Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06295 and HMPREF1058_RS06290 are separated by 220 nucleotides HMPREF1058_RS06290 and HMPREF1058_RS06285 are separated by 58 nucleotides
HMPREF1058_RS06295: HMPREF1058_RS06295 - aspartate ammonia-lyase, at 512,807 to 514,240
_RS06295
HMPREF1058_RS06290: HMPREF1058_RS06290 - lipocalin-like domain-containing protein, at 514,461 to 514,841
_RS06290
HMPREF1058_RS06285: HMPREF1058_RS06285 - hypothetical protein, at 514,900 to 516,387
_RS06285
Position (kb) 514
515 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 513.635 kb on - strand, within HMPREF1058_RS06295 at 513.691 kb on + strand, within HMPREF1058_RS06295 at 513.781 kb on + strand, within HMPREF1058_RS06295 at 513.782 kb on - strand, within HMPREF1058_RS06295 at 513.782 kb on - strand, within HMPREF1058_RS06295 at 513.782 kb on - strand, within HMPREF1058_RS06295 at 513.836 kb on + strand, within HMPREF1058_RS06295 at 513.837 kb on - strand, within HMPREF1058_RS06295 at 513.858 kb on + strand, within HMPREF1058_RS06295 at 513.858 kb on + strand, within HMPREF1058_RS06295 at 513.858 kb on + strand, within HMPREF1058_RS06295 at 513.859 kb on - strand, within HMPREF1058_RS06295 at 513.868 kb on + strand, within HMPREF1058_RS06295 at 513.869 kb on - strand, within HMPREF1058_RS06295 at 513.976 kb on + strand, within HMPREF1058_RS06295 at 513.976 kb on + strand, within HMPREF1058_RS06295 at 513.987 kb on + strand, within HMPREF1058_RS06295 at 513.994 kb on + strand, within HMPREF1058_RS06295 at 513.997 kb on + strand, within HMPREF1058_RS06295 at 514.033 kb on + strand, within HMPREF1058_RS06295 at 514.048 kb on - strand, within HMPREF1058_RS06295 at 514.153 kb on + strand at 514.178 kb on - strand at 514.339 kb on + strand at 514.363 kb on + strand at 514.393 kb on + strand at 514.393 kb on + strand at 514.394 kb on - strand at 514.400 kb on + strand at 514.440 kb on + strand at 514.441 kb on - strand at 514.535 kb on + strand, within HMPREF1058_RS06290 at 514.547 kb on + strand, within HMPREF1058_RS06290 at 514.557 kb on - strand, within HMPREF1058_RS06290 at 514.711 kb on - strand, within HMPREF1058_RS06290 at 514.718 kb on + strand, within HMPREF1058_RS06290 at 514.721 kb on + strand, within HMPREF1058_RS06290 at 514.721 kb on + strand, within HMPREF1058_RS06290 at 514.721 kb on + strand, within HMPREF1058_RS06290 at 514.727 kb on + strand, within HMPREF1058_RS06290 at 514.762 kb on + strand, within HMPREF1058_RS06290 at 514.762 kb on + strand, within HMPREF1058_RS06290 at 514.762 kb on + strand, within HMPREF1058_RS06290 at 514.767 kb on + strand, within HMPREF1058_RS06290 at 514.767 kb on + strand, within HMPREF1058_RS06290 at 514.768 kb on - strand, within HMPREF1058_RS06290 at 514.768 kb on - strand, within HMPREF1058_RS06290 at 514.777 kb on - strand, within HMPREF1058_RS06290 at 514.849 kb on - strand at 514.855 kb on - strand at 514.860 kb on + strand at 514.860 kb on + strand at 514.860 kb on + strand at 514.861 kb on - strand at 514.871 kb on + strand at 514.872 kb on - strand at 514.872 kb on - strand at 515.033 kb on + strand at 515.038 kb on + strand at 515.090 kb on + strand, within HMPREF1058_RS06285 at 515.090 kb on + strand, within HMPREF1058_RS06285 at 515.091 kb on - strand, within HMPREF1058_RS06285 at 515.091 kb on - strand, within HMPREF1058_RS06285 at 515.111 kb on + strand, within HMPREF1058_RS06285 at 515.124 kb on + strand, within HMPREF1058_RS06285 at 515.125 kb on - strand, within HMPREF1058_RS06285 at 515.164 kb on + strand, within HMPREF1058_RS06285 at 515.164 kb on + strand, within HMPREF1058_RS06285 at 515.194 kb on - strand, within HMPREF1058_RS06285 at 515.224 kb on - strand, within HMPREF1058_RS06285 at 515.248 kb on + strand, within HMPREF1058_RS06285 at 515.292 kb on + strand, within HMPREF1058_RS06285 at 515.297 kb on + strand, within HMPREF1058_RS06285 at 515.348 kb on + strand, within HMPREF1058_RS06285 at 515.401 kb on - strand, within HMPREF1058_RS06285 at 515.428 kb on + strand, within HMPREF1058_RS06285 at 515.508 kb on - strand, within HMPREF1058_RS06285 at 515.508 kb on - strand, within HMPREF1058_RS06285 at 515.510 kb on + strand, within HMPREF1058_RS06285 at 515.587 kb on + strand, within HMPREF1058_RS06285 at 515.588 kb on - strand, within HMPREF1058_RS06285 at 515.643 kb on + strand, within HMPREF1058_RS06285 at 515.644 kb on - strand, within HMPREF1058_RS06285 at 515.671 kb on + strand, within HMPREF1058_RS06285 at 515.671 kb on + strand, within HMPREF1058_RS06285 at 515.697 kb on + strand, within HMPREF1058_RS06285 at 515.698 kb on - strand, within HMPREF1058_RS06285 at 515.699 kb on + strand, within HMPREF1058_RS06285 at 515.700 kb on - strand, within HMPREF1058_RS06285 at 515.732 kb on - strand, within HMPREF1058_RS06285 at 515.793 kb on + strand, within HMPREF1058_RS06285 at 515.806 kb on + strand, within HMPREF1058_RS06285 at 515.807 kb on - strand, within HMPREF1058_RS06285 at 515.820 kb on - strand, within HMPREF1058_RS06285 at 515.820 kb on - strand, within HMPREF1058_RS06285
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day5 remove 513,635 - HMPREF1058_RS06295 0.58 +1.0 513,691 + HMPREF1058_RS06295 0.62 -0.8 513,781 + HMPREF1058_RS06295 0.68 -0.6 513,782 - HMPREF1058_RS06295 0.68 -0.2 513,782 - HMPREF1058_RS06295 0.68 +1.0 513,782 - HMPREF1058_RS06295 0.68 +0.6 513,836 + HMPREF1058_RS06295 0.72 -0.5 513,837 - HMPREF1058_RS06295 0.72 -0.9 513,858 + HMPREF1058_RS06295 0.73 -0.0 513,858 + HMPREF1058_RS06295 0.73 -1.3 513,858 + HMPREF1058_RS06295 0.73 +1.6 513,859 - HMPREF1058_RS06295 0.73 -1.5 513,868 + HMPREF1058_RS06295 0.74 +0.2 513,869 - HMPREF1058_RS06295 0.74 -1.5 513,976 + HMPREF1058_RS06295 0.82 -1.3 513,976 + HMPREF1058_RS06295 0.82 +0.5 513,987 + HMPREF1058_RS06295 0.82 +0.4 513,994 + HMPREF1058_RS06295 0.83 -2.2 513,997 + HMPREF1058_RS06295 0.83 -1.5 514,033 + HMPREF1058_RS06295 0.85 +0.6 514,048 - HMPREF1058_RS06295 0.87 -0.9 514,153 + -0.1 514,178 - -1.2 514,339 + +0.2 514,363 + +0.9 514,393 + +0.1 514,393 + +0.8 514,394 - +0.2 514,400 + +0.7 514,440 + -0.5 514,441 - -1.8 514,535 + HMPREF1058_RS06290 0.19 -1.2 514,547 + HMPREF1058_RS06290 0.23 +0.3 514,557 - HMPREF1058_RS06290 0.25 -1.6 514,711 - HMPREF1058_RS06290 0.66 -2.4 514,718 + HMPREF1058_RS06290 0.67 -2.1 514,721 + HMPREF1058_RS06290 0.68 -1.1 514,721 + HMPREF1058_RS06290 0.68 -1.7 514,721 + HMPREF1058_RS06290 0.68 -2.5 514,727 + HMPREF1058_RS06290 0.70 -0.9 514,762 + HMPREF1058_RS06290 0.79 -2.0 514,762 + HMPREF1058_RS06290 0.79 -0.7 514,762 + HMPREF1058_RS06290 0.79 -1.5 514,767 + HMPREF1058_RS06290 0.80 -1.9 514,767 + HMPREF1058_RS06290 0.80 -2.5 514,768 - HMPREF1058_RS06290 0.81 -1.1 514,768 - HMPREF1058_RS06290 0.81 -1.4 514,777 - HMPREF1058_RS06290 0.83 -1.2 514,849 - -1.0 514,855 - -1.7 514,860 + -2.8 514,860 + -1.7 514,860 + -2.0 514,861 - -3.7 514,871 + -1.6 514,872 - -2.0 514,872 - -1.6 515,033 + -0.4 515,038 + -1.0 515,090 + HMPREF1058_RS06285 0.13 -3.1 515,090 + HMPREF1058_RS06285 0.13 -1.1 515,091 - HMPREF1058_RS06285 0.13 -2.4 515,091 - HMPREF1058_RS06285 0.13 +0.3 515,111 + HMPREF1058_RS06285 0.14 -1.3 515,124 + HMPREF1058_RS06285 0.15 -1.2 515,125 - HMPREF1058_RS06285 0.15 -3.0 515,164 + HMPREF1058_RS06285 0.18 -0.5 515,164 + HMPREF1058_RS06285 0.18 -1.3 515,194 - HMPREF1058_RS06285 0.20 -0.7 515,224 - HMPREF1058_RS06285 0.22 -1.1 515,248 + HMPREF1058_RS06285 0.23 -1.2 515,292 + HMPREF1058_RS06285 0.26 -2.4 515,297 + HMPREF1058_RS06285 0.27 +0.3 515,348 + HMPREF1058_RS06285 0.30 -1.5 515,401 - HMPREF1058_RS06285 0.34 -0.9 515,428 + HMPREF1058_RS06285 0.35 -2.1 515,508 - HMPREF1058_RS06285 0.41 -0.9 515,508 - HMPREF1058_RS06285 0.41 -1.2 515,510 + HMPREF1058_RS06285 0.41 -2.3 515,587 + HMPREF1058_RS06285 0.46 -2.2 515,588 - HMPREF1058_RS06285 0.46 -1.6 515,643 + HMPREF1058_RS06285 0.50 -0.9 515,644 - HMPREF1058_RS06285 0.50 -0.8 515,671 + HMPREF1058_RS06285 0.52 -0.2 515,671 + HMPREF1058_RS06285 0.52 -2.3 515,697 + HMPREF1058_RS06285 0.54 -1.7 515,698 - HMPREF1058_RS06285 0.54 -1.4 515,699 + HMPREF1058_RS06285 0.54 -1.1 515,700 - HMPREF1058_RS06285 0.54 -0.7 515,732 - HMPREF1058_RS06285 0.56 -1.6 515,793 + HMPREF1058_RS06285 0.60 -1.4 515,806 + HMPREF1058_RS06285 0.61 -1.1 515,807 - HMPREF1058_RS06285 0.61 -1.1 515,820 - HMPREF1058_RS06285 0.62 -1.0 515,820 - HMPREF1058_RS06285 0.62 -1.2
Or see this region's nucleotide sequence