,964 + -0.8 252,964 + -1.2 252,964 + -0.1 252,964 + +0.0 252,964 + -0.3 252,965 - -0.0 252,965 - -1.3 252,965 - -1.1 252,968 + +1.0 252,968 + +0.5 252,987 + -0.7 252,996 - -0.8 252,996 - +0.1 253,127 - HMPREF1058_RS05070 0.31 -1.3 253,127 - HMPREF1058_RS05070 0.31 -0.6 253,187 + HMPREF1058_RS05070 0.43 -0.4 253,248 + HMPREF1058_RS05070 0.56 -0.7 253,332 - HMPREF1058_RS05070 0.73 -0.1 253,345 - HMPREF1058_RS05070 0.75 +0.6 253,345 - HMPREF1058_RS05070 0.75 -0.5 253,427 + -0.1 253,427 + -0.1 253,436 + +0.2 253,484 - -1.3 253,485 + +0.1 253,486 - -0.8 253,488 - -1.0 253,551 - -1.1 253,603 + +0.5 253,604 - -1.0 253,604 - -1.6 253,610 + +0.2 253,632 + +0.2 253,647 + -0.5 253,648 - -1.3 253,654 - -1.6 253,654 - -0.1 253,678 + HMPREF1058_RS05065 0.11 +0.8 253,678 + HMPREF1058_RS05065 0.11 -0.1 253,747 - HMPREF1058_RS05065 0.15 -3.0 253,765 - HMPREF1058_RS05065 0.16 +0.2 253,796 + HMPREF1058_RS05065 0.18 +1.3
Or see this region's nucleotide sequence