Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06605 and HMPREF1058_RS06600 are separated by 68 nucleotides HMPREF1058_RS06600 and HMPREF1058_RS06595 are separated by 7 nucleotides HMPREF1058_RS06595 and HMPREF1058_RS06590 are separated by 10 nucleotides
HMPREF1058_RS06605: HMPREF1058_RS06605 - thiol peroxidase, at 439,092 to 439,595
_RS06605
HMPREF1058_RS06600: HMPREF1058_RS06600 - DedA family protein, at 439,664 to 440,290
_RS06600
HMPREF1058_RS06595: HMPREF1058_RS06595 - hypothetical protein, at 440,298 to 441,815
_RS06595
HMPREF1058_RS06590: HMPREF1058_RS06590 - glutamine--tRNA ligase/YqeY domain fusion protein, at 441,826 to 443,565
_RS06590
Position (kb) 440
441
442 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 439.347 kb on - strand, within HMPREF1058_RS06605 at 439.485 kb on - strand, within HMPREF1058_RS06605 at 439.487 kb on - strand, within HMPREF1058_RS06605 at 439.487 kb on - strand, within HMPREF1058_RS06605 at 439.487 kb on - strand, within HMPREF1058_RS06605 at 439.487 kb on - strand, within HMPREF1058_RS06605 at 439.577 kb on + strand at 439.578 kb on - strand at 439.578 kb on - strand at 439.701 kb on - strand at 439.715 kb on + strand at 439.716 kb on - strand at 439.731 kb on - strand, within HMPREF1058_RS06600 at 439.829 kb on - strand, within HMPREF1058_RS06600 at 439.848 kb on + strand, within HMPREF1058_RS06600 at 440.037 kb on + strand, within HMPREF1058_RS06600 at 440.062 kb on - strand, within HMPREF1058_RS06600 at 440.070 kb on + strand, within HMPREF1058_RS06600 at 440.420 kb on + strand at 440.509 kb on + strand, within HMPREF1058_RS06595 at 440.510 kb on - strand, within HMPREF1058_RS06595 at 440.596 kb on - strand, within HMPREF1058_RS06595 at 440.730 kb on + strand, within HMPREF1058_RS06595 at 440.802 kb on - strand, within HMPREF1058_RS06595 at 440.802 kb on - strand, within HMPREF1058_RS06595 at 440.804 kb on - strand, within HMPREF1058_RS06595 at 440.863 kb on - strand, within HMPREF1058_RS06595 at 440.918 kb on + strand, within HMPREF1058_RS06595 at 440.957 kb on - strand, within HMPREF1058_RS06595 at 441.263 kb on - strand, within HMPREF1058_RS06595 at 441.380 kb on + strand, within HMPREF1058_RS06595 at 441.381 kb on - strand, within HMPREF1058_RS06595 at 441.383 kb on - strand at 441.466 kb on - strand, within HMPREF1058_RS06595 at 441.663 kb on - strand, within HMPREF1058_RS06595 at 441.663 kb on - strand, within HMPREF1058_RS06595 at 441.682 kb on + strand at 441.850 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day5 remove 439,347 - HMPREF1058_RS06605 0.51 -0.8 439,485 - HMPREF1058_RS06605 0.78 -0.1 439,487 - HMPREF1058_RS06605 0.78 +0.7 439,487 - HMPREF1058_RS06605 0.78 -1.6 439,487 - HMPREF1058_RS06605 0.78 -1.4 439,487 - HMPREF1058_RS06605 0.78 -2.2 439,577 + -0.7 439,578 - +1.0 439,578 - +0.0 439,701 - -1.3 439,715 + -1.7 439,716 - -3.3 439,731 - HMPREF1058_RS06600 0.11 -5.9 439,829 - HMPREF1058_RS06600 0.26 -2.9 439,848 + HMPREF1058_RS06600 0.29 -2.0 440,037 + HMPREF1058_RS06600 0.59 -3.8 440,062 - HMPREF1058_RS06600 0.63 -3.2 440,070 + HMPREF1058_RS06600 0.65 -4.4 440,420 + -2.0 440,509 + HMPREF1058_RS06595 0.14 -5.0 440,510 - HMPREF1058_RS06595 0.14 -3.3 440,596 - HMPREF1058_RS06595 0.20 -3.0 440,730 + HMPREF1058_RS06595 0.28 -1.3 440,802 - HMPREF1058_RS06595 0.33 -2.3 440,802 - HMPREF1058_RS06595 0.33 -2.2 440,804 - HMPREF1058_RS06595 0.33 -1.9 440,863 - HMPREF1058_RS06595 0.37 -2.0 440,918 + HMPREF1058_RS06595 0.41 -4.0 440,957 - HMPREF1058_RS06595 0.43 -3.4 441,263 - HMPREF1058_RS06595 0.64 -1.6 441,380 + HMPREF1058_RS06595 0.71 -2.7 441,381 - HMPREF1058_RS06595 0.71 -1.6 441,383 - -2.5 441,466 - HMPREF1058_RS06595 0.77 -1.7 441,663 - HMPREF1058_RS06595 0.90 -1.4 441,663 - HMPREF1058_RS06595 0.90 -4.1 441,682 + -1.3 441,850 - -0.1
Or see this region's nucleotide sequence