Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18430 and HMPREF1058_RS18425 are separated by 83 nucleotides HMPREF1058_RS18425 and HMPREF1058_RS18420 are separated by 7 nucleotides HMPREF1058_RS18420 and HMPREF1058_RS18415 are separated by 42 nucleotides
HMPREF1058_RS18430: HMPREF1058_RS18430 - site-specific integrase, at 158,702 to 159,904
_RS18430
HMPREF1058_RS18425: HMPREF1058_RS18425 - ABC-F family ATP-binding cassette domain-containing protein, at 159,988 to 161,853
_RS18425
HMPREF1058_RS18420: HMPREF1058_RS18420 - DUF3805 domain-containing protein, at 161,861 to 162,694
_RS18420
HMPREF1058_RS18415: HMPREF1058_RS18415 - VOC family protein, at 162,737 to 163,114
_RS18415
Position (kb) 159
160
161
162 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 159.145 kb on + strand, within HMPREF1058_RS18430 at 159.282 kb on - strand, within HMPREF1058_RS18430 at 159.349 kb on - strand, within HMPREF1058_RS18430 at 159.372 kb on + strand, within HMPREF1058_RS18430 at 159.414 kb on + strand, within HMPREF1058_RS18430 at 159.423 kb on + strand, within HMPREF1058_RS18430 at 159.423 kb on + strand, within HMPREF1058_RS18430 at 159.508 kb on + strand, within HMPREF1058_RS18430 at 159.508 kb on + strand, within HMPREF1058_RS18430 at 159.508 kb on + strand, within HMPREF1058_RS18430 at 159.556 kb on + strand, within HMPREF1058_RS18430 at 159.633 kb on + strand, within HMPREF1058_RS18430 at 159.634 kb on - strand, within HMPREF1058_RS18430 at 159.664 kb on + strand, within HMPREF1058_RS18430 at 159.665 kb on - strand, within HMPREF1058_RS18430 at 159.667 kb on + strand, within HMPREF1058_RS18430 at 159.667 kb on + strand, within HMPREF1058_RS18430 at 159.668 kb on - strand, within HMPREF1058_RS18430 at 159.707 kb on + strand, within HMPREF1058_RS18430 at 159.845 kb on + strand at 159.846 kb on - strand at 159.893 kb on - strand at 159.916 kb on - strand at 159.916 kb on - strand at 159.947 kb on - strand at 159.964 kb on + strand at 159.965 kb on - strand at 159.990 kb on - strand at 159.997 kb on + strand at 159.998 kb on - strand at 160.120 kb on + strand at 160.120 kb on + strand at 160.120 kb on + strand at 160.121 kb on - strand at 160.121 kb on - strand at 160.304 kb on + strand, within HMPREF1058_RS18425 at 160.470 kb on + strand, within HMPREF1058_RS18425 at 160.515 kb on + strand, within HMPREF1058_RS18425 at 160.555 kb on - strand, within HMPREF1058_RS18425 at 160.555 kb on - strand, within HMPREF1058_RS18425 at 160.562 kb on + strand, within HMPREF1058_RS18425 at 160.562 kb on + strand, within HMPREF1058_RS18425 at 160.562 kb on + strand, within HMPREF1058_RS18425 at 160.563 kb on - strand, within HMPREF1058_RS18425 at 160.563 kb on - strand, within HMPREF1058_RS18425 at 160.563 kb on - strand, within HMPREF1058_RS18425 at 160.563 kb on - strand, within HMPREF1058_RS18425 at 160.567 kb on - strand, within HMPREF1058_RS18425 at 160.567 kb on - strand, within HMPREF1058_RS18425 at 160.567 kb on - strand, within HMPREF1058_RS18425 at 160.857 kb on - strand, within HMPREF1058_RS18425 at 161.032 kb on - strand, within HMPREF1058_RS18425 at 161.088 kb on + strand, within HMPREF1058_RS18425 at 161.089 kb on - strand, within HMPREF1058_RS18425 at 161.101 kb on + strand, within HMPREF1058_RS18425 at 161.150 kb on + strand, within HMPREF1058_RS18425 at 161.150 kb on + strand, within HMPREF1058_RS18425 at 161.168 kb on + strand, within HMPREF1058_RS18425 at 161.168 kb on + strand, within HMPREF1058_RS18425 at 161.192 kb on - strand, within HMPREF1058_RS18425 at 161.469 kb on - strand, within HMPREF1058_RS18425 at 161.586 kb on - strand, within HMPREF1058_RS18425 at 161.707 kb on + strand at 161.707 kb on + strand at 161.708 kb on - strand at 161.709 kb on + strand at 161.710 kb on - strand at 161.712 kb on + strand at 161.716 kb on + strand at 161.716 kb on + strand at 161.716 kb on + strand at 161.722 kb on - strand at 161.841 kb on + strand at 161.841 kb on + strand at 161.841 kb on + strand at 161.841 kb on + strand at 161.841 kb on + strand at 161.842 kb on - strand at 161.844 kb on - strand at 161.844 kb on - strand at 161.863 kb on - strand at 161.998 kb on + strand, within HMPREF1058_RS18420 at 161.999 kb on - strand, within HMPREF1058_RS18420 at 162.146 kb on + strand, within HMPREF1058_RS18420 at 162.146 kb on + strand, within HMPREF1058_RS18420 at 162.147 kb on - strand, within HMPREF1058_RS18420 at 162.158 kb on - strand, within HMPREF1058_RS18420 at 162.158 kb on - strand, within HMPREF1058_RS18420 at 162.209 kb on - strand, within HMPREF1058_RS18420 at 162.413 kb on - strand, within HMPREF1058_RS18420 at 162.413 kb on - strand, within HMPREF1058_RS18420 at 162.413 kb on - strand, within HMPREF1058_RS18420 at 162.423 kb on + strand, within HMPREF1058_RS18420 at 162.603 kb on + strand, within HMPREF1058_RS18420 at 162.625 kb on + strand at 162.625 kb on + strand at 162.626 kb on - strand at 162.694 kb on + strand at 162.721 kb on - strand at 162.790 kb on - strand, within HMPREF1058_RS18415
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day5 remove 159,145 + HMPREF1058_RS18430 0.37 -0.2 159,282 - HMPREF1058_RS18430 0.48 -0.0 159,349 - HMPREF1058_RS18430 0.54 -0.6 159,372 + HMPREF1058_RS18430 0.56 +0.5 159,414 + HMPREF1058_RS18430 0.59 +0.6 159,423 + HMPREF1058_RS18430 0.60 -1.4 159,423 + HMPREF1058_RS18430 0.60 +1.1 159,508 + HMPREF1058_RS18430 0.67 +0.4 159,508 + HMPREF1058_RS18430 0.67 -0.6 159,508 + HMPREF1058_RS18430 0.67 +0.5 159,556 + HMPREF1058_RS18430 0.71 +0.5 159,633 + HMPREF1058_RS18430 0.77 -0.3 159,634 - HMPREF1058_RS18430 0.77 -0.1 159,664 + HMPREF1058_RS18430 0.80 -0.0 159,665 - HMPREF1058_RS18430 0.80 -1.2 159,667 + HMPREF1058_RS18430 0.80 +1.1 159,667 + HMPREF1058_RS18430 0.80 +0.2 159,668 - HMPREF1058_RS18430 0.80 +2.0 159,707 + HMPREF1058_RS18430 0.84 +1.3 159,845 + -0.5 159,846 - +0.7 159,893 - -0.3 159,916 - -0.0 159,916 - -1.9 159,947 - +0.3 159,964 + -0.8 159,965 - -0.1 159,990 - +0.0 159,997 + +0.3 159,998 - -1.2 160,120 + -2.8 160,120 + -0.3 160,120 + -1.1 160,121 - +0.2 160,121 - +0.5 160,304 + HMPREF1058_RS18425 0.17 -1.2 160,470 + HMPREF1058_RS18425 0.26 -0.8 160,515 + HMPREF1058_RS18425 0.28 -1.1 160,555 - HMPREF1058_RS18425 0.30 -0.6 160,555 - HMPREF1058_RS18425 0.30 -0.9 160,562 + HMPREF1058_RS18425 0.31 +1.6 160,562 + HMPREF1058_RS18425 0.31 +0.4 160,562 + HMPREF1058_RS18425 0.31 -0.1 160,563 - HMPREF1058_RS18425 0.31 +0.1 160,563 - HMPREF1058_RS18425 0.31 -0.7 160,563 - HMPREF1058_RS18425 0.31 +0.3 160,563 - HMPREF1058_RS18425 0.31 -0.3 160,567 - HMPREF1058_RS18425 0.31 -0.3 160,567 - HMPREF1058_RS18425 0.31 +0.0 160,567 - HMPREF1058_RS18425 0.31 +0.1 160,857 - HMPREF1058_RS18425 0.47 -0.0 161,032 - HMPREF1058_RS18425 0.56 -0.0 161,088 + HMPREF1058_RS18425 0.59 +0.3 161,089 - HMPREF1058_RS18425 0.59 +0.2 161,101 + HMPREF1058_RS18425 0.60 -1.3 161,150 + HMPREF1058_RS18425 0.62 +0.3 161,150 + HMPREF1058_RS18425 0.62 +0.7 161,168 + HMPREF1058_RS18425 0.63 -1.6 161,168 + HMPREF1058_RS18425 0.63 -0.2 161,192 - HMPREF1058_RS18425 0.65 +0.1 161,469 - HMPREF1058_RS18425 0.79 +0.3 161,586 - HMPREF1058_RS18425 0.86 -2.5 161,707 + -0.3 161,707 + -0.9 161,708 - +0.6 161,709 + -2.1 161,710 - +0.7 161,712 + -0.2 161,716 + +0.3 161,716 + -1.1 161,716 + -1.0 161,722 - +0.9 161,841 + +0.9 161,841 + +0.4 161,841 + -0.1 161,841 + -0.4 161,841 + -0.3 161,842 - +0.2 161,844 - -1.3 161,844 - +1.1 161,863 - +1.0 161,998 + HMPREF1058_RS18420 0.16 -1.2 161,999 - HMPREF1058_RS18420 0.17 -0.7 162,146 + HMPREF1058_RS18420 0.34 -2.1 162,146 + HMPREF1058_RS18420 0.34 -1.0 162,147 - HMPREF1058_RS18420 0.34 -1.3 162,158 - HMPREF1058_RS18420 0.36 -2.5 162,158 - HMPREF1058_RS18420 0.36 -1.0 162,209 - HMPREF1058_RS18420 0.42 -0.7 162,413 - HMPREF1058_RS18420 0.66 +0.2 162,413 - HMPREF1058_RS18420 0.66 -0.6 162,413 - HMPREF1058_RS18420 0.66 -0.4 162,423 + HMPREF1058_RS18420 0.67 -0.9 162,603 + HMPREF1058_RS18420 0.89 -1.1 162,625 + -0.9 162,625 + +0.3 162,626 - -0.4 162,694 + +1.0 162,721 - -0.0 162,790 - HMPREF1058_RS18415 0.14 +0.9
Or see this region's nucleotide sequence