Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01410 and HMPREF1058_RS01405 are separated by 235 nucleotides HMPREF1058_RS01405 and HMPREF1058_RS01400 overlap by 4 nucleotides HMPREF1058_RS01400 and HMPREF1058_RS01395 overlap by 1 nucleotides
HMPREF1058_RS01410: HMPREF1058_RS01410 - putative transporter, at 134,942 to 136,630
_RS01410
HMPREF1058_RS01405: HMPREF1058_RS01405 - cobyrinate a,c-diamide synthase, at 136,866 to 138,194
_RS01405
HMPREF1058_RS01400: HMPREF1058_RS01400 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 138,191 to 138,766
_RS01400
HMPREF1058_RS01395: HMPREF1058_RS01395 - cobyric acid synthase, at 138,766 to 140,256
_RS01395
Position (kb) 136
137
138
139 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 135.917 kb on + strand, within HMPREF1058_RS01410 at 135.938 kb on + strand, within HMPREF1058_RS01410 at 136.137 kb on - strand, within HMPREF1058_RS01410 at 136.152 kb on - strand, within HMPREF1058_RS01410 at 136.154 kb on - strand, within HMPREF1058_RS01410 at 136.268 kb on + strand, within HMPREF1058_RS01410 at 136.269 kb on - strand, within HMPREF1058_RS01410 at 136.270 kb on + strand, within HMPREF1058_RS01410 at 136.271 kb on - strand, within HMPREF1058_RS01410 at 136.370 kb on + strand, within HMPREF1058_RS01410 at 136.391 kb on + strand, within HMPREF1058_RS01410 at 136.391 kb on + strand, within HMPREF1058_RS01410 at 136.392 kb on - strand, within HMPREF1058_RS01410 at 136.460 kb on + strand, within HMPREF1058_RS01410 at 136.595 kb on - strand at 136.643 kb on - strand at 136.658 kb on - strand at 136.661 kb on - strand at 136.680 kb on + strand at 136.680 kb on + strand at 136.681 kb on - strand at 136.681 kb on - strand at 136.724 kb on + strand at 136.746 kb on + strand at 136.767 kb on + strand at 136.768 kb on - strand at 136.774 kb on + strand at 136.785 kb on + strand at 136.857 kb on + strand at 136.923 kb on - strand at 137.000 kb on + strand, within HMPREF1058_RS01405 at 137.091 kb on - strand, within HMPREF1058_RS01405 at 137.171 kb on + strand, within HMPREF1058_RS01405 at 137.213 kb on + strand, within HMPREF1058_RS01405 at 137.216 kb on - strand, within HMPREF1058_RS01405 at 137.216 kb on - strand, within HMPREF1058_RS01405 at 137.218 kb on + strand, within HMPREF1058_RS01405 at 137.231 kb on + strand, within HMPREF1058_RS01405 at 137.232 kb on - strand, within HMPREF1058_RS01405 at 137.538 kb on - strand, within HMPREF1058_RS01405 at 137.555 kb on + strand, within HMPREF1058_RS01405 at 137.651 kb on + strand, within HMPREF1058_RS01405 at 137.655 kb on + strand, within HMPREF1058_RS01405 at 137.656 kb on - strand, within HMPREF1058_RS01405 at 137.656 kb on - strand, within HMPREF1058_RS01405 at 137.657 kb on + strand, within HMPREF1058_RS01405 at 137.658 kb on - strand, within HMPREF1058_RS01405 at 137.669 kb on - strand, within HMPREF1058_RS01405 at 137.697 kb on - strand, within HMPREF1058_RS01405 at 137.697 kb on - strand, within HMPREF1058_RS01405 at 137.714 kb on - strand, within HMPREF1058_RS01405 at 137.715 kb on + strand, within HMPREF1058_RS01405 at 137.748 kb on + strand, within HMPREF1058_RS01405 at 137.789 kb on - strand, within HMPREF1058_RS01405 at 137.826 kb on + strand, within HMPREF1058_RS01405 at 137.974 kb on + strand, within HMPREF1058_RS01405 at 137.975 kb on - strand, within HMPREF1058_RS01405 at 138.116 kb on + strand at 138.116 kb on + strand at 138.117 kb on - strand at 138.121 kb on - strand at 138.143 kb on + strand at 138.144 kb on - strand at 138.144 kb on - strand at 138.151 kb on + strand at 138.152 kb on - strand at 138.292 kb on + strand, within HMPREF1058_RS01400 at 138.293 kb on - strand, within HMPREF1058_RS01400 at 138.293 kb on - strand, within HMPREF1058_RS01400 at 138.336 kb on + strand, within HMPREF1058_RS01400 at 138.517 kb on + strand, within HMPREF1058_RS01400 at 138.518 kb on - strand, within HMPREF1058_RS01400 at 138.641 kb on - strand, within HMPREF1058_RS01400 at 138.744 kb on - strand at 138.956 kb on + strand, within HMPREF1058_RS01395 at 139.043 kb on + strand, within HMPREF1058_RS01395 at 139.158 kb on + strand, within HMPREF1058_RS01395 at 139.170 kb on - strand, within HMPREF1058_RS01395 at 139.188 kb on + strand, within HMPREF1058_RS01395 at 139.188 kb on + strand, within HMPREF1058_RS01395
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day5 remove 135,917 + HMPREF1058_RS01410 0.58 +0.6 135,938 + HMPREF1058_RS01410 0.59 -1.7 136,137 - HMPREF1058_RS01410 0.71 -0.8 136,152 - HMPREF1058_RS01410 0.72 +0.0 136,154 - HMPREF1058_RS01410 0.72 +0.8 136,268 + HMPREF1058_RS01410 0.79 +0.3 136,269 - HMPREF1058_RS01410 0.79 +0.4 136,270 + HMPREF1058_RS01410 0.79 -0.9 136,271 - HMPREF1058_RS01410 0.79 +0.8 136,370 + HMPREF1058_RS01410 0.85 +0.2 136,391 + HMPREF1058_RS01410 0.86 +2.6 136,391 + HMPREF1058_RS01410 0.86 -0.3 136,392 - HMPREF1058_RS01410 0.86 -0.3 136,460 + HMPREF1058_RS01410 0.90 -1.8 136,595 - +0.8 136,643 - +0.8 136,658 - +2.1 136,661 - +2.2 136,680 + -1.3 136,680 + -0.8 136,681 - +0.8 136,681 - +0.7 136,724 + +0.2 136,746 + -1.3 136,767 + -0.2 136,768 - +1.6 136,774 + -0.5 136,785 + -0.4 136,857 + +1.2 136,923 - -1.2 137,000 + HMPREF1058_RS01405 0.10 -1.0 137,091 - HMPREF1058_RS01405 0.17 -1.3 137,171 + HMPREF1058_RS01405 0.23 -1.8 137,213 + HMPREF1058_RS01405 0.26 -1.8 137,216 - HMPREF1058_RS01405 0.26 -1.8 137,216 - HMPREF1058_RS01405 0.26 -1.8 137,218 + HMPREF1058_RS01405 0.26 -0.3 137,231 + HMPREF1058_RS01405 0.27 -0.8 137,232 - HMPREF1058_RS01405 0.28 -0.6 137,538 - HMPREF1058_RS01405 0.51 -1.0 137,555 + HMPREF1058_RS01405 0.52 -1.8 137,651 + HMPREF1058_RS01405 0.59 +0.8 137,655 + HMPREF1058_RS01405 0.59 +0.5 137,656 - HMPREF1058_RS01405 0.59 -0.8 137,656 - HMPREF1058_RS01405 0.59 -1.3 137,657 + HMPREF1058_RS01405 0.60 -0.0 137,658 - HMPREF1058_RS01405 0.60 -1.4 137,669 - HMPREF1058_RS01405 0.60 +1.2 137,697 - HMPREF1058_RS01405 0.63 -0.5 137,697 - HMPREF1058_RS01405 0.63 -1.2 137,714 - HMPREF1058_RS01405 0.64 -1.2 137,715 + HMPREF1058_RS01405 0.64 -0.9 137,748 + HMPREF1058_RS01405 0.66 -0.2 137,789 - HMPREF1058_RS01405 0.69 +1.6 137,826 + HMPREF1058_RS01405 0.72 -0.0 137,974 + HMPREF1058_RS01405 0.83 +0.4 137,975 - HMPREF1058_RS01405 0.83 -0.5 138,116 + +0.2 138,116 + -2.3 138,117 - -0.2 138,121 - -2.8 138,143 + -2.0 138,144 - -2.0 138,144 - +0.2 138,151 + +0.6 138,152 - -0.1 138,292 + HMPREF1058_RS01400 0.18 +0.1 138,293 - HMPREF1058_RS01400 0.18 +0.1 138,293 - HMPREF1058_RS01400 0.18 -1.9 138,336 + HMPREF1058_RS01400 0.25 -0.9 138,517 + HMPREF1058_RS01400 0.57 +1.2 138,518 - HMPREF1058_RS01400 0.57 -3.1 138,641 - HMPREF1058_RS01400 0.78 -0.7 138,744 - -2.6 138,956 + HMPREF1058_RS01395 0.13 -1.5 139,043 + HMPREF1058_RS01395 0.19 -1.6 139,158 + HMPREF1058_RS01395 0.26 -1.3 139,170 - HMPREF1058_RS01395 0.27 -1.3 139,188 + HMPREF1058_RS01395 0.28 -0.4 139,188 + HMPREF1058_RS01395 0.28 -1.2
Or see this region's nucleotide sequence